Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 1.8e-134 482.6 249 100.0
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 5.4e-99 364.8 247 79.4
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 1.0e-97 360.5 247 78.1
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.3e-96 355.5 248 76.2
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 4.0e-94 348.6 236 79.7
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 1.6e-82 310.1 204 80.4
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 2.3e-81 306.2 208 77.9
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 3.9e-81 305.4 249 67.5
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 6.6e-81 304.7 249 68.7
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.1e-80 303.9 224 72.8
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 1.5e-80 303.5 246 68.7
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 2.1e-79 299.7 204 76.0
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 1.8e-78 296.6 239 69.5
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 8.9e-78 294.3 249 65.5
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 1.5e-77 293.5 235 68.9
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 5.8e-77 291.6 250 65.6
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 5.8e-77 291.6 249 64.7
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 2.2e-76 289.7 239 68.6
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 3.8e-76 288.9 238 66.0
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 4.9e-76 288.5 248 63.3
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 6.4e-76 288.1 236 66.9
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 1.4e-75 287.0 250 63.2
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 2.4e-75 286.2 248 66.1
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 3.2e-75 285.8 243 66.7
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 4.1e-75 285.4 245 64.1
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.1e-75 284.6 264 62.9
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 1.2e-74 283.9 252 64.7
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.6e-74 283.5 227 67.0
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.6e-74 283.5 231 66.7
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 2.1e-74 283.1 224 68.8
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 2.7e-74 282.7 239 63.6
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 4.6e-74 282.0 196 73.0
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 4.6e-74 282.0 205 73.7
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 6.0e-74 281.6 221 70.1
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 7.8e-74 281.2 248 65.3
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 7.8e-74 281.2 249 61.0
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 1.0e-73 280.8 224 69.2
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 1.0e-73 280.8 205 73.2
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 2.3e-73 279.6 227 68.3
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 5.1e-73 278.5 227 66.1
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 5.1e-73 278.5 241 63.9
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 5.1e-73 278.5 241 63.9
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 5.1e-73 278.5 253 64.8
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 8.7e-73 277.7 232 68.5
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.1e-72 277.3 240 64.2
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 1.1e-72 277.3 239 63.2
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 1.5e-72 276.9 227 66.5
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.5e-72 276.9 210 69.5
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.9e-72 276.6 248 64.5
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.5e-72 276.2 224 67.4
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.3e-72 275.8 209 71.3
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 4.3e-72 275.4 230 65.7
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 4.3e-72 275.4 248 64.1
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.3e-72 275.4 248 64.1
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 4.3e-72 275.4 244 62.3
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 7.3e-72 274.6 248 60.9
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 9.6e-72 274.2 245 64.1
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.6e-71 273.5 209 70.3
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.6e-71 273.5 202 71.8
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.1e-71 273.1 235 63.4
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 3.6e-71 272.3 205 70.7
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 1.4e-70 270.4 248 62.1
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 4.0e-70 268.9 203 70.4
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 5.2e-70 268.5 260 64.2
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 6.9e-70 268.1 199 72.4
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 6.9e-70 268.1 199 72.4
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 9.0e-70 267.7 216 65.7
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 1.2e-69 267.3 253 60.9
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 2.0e-69 266.5 248 61.7
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 2.0e-69 266.5 242 60.3
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 2.0e-69 266.5 213 69.5
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 2.0e-69 266.5 244 61.5
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 3.4e-69 265.8 244 62.7
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 3.4e-69 265.8 253 59.7
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 5.8e-69 265.0 244 61.5
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 7.6e-69 264.6 194 72.2
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.3e-68 263.8 239 61.9
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 4.9e-68 261.9 249 61.0
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 4.9e-68 261.9 241 61.8
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 4.9e-68 261.9 236 63.6
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 4.9e-68 261.9 247 61.5
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 6.4e-68 261.5 249 61.0
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.4e-67 260.4 238 61.8
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 4.2e-67 258.8 189 73.0
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 9.3e-67 257.7 189 71.4
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 6.0e-66 255.0 261 62.1
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 7.8e-66 254.6 167 80.2
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 1.7e-65 253.4 209 63.6
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 3.0e-65 252.7 206 67.0
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 3.0e-65 252.7 218 61.9
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 3.9e-65 252.3 218 61.9
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 6.6e-65 251.5 248 63.3
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 1.1e-64 250.8 230 62.6
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 2.5e-64 249.6 240 60.0
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.3e-63 247.3 199 67.8
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.6e-63 246.9 266 58.3
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.6e-63 245.7 248 60.5
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 6.2e-63 245.0 201 67.2
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.8e-62 243.4 240 59.2
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 2.4e-62 243.0 201 66.7
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 3.1e-62 242.7 248 60.1
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 4.0e-62 242.3 201 67.2
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 2.0e-61 240.0 253 56.9
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 2.0e-61 240.0 239 57.7
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 4.5e-61 238.8 237 57.8
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 1.7e-60 236.9 218 63.8
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 5.4e-59 231.9 216 58.3
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 7.1e-59 231.5 203 64.5
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 1.2e-58 230.7 250 56.4
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 4.6e-58 228.8 221 57.9
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 1.3e-57 227.3 209 60.8
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 3.0e-57 226.1 193 61.7
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 6.7e-57 224.9 209 59.8
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.1e-56 224.2 186 61.8
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.9e-56 223.4 185 62.2
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 3.3e-56 222.6 218 59.2
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 4.3e-56 222.2 227 55.9
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.7e-55 219.2 214 59.3
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 6.2e-55 218.4 169 68.6
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 8.1e-55 218.0 218 56.9
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 3.1e-54 216.1 162 70.4
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 5.3e-54 215.3 162 69.1
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 5.3e-54 215.3 162 69.1
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 6.9e-54 214.9 214 59.8
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 9.0e-54 214.5 198 59.1
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 1.2e-53 214.2 218 56.0
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.5e-53 213.8 232 55.2
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 5.8e-53 211.8 218 57.8
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 5.8e-53 211.8 214 57.5
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 2.4e-51 206.5 215 55.8
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 3.0e-49 199.5 148 70.9
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 6.2e-47 191.8 166 64.5
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 2.4e-46 189.9 195 56.4
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 1.4e-43 180.6 130 74.6
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 1.3e-41 174.1 187 52.4
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.0e-41 172.9 186 53.8
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 5.1e-41 172.2 183 55.7
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 1.9e-40 170.2 196 50.5
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 3.3e-40 169.5 230 47.0
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 3.7e-39 166.0 164 53.7
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 1.5e-37 160.6 188 51.6
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 1.7e-36 157.1 97 87.6
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.8e-36 156.0 199 47.7
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 8.5e-36 154.8 115 73.0
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 2.7e-34 149.8 96 85.4
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.9e-32 143.7 190 48.4
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 1.3e-31 141.0 121 62.8
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.3e-31 141.0 201 45.3
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.1e-26 123.6 198 40.9
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 1.4e-25 120.9 94 67.0
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.3e-25 120.2 93 60.2
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 4.4e-16 89.4 107 55.1
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 1.3e-15 87.8 86 51.2
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 5.9e-13 79.0 65 61.5
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 1.7e-12 77.4 68 57.4
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.9e-11 73.9 153 40.5
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 5.7e-08 62.4 85 44.7
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 1.7e-07 60.8 63 57.1
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.8e-06 57.4 84 44.0


User provided reference genes

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