Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040042 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.0e-65 252.3 131 100.0
Rhsim01G0270200 Rhododendron simsii HOM05D003908 ORTHO05D004488 3.3e-63 245.0 131 95.4
unitig_22.g5278 Utricularia gibba HOM05D003908 ORTHO05D004488 1.2e-62 243.0 131 94.7
MBI07_g21062_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 4.7e-62 241.1 131 91.6
Rhsim01G0201300 Rhododendron simsii HOM05D003908 ORTHO05D004488 4.7e-62 241.1 131 93.9
Aqoxy5G00367 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 1.1e-61 240.0 131 93.9
CSS0036720 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.1e-61 240.0 131 93.1
CSS0040700 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.1e-61 240.0 131 93.1
Actinidia19977 Actinidia chinensis HOM05D003908 ORTHO05D004488 1.4e-61 239.6 131 93.1
Actinidia27523 Actinidia chinensis HOM05D003908 ORTHO05D004488 1.4e-61 239.6 131 93.1
Nitab4.5_0000360g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.8e-61 239.2 131 93.1
Nitab4.5_0000443g0180 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.8e-61 239.2 131 93.1
Nitab4.5_0002776g0060 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.8e-61 239.2 131 93.1
Aqoxy6G02470 Aquilegia oxysepala HOM05D003908 ORTHO05D004488 3.1e-61 238.4 131 92.4
CSS0027656 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 3.1e-61 238.4 131 92.4
Dinv34562 Davidia involucrata HOM05D003908 ORTHO05D004488 3.1e-61 238.4 131 91.6
Hma1.2p1_0172F.1_g076150 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 5.2e-61 237.7 131 91.6
Hma1.2p1_0760F.1_g214230 Hydrangea macrophylla HOM05D003908 ORTHO05D004488 5.2e-61 237.7 131 90.1
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 5.2e-61 237.7 131 91.6
arahy.Tifrunner.gnm1.ann1.95Q6AF Arachis hypogaea HOM05D003908 ORTHO05D004488 6.8e-61 237.3 131 91.6
arahy.Tifrunner.gnm1.ann1.Y10HXA Arachis hypogaea HOM05D003908 ORTHO05D004488 1.2e-60 236.5 131 90.8
MBI10_g16831_MAGBIO Magnolia biondii HOM05D003908 ORTHO05D004488 1.2e-60 236.5 131 90.8
arahy.Tifrunner.gnm1.ann1.LT9XWZ Arachis hypogaea HOM05D003908 ORTHO05D004488 1.5e-60 236.1 131 90.1
PGSC0003DMG400009421 Solanum tuberosum HOM05D003908 ORTHO05D004488 1.5e-60 236.1 131 91.6
Peaxi162Scf00199g00925 Petunia axillaris HOM05D003908 ORTHO05D004488 2.0e-60 235.7 131 91.6
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 2.0e-60 235.7 131 90.8
CAN.G1299.5 Capsicum annuum HOM05D003908 ORTHO05D004488 4.4e-60 234.6 131 90.1
Gohir.D08G206400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 4.4e-60 234.6 131 89.3
Gorai.004G218600 Gossypium raimondii HOM05D003908 ORTHO05D004488 4.4e-60 234.6 131 89.3
Solyc02g068450.3 Solanum lycopersicum HOM05D003908 ORTHO05D004488 4.4e-60 234.6 131 90.8
Sopen02g017590 Solanum pennellii HOM05D003908 ORTHO05D004488 4.4e-60 234.6 131 90.8
Thecc.01G268300 Theobroma cacao HOM05D003908 ORTHO05D004488 4.4e-60 234.6 131 90.1
Duzib138G1305 Durio zibethinus HOM05D003908 ORTHO05D004488 5.8e-60 234.2 131 89.3
Oeu018177.1 Olea europaea HOM05D003908 ORTHO05D004488 5.8e-60 234.2 131 90.8
MSTRG.21514 Avicennia marina HOM05D003908 ORTHO05D004488 7.5e-60 233.8 131 90.1
Migut.D00367 Erythranthe guttata HOM05D003908 ORTHO05D004488 7.5e-60 233.8 131 90.8
Lj1g0011223 Lotus japonicus HOM05D003908 ORTHO05D004488 7.5e-60 233.8 131 90.8
Sabra05G0166800 Salix brachista HOM05D003908 ORTHO05D004488 7.5e-60 233.8 131 90.8
GSVIVG01031574001 Vitis vinifera HOM05D003908 ORTHO05D004488 7.5e-60 233.8 131 90.1
COL.COLO4_15346 Corchorus olitorius HOM05D003908 ORTHO05D004488 9.8e-60 233.4 129 89.9
Glyma.05G135300 Glycine max HOM05D003908 ORTHO05D004488 1.3e-59 233.0 131 89.3
Glyma.08G090500 Glycine max HOM05D003908 ORTHO05D004488 1.3e-59 233.0 131 89.3
SalBow3G3620 Salvia bowleyana HOM05D003908 ORTHO05D004488 1.3e-59 233.0 131 90.1
TAR633G1149 Trochodendron aralioides HOM05D003908 ORTHO05D004488 1.3e-59 233.0 131 89.3
Gohir.A08G188000 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.7e-59 232.6 131 88.5
Potri.005G217600 Populus trichocarpa HOM05D003908 ORTHO05D004488 1.7e-59 232.6 131 90.1
Atru.chr4.2009 Acer truncatum HOM05D003908 ORTHO05D004488 3.7e-59 231.5 131 89.3
Phvul.002G186900 Phaseolus vulgaris HOM05D003908 ORTHO05D004488 3.7e-59 231.5 131 87.8
Gohir.A08G215400 Gossypium hirsutum HOM05D003908 ORTHO05D004488 4.9e-59 231.1 131 87.8
Gorai.004G246600 Gossypium raimondii HOM05D003908 ORTHO05D004488 4.9e-59 231.1 131 87.8
VMungo0251G3698 Vigna mungo HOM05D003908 ORTHO05D004488 4.9e-59 231.1 131 87.8
THA.LOC104825983 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 8.3e-59 230.3 131 88.5
Thecc.05G283700 Theobroma cacao HOM05D003908 ORTHO05D004488 8.3e-59 230.3 131 87.0
Atru.chr2.813 Acer truncatum HOM05D003908 ORTHO05D004488 1.1e-58 229.9 131 88.5
CANSAT21G0496 Cannabis sativa HOM05D003908 ORTHO05D004488 1.1e-58 229.9 131 90.8
ClCG03G017370 Citrullus lanatus HOM05D003908 ORTHO05D004488 1.1e-58 229.9 131 90.1
TWI12G1100 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 1.1e-58 229.9 131 88.5
Ah.02g111400 Amaranthus hybridus HOM05D003908 ORTHO05D004488 1.4e-58 229.6 129 89.1
CiPaw.08G123800 Carya illinoinensis HOM05D003908 ORTHO05D004488 1.4e-58 229.6 131 88.5
Lsat_1_v5_gn_6_91060 Lactuca sativa HOM05D003908 ORTHO05D004488 1.4e-58 229.6 131 87.8
Ca_18213_v3 Cicer arietinum L. HOM05D003908 ORTHO05D004488 1.9e-58 229.2 131 88.5
Cc09_g07930 Coffea canephora HOM05D003908 ORTHO05D004488 1.9e-58 229.2 131 88.5
MELO3C015218.2 Cucumis melo HOM05D003908 ORTHO05D004488 1.9e-58 229.2 129 90.7
CsaV3_1G042520 Cucumis sativus L. HOM05D003908 ORTHO05D004488 1.9e-58 229.2 129 90.7
Duzib106G0327 Durio zibethinus HOM05D003908 ORTHO05D004488 1.9e-58 229.2 129 87.6
ECA240G0363 Erigeron canadensis HOM05D003908 ORTHO05D004488 2.4e-58 228.8 131 87.8
ATR0787G044 Amborella trichopoda HOM05D003908 ORTHO05D004488 3.2e-58 228.4 131 90.1
Ciclev10002833m.g Citrus clementina HOM05D003908 ORTHO05D004488 3.2e-58 228.4 131 89.3
Lalb_Chr12g0209211 Lupinus albus HOM05D003908 ORTHO05D004488 3.2e-58 228.4 131 88.5
Hund02874 Selenicereus undatus HOM05D003908 ORTHO05D004488 3.2e-58 228.4 129 89.1
THA.LOC104801254 Tarenaya hassleriana HOM05D003908 ORTHO05D004488 3.2e-58 228.4 131 87.8
Cfa006421 Carpinus fangiana HOM05D003908 ORTHO05D004488 4.1e-58 228.0 131 87.8
Lj4g0023890 Lotus japonicus HOM05D003908 ORTHO05D004488 4.1e-58 228.0 131 87.0
Nn3g19495 Nelumbo nucifera HOM05D003908 ORTHO05D004488 5.4e-58 227.6 131 87.8
Sed0024016 Sechium edule HOM05D003908 ORTHO05D004488 5.4e-58 227.6 131 88.5
Prupe.5G006500 Prunus persica HOM05D003908 ORTHO05D004488 7.1e-58 227.3 131 87.0
Psat7g086640 Pisum sativum HOM05D003908 ORTHO05D004488 9.2e-58 226.9 131 87.0
PGR031G1854 Punica granatum HOM05D003908 ORTHO05D004488 9.2e-58 226.9 131 88.5
Zm00001eb330190 Zea mays HOM05D003908 ORTHO05D004488 9.2e-58 226.9 131 85.5
Gohir.D08G232100 Gossypium hirsutum HOM05D003908 ORTHO05D004488 1.2e-57 226.5 131 87.0
Prupe.6G005500 Prunus persica HOM05D003908 ORTHO05D004488 1.2e-57 226.5 131 87.0
QL03p025800 Quercus lobata HOM05D003908 ORTHO05D004488 1.2e-57 226.5 130 88.5
Manes.07G050600 Manihot esculenta HOM05D003908 ORTHO05D004488 2.1e-57 225.7 131 87.0
Sed0027410 Sechium edule HOM05D003908 ORTHO05D004488 2.1e-57 225.7 131 87.8
Os02g0824700 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 3.5e-57 224.9 131 86.3
Os04g0137500 Oryza sativa ssp. japonica HOM05D003908 ORTHO05D004488 3.5e-57 224.9 131 86.3
Eucgr.B02621 Eucalyptus grandis HOM05D003908 ORTHO05D004488 4.6e-57 224.6 131 86.3
Eucgr.C04384 Eucalyptus grandis HOM05D003908 ORTHO05D004488 4.6e-57 224.6 131 86.3
Sc17g0001030 Simmondsia chinensis HOM05D003908 ORTHO05D004488 4.6e-57 224.6 131 86.3
TPR.G34752 Trifolium pratense HOM05D003908 ORTHO05D004488 4.6e-57 224.6 131 84.7
Actinidia24932 Actinidia chinensis HOM05D005044 ORTHO05D006799 6.0e-57 224.2 123 91.1
EL10Ac5g10467 Beta vulgaris HOM05D003908 ORTHO05D004488 1.0e-56 223.4 130 86.2
Cpa.g.sc117.89 Carica papaya HOM05D003908 ORTHO05D004488 1.0e-56 223.4 131 85.5
Zm00001eb111070 Zea mays HOM05D003908 ORTHO05D004488 1.0e-56 223.4 131 84.0
CDE09G0316 Ceratophyllum demersum HOM05D003908 ORTHO05D004488 1.3e-56 223.0 129 85.3
HPP92_018775 Vanilla planifolia HOM05D003908 ORTHO05D004488 1.3e-56 223.0 131 83.2
HPP92_001854 Vanilla planifolia HOM05D003908 ORTHO05D004488 1.7e-56 222.6 131 84.0
Gohir.A13G052900 Gossypium hirsutum HOM05D003908 ORTHO05D004488 3.0e-56 221.9 131 86.3
TWI18G0751 Tripterygium wilfordii HOM05D003908 ORTHO05D004488 3.0e-56 221.9 131 85.5
Aa31LG5G2250 Aethionema arabicum HOM05D003908 ORTHO05D004488 5.1e-56 221.1 131 84.0
CSS0045088 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 5.1e-56 221.1 131 87.8
FvH4_6g02960 Fragaria vesca HOM05D003908 ORTHO05D004488 5.1e-56 221.1 131 84.7
Gorai.013G079800 Gossypium raimondii HOM05D003908 ORTHO05D004488 6.6e-56 220.7 131 86.3
FAN05G0658 Fragaria x ananassa HOM05D003908 ORTHO05D004488 1.9e-55 219.2 131 84.0
FAN14G5491 Fragaria x ananassa HOM05D003908 ORTHO05D004488 1.9e-55 219.2 131 84.0
FAN09G2689 Fragaria x ananassa HOM05D003908 ORTHO05D004488 3.3e-55 218.4 131 84.0
Gohir.D13G069500 Gossypium hirsutum HOM05D003908 ORTHO05D004488 4.3e-55 218.0 131 84.7
RcHm_v2.0_Chr3g0451151 Rosa chinensis HOM05D003908 ORTHO05D004488 5.6e-55 217.6 131 84.0
PSO210G0243 Papaver somniferum HOM05D003908 ORTHO05D004488 2.1e-54 215.7 131 84.7
PSO832G4196 Papaver somniferum HOM05D003908 ORTHO05D004488 2.1e-54 215.7 131 84.7
vmacro14877 Vaccinium macrocarpon HOM05D003908 ORTHO05D004488 2.1e-54 215.7 160 75.0
CARHR250910 Cardamine hirsuta HOM05D003908 ORTHO05D004488 4.7e-54 214.5 126 81.7
Thhalv10029066m.g Eutrema salsugineum HOM05D003908 ORTHO05D004488 6.2e-54 214.2 126 83.3
BcaB01g02026 Brassica carinata HOM05D003908 ORTHO05D004488 8.1e-54 213.8 126 82.5
BcaB01g02477 Brassica carinata HOM05D003908 ORTHO05D004488 8.1e-54 213.8 126 82.5
BcaC04g24002 Brassica carinata HOM05D003908 ORTHO05D004488 8.1e-54 213.8 126 82.5
A03p30970 Brassica napus HOM05D003908 ORTHO05D004488 8.1e-54 213.8 126 82.5
A09p02050 Brassica napus HOM05D003908 ORTHO05D004488 8.1e-54 213.8 126 82.5
C09p02140 Brassica napus HOM05D003908 ORTHO05D004488 8.1e-54 213.8 126 82.5
BolC9t53144H Brassica oleracea HOM05D003908 ORTHO05D004488 8.1e-54 213.8 126 82.5
PSO135G0069 Papaver somniferum HOM05D003908 ORTHO05D004488 1.4e-53 213.0 131 83.2
BcaC01g06745 Brassica carinata HOM05D003908 ORTHO05D004488 1.8e-53 212.6 126 81.7
C03p37740 Brassica napus HOM05D003908 ORTHO05D004488 1.8e-53 212.6 126 81.7
BolC3t16064H Brassica oleracea HOM05D003908 ORTHO05D004488 1.8e-53 212.6 126 81.7
Sp6g02530 Schrenkiella parvula HOM05D003908 ORTHO05D004488 1.8e-53 212.6 126 82.5
Dinv04731 Davidia involucrata HOM05D003908 ORTHO05D004488 2.3e-53 212.2 115 91.3
MD04G1224300 Malus domestica HOM05D003908 ORTHO05D004488 2.3e-53 212.2 115 90.4
MD12G1241000 Malus domestica HOM05D003908 ORTHO05D004488 2.3e-53 212.2 115 91.3
AL6G50430 Arabidopsis lyrata HOM05D003908 ORTHO05D004488 3.1e-53 211.8 126 81.0
AT4G02620 Arabidopsis thaliana HOM05D003908 ORTHO05D004488 3.1e-53 211.8 126 81.0
Carub.0006s3452 Capsella rubella HOM05D003908 ORTHO05D004488 3.1e-53 211.8 126 81.0
PSO384G1262 Papaver somniferum HOM05D003908 ORTHO05D004488 4.0e-53 211.5 131 83.2
HanXRQChr03g0088561 Helianthus annuus HOM05D003908 ORTHO05D004488 6.8e-53 210.7 115 91.3
BraA09t35854Z Brassica rapa HOM05D003908 ORTHO05D004488 3.4e-52 208.4 129 80.6
BraA03t12274Z Brassica rapa HOM05D003908 ORTHO05D004488 9.9e-52 206.8 133 78.2
arahy.Tifrunner.gnm1.ann1.XQ21SD Arachis hypogaea HOM05D003908 ORTHO05D004488 1.7e-51 206.1 110 92.7
Nitab4.5_0002305g0050 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.7e-51 206.1 111 92.8
Duzib133G0635 Durio zibethinus HOM05D003908 ORTHO05D004488 3.7e-51 204.9 115 88.7
C02p39240 Brassica napus HOM05D003908 ORTHO05D004488 2.4e-50 202.2 139 74.1
Ciclev10022651m.g Citrus clementina HOM05D003908 ORTHO05D004488 2.4e-50 202.2 156 71.2
BolC2t09935H Brassica oleracea HOM05D003908 ORTHO05D004488 7.1e-50 200.7 139 73.4
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 6.0e-49 197.6 114 84.2
CSS0024256 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.0e-48 196.8 105 94.3
CSS0029390 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.0e-48 196.8 105 94.3
Peaxi162Scf00198g01017 Petunia axillaris HOM05D003908 ORTHO05D004488 1.0e-48 196.8 122 83.6
CSS0046821 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.3e-48 196.4 102 96.1
Pp3c6_17470 Physcomitrium patens HOM05D003908 ORTHO05D004488 1.3e-48 196.4 125 74.4
Pp3c25_8080 Physcomitrium patens HOM05D003908 ORTHO05D004488 2.3e-48 195.7 128 74.2
CSS0044738 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 5.1e-48 194.5 117 85.5
SMO367G0680 Selaginella moellendorffii HOM05D003908 ORTHO05D004488 8.6e-48 193.7 126 72.2
Mapoly0079s0004 Marchantia polymorpha HOM05D003908 ORTHO05D004488 1.1e-47 193.4 123 74.8
Haze_21722 Corylus avellana HOM05D003908 ORTHO05D004488 3.6e-46 188.3 129 75.2
CSS0043230 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 1.8e-45 186.0 102 91.2
CDE11G1041 Ceratophyllum demersum HOM05D005443 ORTHO05D004488 4.0e-45 184.9 100 89.0
CBR_g38932 Chara braunii HOM05D003908 ORTHO05D004488 5.8e-44 181.0 122 70.5
Actinidia04661 Actinidia chinensis HOM05D003908 ORTHO05D004488 5.4e-42 174.5 115 79.1
Actinidia21151 Actinidia chinensis HOM05D003908 ORTHO05D004488 5.4e-42 174.5 115 79.1
CSS0038153 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 2.7e-41 172.2 102 86.3
COL.COLO4_30210 Corchorus olitorius HOM05D003908 ORTHO05D004488 3.0e-40 168.7 131 71.0
BcaC03g16154 Brassica carinata HOM05D003908 ORTHO05D004488 3.9e-40 168.3 98 80.6
PRCOL_00000544 Prasinoderma coloniale HOM05D003908 ORTHO05D004488 9.6e-39 163.7 115 66.1
MCO03G460 Micromonas commoda HOM05D003908 ORTHO05D004488 1.6e-38 162.9 115 68.7
Hund09564 Selenicereus undatus HOM05D003908 ORTHO05D004488 4.8e-38 161.4 129 68.2
Cre10.g446550 Chlamydomonas reinhardtii HOM05D003908 ORTHO05D004488 2.4e-37 159.1 115 63.5
Haze_04363 Corylus avellana HOM05D003908 ORTHO05D004488 6.9e-37 157.5 89 87.6
TAR362G1230 Trochodendron aralioides HOM05D003908 ORTHO05D004488 9.9e-36 153.7 103 76.7
COL.COLO4_06708 Corchorus olitorius HOM05D003908 ORTHO05D004488 1.3e-35 153.3 82 91.5
Ah.11g050040 Amaranthus hybridus HOM05D005044 ORTHO05D006799 2.9e-35 152.1 82 90.2
CiPaw.04G181400 Carya illinoinensis HOM05D003908 ORTHO05D004488 1.6e-33 146.4 82 85.4
Lalb_Chr20g0122801 Lupinus albus HOM05D003908 ORTHO05D004488 9.0e-29 130.6 80 82.5
SEGI_40634 Sequoiadendron giganteum HOM05D003908 ORTHO05D004488 3.8e-27 125.2 78 78.2
AagrBONN_evm.TU.Sc2ySwM_368.148 Anthoceros agrestis HOM05D003908 ORTHO05D004488 6.0e-25 117.9 76 72.4
BcaB05g23651 Brassica carinata HOM05D003908 ORTHO05D004488 7.9e-25 117.5 153 47.7
Haze_26154 Corylus avellana HOM05D003908 ORTHO05D004488 3.0e-24 115.5 112 46.4
Nitab4.5_0000138g0160 Nicotiana tabacum HOM05D003908 ORTHO05D004488 1.5e-23 113.2 63 87.3
Nitab4.5_0008708g0010 Nicotiana tabacum HOM05D003908 ORTHO05D004488 4.3e-23 111.7 68 80.9
Actinidia30711 Actinidia chinensis HOM05D005044 ORTHO05D006799 7.4e-23 110.9 69 81.2
Lalb_Chr20g0122811 Lupinus albus HOM05D003908 ORTHO05D004488 5.8e-20 101.3 55 90.9
DCAR_018445 Daucus carota HOM05D003908 ORTHO05D004488 2.2e-19 99.4 52 92.3
DCAR_012514 Daucus carota HOM05D003908 ORTHO05D004488 2.9e-19 99.0 52 92.3
SHI24544 Sapria himalayana HOM05D003908 ORTHO05D000023 8.4e-19 97.4 80 62.5
Sopen12g012850 Solanum pennellii HOM05D003908 ORTHO05D004488 1.9e-15 86.3 58 79.3
AUR62011951 Chenopodium quinoa HOM05D003908 ORTHO05D004488 1.1e-13 80.5 48 83.3
CSS0012932 Camellia sinensis var. sinensis HOM05D003908 ORTHO05D004488 5.9e-12 74.7 35 94.3
Peaxi162Scf01294g00317 Petunia axillaris HOM05D003908 ORTHO05D004488 7.2e-10 67.8 35 88.6


User provided reference genes

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