Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1653.6 817 100.0
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 0.0e+00 1647.1 817 99.8
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 0.0e+00 1306.6 817 78.8
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 0.0e+00 1263.1 854 74.1
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 0.0e+00 1223.4 817 73.8
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 0.0e+00 1163.7 816 70.2
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 0.0e+00 1152.1 817 69.2
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 0.0e+00 1151.3 816 69.9
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1141.7 817 69.2
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 0.0e+00 1141.3 816 69.2
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1136.7 818 68.6
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 0.0e+00 1135.2 817 68.8
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 0.0e+00 1128.2 823 68.3
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 0.0e+00 1119.0 822 68.2
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 0.0e+00 1103.2 837 68.7
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 0.0e+00 1103.2 818 67.8
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 0.0e+00 1101.3 815 65.4
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 0.0e+00 1099.0 880 63.5
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 0.0e+00 1092.4 820 66.1
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 0.0e+00 1091.6 817 65.9
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 0.0e+00 1091.3 820 66.6
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 0.0e+00 1083.6 814 65.0
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 0.0e+00 1083.6 818 64.5
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 0.0e+00 1082.8 815 65.8
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 0.0e+00 1082.4 820 65.2
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 0.0e+00 1076.6 820 64.9
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 2.8e-311 1071.6 820 64.5
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 5.5e-310 1067.4 817 65.7
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 1.0e-308 1063.1 823 65.4
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 1.0e-308 1063.1 817 64.9
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 2.3e-308 1062.0 817 64.7
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 5.2e-308 1060.8 787 67.2
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 6.7e-308 1060.4 817 65.9
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 3.3e-307 1058.1 818 65.3
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 7.5e-307 1057.0 819 65.1
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 1.3e-306 1056.2 817 65.6
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 3.7e-306 1054.7 817 63.3
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 3.7e-306 1054.7 817 65.7
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 7.0e-305 1050.4 818 63.9
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 5.0e-303 1044.3 818 63.7
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 8.5e-303 1043.5 821 64.2
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 1.9e-302 1042.3 818 64.3
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 1.8e-300 1035.8 816 64.2
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 5.2e-300 1034.2 813 63.5
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 8.8e-300 1033.5 817 64.1
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 1.5e-299 1032.7 818 64.3
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 2.8e-298 1028.5 814 63.5
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.8e-297 1025.8 829 63.7
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 1.8e-297 1025.8 817 62.9
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.6e-296 1022.7 818 63.9
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 2.1e-293 1012.3 818 62.8
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 3.6e-293 1011.5 815 62.3
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 3.6e-293 1011.5 834 63.1
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 4.7e-293 1011.1 819 63.4
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 6.1e-293 1010.7 816 61.6
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 7.5e-291 1003.8 818 62.6
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 6.3e-290 1000.7 820 61.8
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.7e-288 995.3 881 59.5
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 1.6e-285 986.1 818 62.5
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 4.0e-284 981.5 845 60.5
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 3.4e-283 978.4 818 62.0
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 6.4e-282 974.2 818 60.9
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 4.1e-281 971.5 815 59.1
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 3.0e-279 965.3 821 58.7
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 3.0e-279 965.3 821 58.6
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 6.6e-279 964.1 824 58.5
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 2.5e-278 962.2 818 61.0
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 3.3e-278 961.8 822 58.5
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 7.3e-278 960.7 825 58.8
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.5e-275 953.0 825 58.1
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 5.4e-273 944.5 820 58.0
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 1.6e-272 943.0 821 58.2
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 2.1e-272 942.6 820 57.9
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 2.1e-272 942.6 820 57.9
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 6.0e-272 941.0 816 58.6
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 2.3e-271 939.1 829 57.7
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 6.6e-271 937.6 830 59.8
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 8.6e-271 937.2 816 58.0
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 1.9e-270 936.0 827 57.9
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 3.3e-270 935.3 820 59.3
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 5.6e-270 934.5 817 58.1
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 7.3e-270 934.1 821 59.4
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 3.6e-269 931.8 822 59.6
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 5.2e-268 927.9 820 58.2
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 3.3e-262 908.7 817 58.4
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 4.3e-262 908.3 537 82.3
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 5.2e-260 901.4 814 57.0
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 2.6e-259 899.0 811 56.4
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 3.4e-259 898.7 816 56.4
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 4.6e-256 888.3 816 55.9
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 2.2e-250 869.4 626 66.5
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 3.2e-249 865.5 818 55.5
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 7.1e-249 864.4 583 71.9
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 4.6e-248 861.7 820 53.8
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 8.1e-245 850.9 815 54.0
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 1.8e-239 833.2 823 51.6
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 4.3e-238 828.6 888 52.1
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 5.3e-236 821.6 748 57.4
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 6.9e-236 821.2 817 52.3
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 1.5e-235 820.1 820 51.7
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 6.3e-205 718.4 461 76.8
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 7.7e-187 658.3 824 45.5
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 3.0e-183 646.4 822 44.5
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 2.6e-182 643.3 832 43.4
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 9.5e-177 624.8 853 43.3
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 4.6e-163 579.3 825 42.2
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 1.1e-153 548.1 590 51.5
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.8e-151 540.8 475 60.6
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 5.1e-146 522.7 847 36.0
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 1.1e-145 521.5 818 40.7
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 2.5e-145 520.4 689 43.3
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 1.6e-144 517.7 823 39.2
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 8.4e-141 505.4 837 36.4
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 2.4e-135 487.3 858 36.5
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 1.1e-127 461.8 338 65.4
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 1.2e-126 458.4 825 38.2
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 2.4e-124 450.7 843 34.3
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 3.7e-112 410.2 422 53.3
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 6.7e-98 362.8 760 32.0
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 2.7e-78 297.7 403 42.7
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 6.5e-69 266.5 204 69.1
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 8.8e-66 256.1 745 29.3
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 2.3e-61 241.5 281 48.0
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 3.3e-60 237.7 280 47.9
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 3.3e-60 237.7 280 47.9
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 9.5e-60 236.1 155 72.9
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.5e-49 202.2 164 62.2
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 7.5e-49 199.9 207 52.2
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 7.0e-47 193.4 849 24.3
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 4.6e-38 164.1 473 29.6
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 1.1e-34 152.9 138 58.7
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 2.6e-33 148.3 104 68.3
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 3.4e-33 147.9 132 56.1
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 1.9e-20 105.5 97 56.7
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 9.0e-18 96.7 63 73.0
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 4.5e-17 94.4 64 71.9
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 5.4e-15 87.4 66 65.2
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 6.0e-14 84.0 107 42.1
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 5.1e-13 80.9 107 41.1
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 8.7e-13 80.1 104 39.4
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 6.9e-10 70.5 49 65.3
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 1.2e-09 69.7 49 63.3
Actinidia31528 Actinidia chinensis HOM05D004893 ORTHO05D006320 2.2e-08 65.5 40 77.5
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 6.4e-08 63.9 93 41.9
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 1.1e-07 63.2 43 65.1
BcaC06g36526 Brassica carinata HOM05D004893 ORTHO05D032397 2.1e-06 58.9 39 71.8
C07p03290 Brassica napus HOM05D004893 ORTHO05D032397 2.1e-06 58.9 39 71.8
BolC7t40730H Brassica oleracea HOM05D004893 ORTHO05D032397 2.1e-06 58.9 39 71.8


User provided reference genes

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