Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 5.8e-244 847.0 404 100.0
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 2.7e-225 785.0 403 93.5
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 8.7e-224 780.0 402 92.3
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 8.7e-224 780.0 404 92.1
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 1.5e-223 779.2 415 91.1
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 2.5e-223 778.5 404 91.6
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 2.1e-222 775.4 404 90.3
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 5.3e-221 770.8 402 90.0
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 6.9e-221 770.4 403 90.6
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 6.9e-221 770.4 405 90.1
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 6.9e-221 770.4 403 91.3
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 1.2e-220 769.6 405 91.6
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 1.2e-220 769.6 404 90.6
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 2.0e-220 768.8 404 91.6
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 2.0e-220 768.8 404 90.8
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 5.8e-220 767.3 409 89.2
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 1.0e-219 766.5 403 91.1
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 1.0e-219 766.5 403 89.3
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 1.3e-219 766.1 405 89.6
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 1.7e-219 765.8 418 86.8
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 2.9e-219 765.0 403 89.8
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 4.9e-219 764.2 405 89.1
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 4.9e-219 764.2 402 89.8
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 8.4e-219 763.5 402 91.5
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 1.1e-218 763.1 405 88.6
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 1.1e-218 763.1 391 93.4
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 1.9e-218 762.3 401 91.3
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 1.9e-218 762.3 405 89.1
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 2.5e-218 761.9 404 90.3
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 3.2e-218 761.5 404 88.9
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 4.2e-218 761.1 404 90.1
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 4.2e-218 761.1 404 90.1
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 7.1e-218 760.4 404 90.8
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 2.7e-217 758.4 404 90.3
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 4.6e-217 757.7 406 88.4
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 4.6e-217 757.7 405 88.6
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 6.0e-217 757.3 403 89.1
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 1.8e-216 755.7 403 88.6
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 1.8e-216 755.7 403 88.6
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 2.3e-216 755.4 391 91.6
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 5.1e-216 754.2 405 88.6
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 4.3e-215 751.1 403 88.1
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 9.6e-215 750.0 403 89.1
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 9.6e-215 750.0 404 88.9
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 9.6e-215 750.0 404 89.1
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 9.6e-215 750.0 403 88.1
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 3.7e-214 748.0 402 87.3
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 8.2e-214 746.9 414 86.5
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 1.4e-213 746.1 396 89.4
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 1.8e-213 745.7 390 89.7
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 1.8e-213 745.7 410 87.3
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 2.4e-213 745.3 397 88.2
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 2.4e-213 745.3 402 88.8
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 4.1e-213 744.6 389 89.2
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 9.0e-213 743.4 402 87.1
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 9.0e-213 743.4 405 87.9
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 1.2e-212 743.0 403 87.3
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 2.0e-212 742.3 402 88.8
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 2.6e-212 741.9 402 88.3
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 4.5e-212 741.1 434 82.9
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 4.5e-212 741.1 397 87.9
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 4.5e-212 741.1 403 88.3
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 5.9e-212 740.7 410 86.3
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 1.0e-211 740.0 402 86.6
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 1.3e-211 739.6 403 88.1
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 1.3e-211 739.6 415 85.8
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 8.5e-211 736.9 404 86.4
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 1.1e-210 736.5 403 87.1
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 7.9e-209 730.3 391 89.8
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.8e-208 729.2 404 86.9
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 5.1e-208 727.6 404 84.2
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 1.9e-207 725.7 404 83.7
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 1.9e-207 725.7 404 83.4
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 3.3e-207 724.9 433 81.3
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 7.4e-207 723.8 404 84.4
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 9.7e-207 723.4 402 87.6
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 4.8e-206 721.1 404 83.4
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 6.9e-205 717.2 391 85.9
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.7e-203 712.6 398 85.9
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 1.1e-202 709.9 404 82.7
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 1.4e-202 709.5 399 84.2
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 2.5e-202 708.8 403 83.1
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 5.5e-202 707.6 421 82.9
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 2.3e-200 702.2 406 83.7
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 2.3e-200 702.2 400 83.5
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 9.7e-199 696.8 403 83.6
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.7e-198 696.0 388 85.6
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 3.7e-198 694.9 403 82.6
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 6.3e-198 694.1 387 83.5
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 6.3e-198 694.1 387 83.5
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 3.1e-197 691.8 404 79.7
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 1.5e-196 689.5 357 90.2
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 2.6e-196 688.7 367 89.1
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 1.0e-195 686.8 389 83.0
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.9e-194 682.6 381 85.8
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 6.1e-193 677.6 386 83.7
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 4.4e-191 671.4 410 78.5
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 5.9e-188 661.0 411 80.3
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 1.7e-187 659.4 388 79.6
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 2.2e-187 659.1 388 79.6
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 3.8e-187 658.3 341 90.0
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 4.2e-186 654.8 388 78.9
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 4.2e-186 654.8 404 80.9
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 1.4e-184 649.8 399 78.9
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 5.2e-184 647.9 376 80.3
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 3.7e-182 641.7 403 79.2
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 4.4e-175 618.2 325 88.0
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 2.4e-173 612.5 357 80.4
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 1.0e-171 607.1 305 94.1
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 2.8e-169 599.0 396 71.2
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 3.6e-169 598.6 306 92.8
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 2.6e-167 592.4 400 71.0
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 9.8e-167 590.5 306 91.8
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 4.9e-166 588.2 396 73.2
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 5.4e-165 584.7 394 70.1
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 3.8e-163 578.6 395 68.9
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 3.6e-153 545.4 348 76.1
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.1e-149 533.9 404 64.1
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 8.6e-147 524.2 393 63.1
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 6.0e-124 448.4 242 87.6
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 7.4e-106 388.3 208 87.5
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 8.2e-105 384.8 266 67.3
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 2.7e-92 343.2 192 83.3
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 1.8e-91 340.5 372 54.0
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 3.7e-89 332.8 218 78.9
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.4e-88 330.9 171 90.6
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 3.9e-83 312.8 160 89.4
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 3.8e-78 296.2 224 62.9
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 2.7e-76 290.0 434 38.7
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 2.2e-73 280.4 146 90.4
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 4.7e-60 236.1 172 65.7
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 1.4e-59 234.6 145 77.9
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 8.0e-44 182.2 190 53.2
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.5e-34 151.4 72 95.8
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 6.6e-22 109.4 202 40.6
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 7.1e-16 89.4 269 29.4
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 1.0e-06 58.9 43 67.4


User provided reference genes

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