Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.8e-124 449.5 264 100.0
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.1e-97 360.5 274 82.5
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 3.4e-51 206.1 164 69.5
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 9.9e-51 204.5 226 56.2
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 2.1e-48 196.8 159 64.8
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 3.3e-46 189.5 183 61.2
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 1.2e-43 181.0 158 60.8
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 7.6e-43 178.3 217 52.1
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 1.1e-41 174.5 221 51.1
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 2.4e-41 173.3 172 55.8
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 1.6e-40 170.6 191 51.8
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 4.6e-40 169.1 202 47.0
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 8.7e-39 164.9 168 54.2
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 5.6e-38 162.2 143 60.1
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 5.6e-38 162.2 206 49.5
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 9.6e-38 161.4 188 50.0
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 1.3e-37 161.0 209 48.8
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 1.6e-37 160.6 167 53.9
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 1.6e-37 160.6 156 56.4
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 2.1e-37 160.2 215 47.9
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 2.1e-37 160.2 163 49.7
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 8.1e-37 158.3 166 53.0
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.8e-36 157.1 198 45.5
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 2.4e-36 156.8 163 55.2
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 5.3e-36 155.6 157 52.2
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 6.9e-36 155.2 164 51.8
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 2.6e-35 153.3 162 53.7
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 3.4e-35 152.9 163 49.7
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 4.5e-35 152.5 194 44.8
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 1.3e-34 151.0 171 50.3
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 2.2e-34 150.2 164 50.6
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 2.9e-34 149.8 186 45.7
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 4.9e-34 149.1 211 46.9
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 4.9e-34 149.1 179 46.9
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 4.9e-34 149.1 162 46.9
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 4.9e-34 149.1 173 49.1
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 6.4e-34 148.7 169 51.5
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 8.4e-34 148.3 187 47.1
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 1.4e-33 147.5 177 46.9
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 1.9e-33 147.1 161 54.0
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 1.9e-33 147.1 155 52.9
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-33 147.1 162 50.0
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 1.9e-33 147.1 162 46.3
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 1.9e-33 147.1 192 45.8
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 1.9e-33 147.1 199 46.2
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 3.2e-33 146.4 153 46.4
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 3.2e-33 146.4 177 45.2
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 4.2e-33 146.0 176 50.0
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 4.2e-33 146.0 174 50.0
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 5.4e-33 145.6 159 50.3
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.4e-33 145.6 162 49.4
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 5.4e-33 145.6 204 45.6
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 5.4e-33 145.6 156 50.6
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 5.4e-33 145.6 157 49.7
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 5.4e-33 145.6 181 48.6
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 5.4e-33 145.6 164 50.6
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 1.6e-32 144.1 181 48.1
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 2.1e-32 143.7 165 49.1
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 2.1e-32 143.7 175 48.6
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 2.7e-32 143.3 181 46.4
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 3.5e-32 142.9 156 47.4
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.5e-32 142.9 194 44.3
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 4.6e-32 142.5 170 52.4
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 6.0e-32 142.1 170 52.4
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 7.9e-32 141.7 162 48.8
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 7.9e-32 141.7 183 44.8
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 7.9e-32 141.7 170 52.4
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-31 141.4 162 48.8
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 1.5e-30 137.5 171 46.8
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 3.3e-30 136.3 167 44.9
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 4.3e-30 136.0 138 49.3
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 5.6e-30 135.6 178 44.4
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 3.6e-29 132.9 150 49.3
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 6.2e-29 132.1 165 42.4
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 1.1e-28 131.3 165 42.4
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 1.8e-28 130.6 162 42.6
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 4.0e-28 129.4 160 46.2
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 9.0e-28 128.3 155 46.5
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 1.2e-27 127.9 157 43.9
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 3.4e-27 126.3 235 38.7
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 4.5e-27 125.9 173 40.5
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 7.6e-27 125.2 167 43.7
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 9.9e-27 124.8 171 43.9
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 2.2e-26 123.6 170 44.1
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 6.4e-26 122.1 155 42.6
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.1e-25 121.3 201 37.3
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 1.1e-25 121.3 201 37.3
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 1.1e-25 121.3 164 40.2
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 1.4e-25 120.9 188 42.6
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 2.4e-25 120.2 201 38.8
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 3.2e-25 119.8 182 40.7
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 4.2e-25 119.4 158 43.7
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 4.2e-25 119.4 171 43.9
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 5.5e-25 119.0 183 42.6
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 7.1e-25 118.6 168 42.3
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 9.3e-25 118.2 202 35.6
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 2.1e-24 117.1 163 41.7
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 2.7e-24 116.7 171 39.2
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 3.5e-24 116.3 181 41.4
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 4.6e-24 115.9 144 43.1
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 6.0e-24 115.5 213 37.1
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 1.8e-23 114.0 176 40.3
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.8e-23 114.0 196 39.8
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 2.3e-23 113.6 147 44.9
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 3.0e-23 113.2 213 35.7
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 3.9e-23 112.8 166 41.0
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 1.1e-22 111.3 164 40.2
CSS0041755 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 1.9e-22 110.5 145 65.5
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-22 110.5 205 38.0
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 4.3e-22 109.4 141 43.3
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 4.3e-22 109.4 205 37.6
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 2.8e-21 106.7 183 38.8
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 8.1e-21 105.1 155 40.0
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.4e-20 104.4 174 38.5
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 1.4e-20 104.4 150 40.7
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-19 100.9 117 49.6
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.5e-19 99.4 112 50.0
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 6.5e-18 95.5 188 31.4
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.9e-17 94.0 93 53.8
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 9.3e-17 91.7 91 52.7
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 9.3e-17 91.7 146 38.4
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 9.3e-17 91.7 146 38.4
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.0e-16 89.0 146 39.0
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.0e-15 88.2 159 36.5
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 1.3e-15 87.8 109 45.9
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 1.9e-14 84.0 196 34.2
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 3.3e-14 83.2 99 44.4
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 4.3e-14 82.8 118 43.2
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 8.2e-13 78.6 186 34.4
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 9.0e-12 75.1 54 63.0
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 1.5e-11 74.3 151 35.1
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 5.9e-11 72.4 118 39.8
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 7.6e-11 72.0 81 49.4
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-10 71.6 205 31.2
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-10 71.6 205 31.2
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 5.5e-09 65.9 109 36.7
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 3.6e-08 63.2 82 40.2
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 7.9e-08 62.0 104 33.7
Os04g0556900 Oryza sativa ssp. japonica HOM05D005367 ORTHO05D006328 1.3e-07 61.2 171 29.2
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 2.3e-07 60.5 112 33.9
CDE08G1175 Ceratophyllum demersum HOM05D005367 ORTHO05D006328 3.3e-06 56.6 30 76.7
Mapoly0101s0052 Marchantia polymorpha HOM05D019105 ORTHO05D018335 7.4e-06 55.5 83 37.3
SEGI_25569 Sequoiadendron giganteum HOM05D019105 ORTHO05D006328 7.4e-06 55.5 92 33.7


User provided reference genes

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