Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.2e-250 869.4 454 100.0
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.6e-115 419.9 399 63.4
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.4e-115 419.1 399 63.4
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 1.1e-110 404.4 399 60.9
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 4.0e-108 396.0 399 58.4
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 5.2e-108 395.6 399 59.4
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 1.5e-107 394.0 399 58.4
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 2.0e-107 393.7 399 58.4
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 2.0e-107 393.7 399 59.6
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 2.0e-107 393.7 399 58.1
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 4.4e-107 392.5 399 59.4
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 4.4e-107 392.5 399 59.4
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 5.7e-107 392.1 399 60.2
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.8e-107 391.3 399 60.7
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 1.3e-106 391.0 399 58.1
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 1.3e-106 391.0 399 59.6
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.7e-106 390.6 399 59.1
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 2.2e-106 390.2 399 58.9
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 2.8e-106 389.8 399 58.6
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.8e-106 389.8 399 58.6
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 6.3e-106 388.7 399 57.1
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 6.3e-106 388.7 399 58.9
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 6.3e-106 388.7 399 58.9
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 1.4e-105 387.5 399 57.9
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 1.8e-105 387.1 399 57.9
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 1.8e-105 387.1 399 57.4
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.1e-105 386.0 399 58.1
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 4.1e-105 386.0 399 57.1
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 5.4e-105 385.6 399 56.9
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 5.4e-105 385.6 399 58.4
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 5.4e-105 385.6 399 57.1
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 7.0e-105 385.2 399 58.9
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 7.0e-105 385.2 399 56.6
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 7.0e-105 385.2 399 56.9
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 9.2e-105 384.8 399 57.4
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 1.2e-104 384.4 399 57.1
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 1.6e-104 384.0 399 56.9
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.6e-104 384.0 399 58.1
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 2.0e-104 383.6 399 58.1
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 2.0e-104 383.6 399 58.6
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 3.5e-104 382.9 399 57.1
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 3.5e-104 382.9 399 57.9
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.5e-104 382.5 399 60.2
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 4.5e-104 382.5 399 57.1
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 4.5e-104 382.5 399 57.4
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.0e-103 381.3 399 59.1
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 1.3e-103 380.9 398 58.0
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 1.7e-103 380.6 399 57.9
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 2.3e-103 380.2 399 57.9
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 2.3e-103 380.2 399 58.1
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 2.9e-103 379.8 399 57.4
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 2.9e-103 379.8 399 56.4
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 3.8e-103 379.4 399 56.6
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 5.0e-103 379.0 399 56.1
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 6.6e-103 378.6 399 57.1
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 6.6e-103 378.6 399 56.1
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.9e-102 377.1 399 58.1
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.9e-102 377.1 399 57.6
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 3.3e-102 376.3 399 56.9
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 5.6e-102 375.6 399 57.9
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 5.6e-102 375.6 399 56.1
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.6e-101 374.0 399 55.4
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 1.6e-101 374.0 399 57.1
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 2.1e-101 373.6 399 57.4
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 3.6e-101 372.9 399 55.1
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 6.1e-101 372.1 399 56.6
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 1.8e-100 370.5 401 56.1
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 1.8e-100 370.5 399 56.6
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 2.3e-100 370.2 399 55.9
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 2.3e-100 370.2 399 55.9
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 4.0e-100 369.4 399 56.4
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 4.0e-100 369.4 399 54.6
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 8.9e-100 368.2 399 54.9
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 1.2e-99 367.9 399 54.9
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 1.2e-99 367.9 399 55.1
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 1.5e-99 367.5 399 56.4
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 1.5e-99 367.5 399 56.1
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 3.7e-98 362.8 384 55.5
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.1e-97 359.4 362 61.0
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 7.0e-97 358.6 399 54.1
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 6.0e-96 355.5 399 52.9
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 1.0e-95 354.8 399 54.6
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 1.7e-95 354.0 399 53.9
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 5.0e-95 352.4 373 55.8
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 1.5e-94 350.9 399 53.1
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 1.5e-94 350.9 399 53.1
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 3.3e-94 349.7 399 52.6
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 3.3e-94 349.7 399 53.1
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 5.6e-94 349.0 399 52.9
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 5.6e-94 349.0 399 52.9
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 5.6e-94 349.0 399 52.9
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 9.5e-94 348.2 399 52.1
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 9.5e-94 348.2 399 52.6
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 1.2e-93 347.8 399 52.1
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 2.8e-93 346.7 399 52.6
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 3.6e-93 346.3 399 51.6
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 1.1e-92 344.7 399 51.6
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 4.0e-92 342.8 399 51.4
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 8.9e-92 341.7 399 51.6
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 8.9e-92 341.7 399 51.6
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 8.9e-92 341.7 399 51.6
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 1.2e-91 341.3 399 51.6
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 4.4e-91 339.3 434 51.4
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 5.8e-91 339.0 399 54.4
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 1.7e-90 337.4 399 53.1
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 6.4e-90 335.5 399 51.9
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.9e-89 334.0 400 51.0
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 7.0e-89 332.0 397 52.9
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 6.0e-88 328.9 399 50.9
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.3e-87 327.8 368 57.6
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 9.5e-86 321.6 399 51.4
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 1.2e-85 321.2 344 58.7
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 4.0e-84 316.2 399 51.4
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.2e-83 314.7 399 50.6
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 7.3e-78 295.4 225 76.0
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.2e-75 288.1 224 75.4
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.4e-75 286.2 224 75.0
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.3e-74 284.6 375 50.1
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.9e-73 280.8 314 57.0
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.1e-68 265.0 226 71.2
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 2.4e-60 237.3 401 39.4
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.9e-54 217.6 405 37.0
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.3e-52 209.5 161 75.2
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 7.9e-48 195.7 250 46.8
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 7.4e-46 189.1 389 37.5
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 4.8e-45 186.4 390 33.1
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.2e-43 181.8 400 32.5
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.1e-41 175.3 390 32.8
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.9e-31 140.2 227 43.2
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.5e-30 137.5 77 80.5
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.3e-28 129.8 309 34.3
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.6e-27 127.5 225 39.1
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 3.4e-27 127.1 77 75.3
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.7e-26 124.8 217 39.2
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.9e-26 124.0 225 38.2
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 3.1e-20 104.0 94 58.5
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.5e-19 100.5 86 72.1
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 2.2e-10 71.2 37 83.8
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.8e-10 70.5 62 72.6
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 3.2e-09 67.4 48 68.8


User provided reference genes

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