Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040006 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 1.6e-169 599.4 304 100.0
CSS0008615 Camellia sinensis var. sinensis HOM05D005447 ORTHO05D006730 1.5e-119 433.3 252 84.5
Dinv27967 Davidia involucrata HOM05D005447 ORTHO05D006730 1.2e-116 423.7 252 82.9
vmacro00161 Vaccinium macrocarpon HOM05D005447 ORTHO05D006730 2.0e-116 422.9 287 77.0
Actinidia30302 Actinidia chinensis HOM05D005447 ORTHO05D006730 2.5e-114 416.0 253 83.4
Hma1.2p1_2708F.1_g327220 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 4.5e-108 395.2 259 76.8
Sopen12g031820 Solanum pennellii HOM05D005447 ORTHO05D006730 4.5e-108 395.2 257 74.3
Hma1.2p1_1213F.1_g267530 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 1.3e-107 393.7 259 76.4
Cpa.g.sc7.194 Carica papaya HOM05D005447 ORTHO05D006730 2.9e-107 392.5 267 73.0
PGSC0003DMG400029302 Solanum tuberosum HOM05D005447 ORTHO05D006730 2.9e-107 392.5 257 74.3
Solyc12g095920.2 Solanum lycopersicum HOM05D005447 ORTHO05D006730 3.8e-107 392.1 257 73.9
EL10Ac2g03925 Beta vulgaris HOM05D005447 ORTHO05D006730 8.6e-107 391.0 265 74.0
Lsat_1_v5_gn_6_7400 Lactuca sativa HOM05D005447 ORTHO05D006730 4.2e-106 388.7 260 74.2
Eucgr.C03005 Eucalyptus grandis HOM05D005447 ORTHO05D006730 2.1e-105 386.3 257 73.5
TWI34G1470 Tripterygium wilfordii HOM05D005447 ORTHO05D006730 1.0e-104 384.0 255 75.7
Cc08_g10370 Coffea canephora HOM05D005447 ORTHO05D006730 2.3e-104 382.9 265 72.5
Nitab4.5_0000738g0170 Nicotiana tabacum HOM05D005447 ORTHO05D006730 2.3e-104 382.9 255 74.5
Prupe.1G414700 Prunus persica HOM05D005447 ORTHO05D006730 2.3e-104 382.9 264 74.6
HanXRQChr09g0251181 Helianthus annuus HOM05D005447 ORTHO05D006730 5.2e-104 381.7 258 74.8
Cfa017935 Carpinus fangiana HOM05D005447 ORTHO05D006730 2.6e-103 379.4 253 74.7
Lju3103C0G11 Lonicera japonica HOM05D005447 ORTHO05D006730 2.6e-103 379.4 287 67.9
Ciclev10009241m.g Citrus clementina HOM05D005447 ORTHO05D006730 5.7e-103 378.3 256 71.5
Peaxi162Scf00436g00831 Petunia axillaris HOM05D005447 ORTHO05D006730 9.8e-103 377.5 255 73.3
Hma1.2p1_1944F.1_g308590 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 1.3e-102 377.1 258 74.8
RcHm_v2.0_Chr6g0310521 Rosa chinensis HOM05D005447 ORTHO05D006730 1.3e-102 377.1 256 75.0
TAR626G0638 Trochodendron aralioides HOM05D005447 ORTHO05D006730 1.7e-102 376.7 247 76.1
Hund03355 Selenicereus undatus HOM05D005447 ORTHO05D006730 2.2e-102 376.3 252 73.4
Peaxi162Scf00064g01636 Petunia axillaris HOM05D005447 ORTHO05D006730 3.7e-102 375.6 242 76.0
ECA233G2666 Erigeron canadensis HOM05D005447 ORTHO05D006730 4.9e-102 375.2 264 71.6
MD08G1073300 Malus domestica HOM05D005447 ORTHO05D006730 1.8e-101 373.2 256 73.8
Nn8g38949 Nelumbo nucifera HOM05D005447 ORTHO05D006730 5.4e-101 371.7 256 72.3
CiPaw.16G030000 Carya illinoinensis HOM05D005447 ORTHO05D006730 7.0e-101 371.3 256 71.9
Manes.16G078100 Manihot esculenta HOM05D005447 ORTHO05D006730 2.7e-100 369.4 256 72.7
Nitab4.5_0011306g0050 Nicotiana tabacum HOM05D005447 ORTHO05D006730 1.3e-99 367.1 270 69.3
Hma1.2p1_0482F.1_g162683 Hydrangea macrophylla HOM05D005447 ORTHO05D006730 5.0e-99 365.2 234 78.6
Atru.chr7.2018 Acer truncatum HOM05D005447 ORTHO05D006730 2.5e-98 362.8 256 71.1
CANSAT25G3707 Cannabis sativa HOM05D005447 ORTHO05D006730 3.3e-98 362.5 242 73.1
QL02p001555 Quercus lobata HOM05D005447 ORTHO05D006730 1.2e-97 360.5 253 71.5
Potri.018G061800 Populus trichocarpa HOM05D005447 ORTHO05D006730 1.6e-97 360.1 258 72.9
Prupe.6G150100 Prunus persica HOM05D005447 ORTHO05D006730 1.6e-97 360.1 250 72.4
PGR044G0161 Punica granatum HOM05D005447 ORTHO05D006730 6.1e-97 358.2 262 69.1
Ca_15869_v3 Cicer arietinum L. HOM05D005447 ORTHO05D006730 1.0e-96 357.5 261 68.2
Sabra18G0050000 Salix brachista HOM05D005447 ORTHO05D006730 2.3e-96 356.3 244 73.8
Lalb_Chr08g0245101 Lupinus albus HOM05D005447 ORTHO05D006730 4.0e-96 355.5 255 69.4
arahy.Tifrunner.gnm1.ann1.H6GXLW Arachis hypogaea HOM05D005447 ORTHO05D006730 5.2e-96 355.1 260 67.7
FAN27G1388 Fragaria x ananassa HOM05D005447 ORTHO05D006730 5.2e-96 355.1 250 71.2
FvH4_2g32160 Fragaria vesca HOM05D005447 ORTHO05D006730 6.8e-96 354.8 257 70.0
Aqoxy6G02809 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 8.9e-96 354.4 258 68.6
arahy.Tifrunner.gnm1.ann1.PT16FZ Arachis hypogaea HOM05D005447 ORTHO05D006730 1.5e-95 353.6 260 67.3
Psat5g036560 Pisum sativum HOM05D005447 ORTHO05D006730 1.5e-95 353.6 262 64.9
Sc06g0000920 Simmondsia chinensis HOM05D005447 ORTHO05D006730 1.5e-95 353.6 233 74.2
SGA_v2.0_scaffold1040G53805 Striga asiatica HOM05D005447 ORTHO05D006730 1.5e-95 353.6 262 66.4
Thecc.09G051400 Theobroma cacao HOM05D005447 ORTHO05D006730 3.4e-95 352.4 244 73.8
Sed0025565 Sechium edule HOM05D005447 ORTHO05D006730 1.3e-94 350.5 252 68.7
Lj1g0020487 Lotus japonicus HOM05D005447 ORTHO05D006730 2.2e-94 349.7 256 66.8
Medtr3g081440 Medicago truncatula HOM05D005447 ORTHO05D006730 2.2e-94 349.7 249 69.5
Aqoxy7G03929 Aquilegia oxysepala HOM05D005447 ORTHO05D006730 2.9e-94 349.4 259 68.0
Migut.A00152 Erythranthe guttata HOM05D005447 ORTHO05D006730 4.9e-94 348.6 255 67.8
Gorai.009G046500 Gossypium raimondii HOM05D005447 ORTHO05D006730 4.9e-94 348.6 257 69.6
Gohir.A05G043700 Gossypium hirsutum HOM05D005447 ORTHO05D006730 6.4e-94 348.2 257 69.6
SalBow4G2766 Salvia bowleyana HOM05D005447 ORTHO05D006730 6.4e-94 348.2 232 71.1
Glyma.06G051000 Glycine max HOM05D005447 ORTHO05D006730 8.3e-94 347.8 262 67.2
Duzib187G1160 Durio zibethinus HOM05D005447 ORTHO05D006730 1.1e-93 347.4 267 68.2
Gohir.D05G045300 Gossypium hirsutum HOM05D005447 ORTHO05D006730 1.1e-93 347.4 257 69.3
PSO832G2924 Papaver somniferum HOM05D005447 ORTHO05D006730 1.4e-93 347.1 251 70.9
PSO063G2264 Papaver somniferum HOM05D005447 ORTHO05D006730 2.4e-93 346.3 251 70.9
AUR62022047 Chenopodium quinoa HOM05D005447 ORTHO05D006730 4.1e-93 345.5 248 71.0
C07p59440 Brassica napus HOM05D005447 ORTHO05D006730 7.0e-93 344.7 243 66.7
BolC7t46387H Brassica oleracea HOM05D005447 ORTHO05D006730 7.0e-93 344.7 243 66.7
MSTRG.11670 Avicennia marina HOM05D005447 ORTHO05D006730 9.2e-93 344.4 235 70.2
Duzib168G1543 Durio zibethinus HOM05D005447 ORTHO05D006730 2.0e-92 343.2 250 71.6
THA.LOC104803734 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 6.0e-92 341.7 229 71.6
CsaV3_4G035510 Cucumis sativus L. HOM05D005447 ORTHO05D006730 7.8e-92 341.3 234 69.7
MELO3C016858.2 Cucumis melo HOM05D005447 ORTHO05D006730 1.0e-91 340.9 242 68.6
Phvul.009G076500 Phaseolus vulgaris HOM05D005447 ORTHO05D006730 3.9e-91 339.0 259 64.9
DCAR_004444 Daucus carota HOM05D005447 ORTHO05D006730 5.0e-91 338.6 256 66.4
A03p61720 Brassica napus HOM05D005447 ORTHO05D006730 6.6e-91 338.2 243 65.4
BraA03t15210Z Brassica rapa HOM05D005447 ORTHO05D006730 6.6e-91 338.2 243 65.4
VMungo1309G1567 Vigna mungo HOM05D005447 ORTHO05D006730 8.6e-91 337.8 261 63.6
Sp7g30740 Schrenkiella parvula HOM05D005447 ORTHO05D006730 7.3e-90 334.7 237 67.9
Thhalv10025994m.g Eutrema salsugineum HOM05D005447 ORTHO05D006730 9.5e-90 334.3 247 66.0
DCAR_004445 Daucus carota HOM05D005447 ORTHO05D006730 1.2e-89 334.0 256 64.5
HPP92_026778 Vanilla planifolia HOM05D005447 ORTHO05D006730 1.2e-89 334.0 256 65.6
BcaNung02148 Brassica carinata HOM05D005447 ORTHO05D006730 2.8e-89 332.8 243 65.4
unitig_748.g8015 Utricularia gibba HOM05D005447 ORTHO05D006730 2.8e-89 332.8 251 65.3
AL7G18730 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 8.0e-89 331.3 239 66.1
AT4G32960 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 1.1e-88 330.9 239 66.1
Carub.0007s0752 Capsella rubella HOM05D005447 ORTHO05D006730 1.1e-88 330.9 239 65.7
CARHR240980 Cardamine hirsuta HOM05D005447 ORTHO05D006730 1.4e-88 330.5 237 66.7
Aa31sc248G10 Aethionema arabicum HOM05D005447 ORTHO05D006730 1.8e-88 330.1 254 63.8
Lj7C280G4 Lonicera japonica HOM05D005447 ORTHO05D006730 1.2e-87 327.4 287 61.7
Psat5g106840 Pisum sativum HOM05D005447 ORTHO05D006730 1.2e-87 327.4 258 63.6
AUR62009180 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.1e-85 320.9 213 75.1
ATR0789G081 Amborella trichopoda HOM05D005447 ORTHO05D006730 2.4e-85 319.7 260 62.7
COL.COLO4_21030 Corchorus olitorius HOM05D005447 ORTHO05D006730 2.1e-84 316.6 257 63.8
THA.LOC104818575 Tarenaya hassleriana HOM05D005447 ORTHO05D006730 2.4e-77 293.1 253 57.7
CARHR240970 Cardamine hirsuta HOM05D005447 ORTHO05D006730 7.8e-76 288.1 266 56.0
Carub.0007s0751 Capsella rubella HOM05D005447 ORTHO05D006730 5.1e-75 285.4 238 59.7
AT4G32970 Arabidopsis thaliana HOM05D005447 ORTHO05D006730 2.8e-73 279.6 259 55.2
AL7G18720 Arabidopsis lyrata HOM05D005447 ORTHO05D006730 3.6e-73 279.3 245 59.2
Nitab4.5_0001179g0010 Nicotiana tabacum HOM05D005447 ORTHO05D006730 6.8e-72 275.0 191 71.7
Os06g0150100 Oryza sativa ssp. japonica HOM05D005447 ORTHO05D006730 6.8e-72 275.0 282 49.3
Haze_18213 Corylus avellana HOM05D005447 ORTHO05D006730 1.2e-71 274.2 168 80.4
AUR62022045 Chenopodium quinoa HOM05D005447 ORTHO05D006730 3.4e-71 272.7 162 79.6
Ah.11g044670 Amaranthus hybridus HOM05D005447 ORTHO05D006730 6.4e-70 268.5 244 57.0
Oeu057690.3 Olea europaea HOM05D005447 ORTHO05D006730 1.9e-69 266.9 171 75.4
SEGI_08476 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 1.0e-67 261.2 207 60.4
Zm00001eb270840 Zea mays HOM05D005447 ORTHO05D006730 1.1e-66 257.7 264 50.0
CDE04G0748 Ceratophyllum demersum HOM05D005447 ORTHO05D006730 3.6e-65 252.7 176 69.9
Pp3c6_24590 Physcomitrium patens HOM05D005447 ORTHO05D006730 6.9e-64 248.4 266 48.9
ClCG05G017740 Citrullus lanatus HOM05D005447 ORTHO05D006730 1.2e-60 237.7 164 68.9
FAN15G0839 Fragaria x ananassa HOM05D005447 ORTHO05D006730 4.3e-58 229.2 145 76.6
Mapoly0129s0035 Marchantia polymorpha HOM05D005447 ORTHO05D006730 2.4e-56 223.4 221 48.4
Nitab4.5_0000359g0050 Nicotiana tabacum HOM05D006502 ORTHO05D006730 6.7e-51 205.3 669 28.1
Eucgr.C03947 Eucalyptus grandis HOM05D005447 ORTHO05D006730 1.3e-49 201.1 172 61.0
CBR_g6395 Chara braunii HOM05D005447 ORTHO05D006730 2.1e-49 200.3 233 44.6
SMO367G0921 Selaginella moellendorffii HOM05D005447 ORTHO05D006730 9.0e-48 194.9 217 45.2
AUR62009181 Chenopodium quinoa HOM05D005447 ORTHO05D006730 3.4e-47 193.0 128 76.6
Oeu036349.1 Olea europaea HOM05D005447 ORTHO05D006730 1.0e-43 181.4 152 65.8
AagrBONN_evm.TU.Sc2ySwM_344.4531 Anthoceros agrestis HOM05D005447 ORTHO05D006730 3.9e-43 179.5 192 49.0
FAN24G0255 Fragaria x ananassa HOM05D005447 ORTHO05D006730 3.9e-43 179.5 144 66.0
FAN20G2744 Fragaria x ananassa HOM05D005447 ORTHO05D006730 1.1e-42 177.9 144 66.0
MSTRG.25940 Avicennia marina HOM05D005447 ORTHO05D006730 1.9e-37 160.6 96 75.0
Actinidia01202 Actinidia chinensis HOM05D005447 ORTHO05D006730 6.3e-33 145.6 95 74.7
GSVIVG01035346001 Vitis vinifera HOM05D005447 ORTHO05D006730 3.4e-31 139.8 91 75.8
VMungo0251G2120 Vigna mungo HOM05D005447 ORTHO05D006730 1.1e-29 134.8 150 46.7
VMungo0540G0355 Vigna mungo HOM05D005447 ORTHO05D006730 1.1e-29 134.8 106 61.3
SEGI_23140 Sequoiadendron giganteum HOM05D005447 ORTHO05D006730 2.0e-26 124.0 127 50.4
C01p05700 Brassica napus HOM05D005447 ORTHO05D006730 1.8e-24 117.5 85 70.6
BolC1t00551H Brassica oleracea HOM05D005447 ORTHO05D006730 1.8e-24 117.5 85 70.6
AUR62025497 Chenopodium quinoa HOM05D005447 ORTHO05D006730 8.5e-22 108.6 86 66.3
AUR62022046 Chenopodium quinoa HOM05D005447 ORTHO05D006730 1.6e-20 104.4 182 37.9
TPR.G36227 Trifolium pratense HOM05D005447 ORTHO05D006730 7.9e-20 102.1 92 54.3
SHI18783 Sapria himalayana HOM05D005447 ORTHO05D006730 1.3e-17 94.7 75 58.7
Cre13.g604850 Chlamydomonas reinhardtii HOM05D005447 ORTHO05D006730 2.5e-13 80.5 233 29.2
Gorai.010G105200 Gossypium raimondii HOM05D005447 ORTHO05D006730 2.0e-10 70.9 76 50.0
Gohir.D06G091250 Gossypium hirsutum HOM05D005447 ORTHO05D006730 1.3e-09 68.2 76 48.7
Gohir.D06G091325 Gossypium hirsutum HOM05D005447 ORTHO05D006730 1.3e-09 68.2 76 48.7


User provided reference genes

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