Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 6.4e-108 394.0 192 100.0
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 4.9e-92 341.3 189 87.8
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 4.2e-91 338.2 189 86.2
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 1.1e-88 330.1 189 84.7
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 2.5e-88 328.9 189 85.2
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 7.3e-88 327.4 190 83.7
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 6.2e-87 324.3 189 84.1
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 6.4e-84 314.3 189 78.8
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 1.1e-83 313.5 189 78.8
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 9.3e-83 310.5 189 78.3
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 1.2e-82 310.1 188 79.8
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 6.0e-82 307.8 189 78.8
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 2.3e-81 305.8 189 78.3
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 5.1e-81 304.7 189 78.3
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 1.1e-80 303.5 189 76.7
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 1.6e-79 299.7 189 77.2
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 1.6e-79 299.7 189 75.1
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 3.7e-79 298.5 189 75.7
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 3.7e-79 298.5 189 77.2
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 4.8e-79 298.1 189 76.7
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 6.2e-79 297.7 189 74.1
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 1.4e-78 296.6 189 75.7
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 2.4e-78 295.8 189 75.1
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 4.0e-78 295.0 189 75.1
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 4.0e-78 295.0 189 72.0
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 1.5e-77 293.1 189 74.1
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 3.4e-77 292.0 189 73.5
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 3.4e-77 292.0 189 73.0
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 3.4e-77 292.0 190 73.2
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 9.9e-77 290.4 187 75.4
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 3.8e-76 288.5 189 70.4
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 4.9e-76 288.1 189 73.0
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 6.4e-76 287.7 190 74.2
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 1.1e-75 287.0 187 72.7
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 1.4e-75 286.6 189 72.5
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 2.4e-75 285.8 189 72.0
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 2.4e-75 285.8 189 72.0
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 3.2e-75 285.4 187 72.7
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 3.2e-75 285.4 189 70.4
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 1.6e-74 283.1 189 70.4
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 2.1e-74 282.7 189 70.4
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 2.1e-74 282.7 188 71.3
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 6.0e-74 281.2 254 59.1
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 7.9e-74 280.8 190 71.1
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 7.9e-74 280.8 190 71.1
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 2.3e-73 279.3 190 70.5
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 2.3e-73 279.3 189 69.8
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 2.3e-73 279.3 190 70.5
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 5.1e-73 278.1 189 70.9
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 6.7e-73 277.7 186 71.0
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 1.1e-72 276.9 189 70.9
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 1.9e-72 276.2 187 72.7
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 2.5e-72 275.8 189 69.8
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 2.5e-72 275.8 189 68.3
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 7.4e-72 274.2 189 68.3
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 1.3e-71 273.5 189 68.8
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 2.8e-71 272.3 186 69.4
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 3.7e-71 271.9 189 69.8
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 3.7e-71 271.9 189 66.7
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 6.2e-71 271.2 189 65.6
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 6.2e-71 271.2 187 70.6
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 2.4e-70 269.2 189 69.3
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 6.9e-70 267.7 190 70.0
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 3.4e-69 265.4 190 67.9
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 3.4e-69 265.4 189 68.8
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 3.4e-69 265.4 189 68.3
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 7.6e-69 264.2 190 66.8
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 7.6e-69 264.2 190 66.8
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 1.0e-68 263.8 189 68.8
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 1.7e-68 263.1 190 67.4
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 2.2e-68 262.7 191 68.1
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 3.8e-68 261.9 190 66.8
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 4.9e-68 261.5 191 67.0
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 1.9e-67 259.6 190 66.3
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 3.2e-67 258.8 190 66.8
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 5.5e-67 258.1 190 66.8
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 5.5e-67 258.1 186 67.7
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 7.1e-67 257.7 191 68.6
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 9.3e-67 257.3 189 66.1
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 1.6e-66 256.5 189 66.7
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 2.7e-66 255.8 197 61.4
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 3.5e-66 255.4 240 52.5
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 3.5e-66 255.4 189 66.1
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 1.3e-65 253.4 189 63.0
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 5.1e-65 251.5 189 65.1
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 5.1e-65 251.5 198 66.2
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 1.5e-64 250.0 190 65.3
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 3.3e-64 248.8 172 68.0
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 4.3e-64 248.4 196 63.8
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 8.5e-60 234.2 190 58.9
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 4.2e-59 231.9 239 54.4
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 7.2e-59 231.1 138 78.3
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 8.8e-57 224.2 189 62.4
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 3.1e-54 215.7 186 54.8
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 4.1e-54 215.3 138 73.2
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 3.4e-53 212.2 152 63.8
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 7.7e-53 211.1 185 53.0
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 1.9e-51 206.5 184 53.3
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 2.5e-51 206.1 172 59.9
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 7.9e-50 201.1 187 54.0
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 4.4e-40 168.7 146 56.8
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 2.2e-39 166.4 104 73.1
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 2.8e-39 166.0 120 67.5
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 1.5e-32 143.7 204 40.7
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 5.9e-29 131.7 136 55.9
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 9.4e-27 124.4 210 40.0
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 7.2e-19 98.2 194 35.1
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 2.1e-18 96.7 156 38.5
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 2.8e-18 96.3 195 33.3
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 1.4e-17 94.0 190 31.1
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 4.4e-16 89.0 84 52.4
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 1.7e-12 77.0 156 32.7
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 2.1e-10 70.1 164 29.9
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 4.7e-10 68.9 51 58.8
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.0e-09 67.8 66 53.0
TPR.G17639 Trifolium pratense HOM05D007231 ORTHO05D009024 2.2e-07 60.1 45 60.0
TPR.G23952 Trifolium pratense HOM05D007231 ORTHO05D009024 2.2e-07 60.1 45 60.0


User provided reference genes

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