Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0040002 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 2.9e-45 184.9 93 100.0
CSS0012235 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 6.3e-45 183.7 93 98.9
Actinidia19038 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.6e-27 125.9 87 72.4
Actinidia35002 Actinidia chinensis HOM05D007106 ORTHO05D007770 2.7e-27 125.2 87 71.3
Actinidia37624 Actinidia chinensis HOM05D007106 ORTHO05D007770 3.4e-22 108.2 84 70.2
Rhsim12G0155900 Rhododendron simsii HOM05D007106 ORTHO05D007770 5.8e-22 107.5 96 61.5
vmacro17537 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 1.3e-21 106.3 90 66.7
TAR374G1315 Trochodendron aralioides HOM05D007106 ORTHO05D007770 1.1e-20 103.2 88 64.8
Nitab4.5_0006000g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 5.4e-20 100.9 88 61.4
Dinv38719 Davidia involucrata HOM05D007106 ORTHO05D007770 1.2e-19 99.8 95 64.2
Hma1.2p1_1936F.1_g308220 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 3.5e-19 98.2 85 65.9
Hma1.2p1_2516F.1_g323695 Hydrangea macrophylla HOM05D007106 ORTHO05D007770 3.5e-19 98.2 85 65.9
COL.COLO4_08636 Corchorus olitorius HOM05D007106 ORTHO05D007770 1.3e-18 96.3 93 59.1
Actinidia04893 Actinidia chinensis HOM05D007106 ORTHO05D007770 1.1e-17 93.2 85 64.7
Duzib205G0867 Durio zibethinus HOM05D007106 ORTHO05D007770 1.9e-17 92.4 94 57.4
Nn3g17263 Nelumbo nucifera HOM05D007106 ORTHO05D007770 3.3e-17 91.7 85 62.4
Oeu047292.1 Olea europaea HOM05D007106 ORTHO05D007770 3.3e-17 91.7 96 53.1
Dinv16657 Davidia involucrata HOM05D007106 ORTHO05D007770 4.3e-17 91.3 83 61.4
Thecc.03G089800 Theobroma cacao HOM05D007106 ORTHO05D007770 4.3e-17 91.3 91 57.1
Peaxi162Scf00274g00521 Petunia axillaris HOM05D007106 ORTHO05D007770 7.3e-17 90.5 92 53.3
Gohir.D03G093700 Gossypium hirsutum HOM05D007106 ORTHO05D007770 1.6e-16 89.4 83 59.0
Gorai.003G097700 Gossypium raimondii HOM05D007106 ORTHO05D007770 1.6e-16 89.4 83 59.0
Nitab4.5_0001128g0100 Nicotiana tabacum HOM05D007106 ORTHO05D007770 2.1e-16 89.0 90 55.6
Gohir.A03G067200 Gossypium hirsutum HOM05D007106 ORTHO05D007770 3.6e-16 88.2 83 59.0
Cfa018934 Carpinus fangiana HOM05D007106 ORTHO05D007770 1.4e-15 86.3 95 53.7
vmacro16544 Vaccinium macrocarpon HOM05D007106 ORTHO05D007770 1.4e-15 86.3 87 60.9
CiPaw.11G045300 Carya illinoinensis HOM05D007106 ORTHO05D007770 2.4e-15 85.5 94 53.2
Manes.14G078900 Manihot esculenta HOM05D007106 ORTHO05D007770 3.1e-15 85.1 90 53.3
Peaxi162Scf01256g00221 Petunia axillaris HOM05D007106 ORTHO05D007770 5.2e-15 84.3 78 55.1
MD14G1201500 Malus domestica HOM05D007106 ORTHO05D007770 6.8e-15 84.0 93 51.6
TAR622G1352 Trochodendron aralioides HOM05D007106 ORTHO05D007770 8.9e-15 83.6 79 58.2
GSVIVG01007993001 Vitis vinifera HOM05D007106 ORTHO05D007770 8.9e-15 83.6 78 57.7
QL10p017125 Quercus lobata HOM05D007106 ORTHO05D007770 1.2e-14 83.2 83 55.4
CSS0008414 Camellia sinensis var. sinensis HOM05D007106 ORTHO05D007770 1.5e-14 82.8 81 56.8
RcHm_v2.0_Chr7g0181551 Rosa chinensis HOM05D007106 ORTHO05D007770 1.5e-14 82.8 92 55.4
SalBow7G1857 Salvia bowleyana HOM05D007106 ORTHO05D007770 2.6e-14 82.0 92 53.3
Manes.06G091700 Manihot esculenta HOM05D007106 ORTHO05D007770 5.8e-14 80.9 93 55.9
TAR371G0193 Trochodendron aralioides HOM05D007106 ORTHO05D007770 5.8e-14 80.9 83 55.4
Prupe.5G194500 Prunus persica HOM05D007106 ORTHO05D007770 9.9e-14 80.1 91 52.7
Cpa.g.sc423.1 Carica papaya HOM05D007106 ORTHO05D007770 1.3e-13 79.7 95 50.5
Eucgr.K02478 Eucalyptus grandis HOM05D007106 ORTHO05D007770 3.8e-13 78.2 92 52.2
Gohir.D07G070600 Gossypium hirsutum HOM05D007106 ORTHO05D007770 6.4e-13 77.4 93 49.5
Gorai.001G074500 Gossypium raimondii HOM05D007106 ORTHO05D007770 6.4e-13 77.4 93 49.5
Nitab4.5_0000121g0170 Nicotiana tabacum HOM05D007106 ORTHO05D007770 6.4e-13 77.4 80 52.5
Atru.chr9.252 Acer truncatum HOM05D007106 ORTHO05D007770 1.4e-12 76.3 93 51.6
PGR083G1166 Punica granatum HOM05D007106 ORTHO05D007770 1.4e-12 76.3 93 49.5
Hund02644 Selenicereus undatus HOM05D007106 ORTHO05D007770 1.9e-12 75.9 93 51.6
TWI15G1028 Tripterygium wilfordii HOM05D007106 ORTHO05D007770 1.9e-12 75.9 100 51.0
FAN08G1525 Fragaria x ananassa HOM05D007106 ORTHO05D007770 3.2e-12 75.1 92 52.2
MD06G1194400 Malus domestica HOM05D007106 ORTHO05D007770 3.2e-12 75.1 83 51.8
CiPaw.12G013000 Carya illinoinensis HOM05D007106 ORTHO05D007770 4.2e-12 74.7 91 48.4
Cc04_g16540 Coffea canephora HOM05D007106 ORTHO05D007770 5.4e-12 74.3 84 54.8
FvH4_5g14840 Fragaria vesca HOM05D007106 ORTHO05D007770 5.4e-12 74.3 91 51.6
FAN18G2192 Fragaria x ananassa HOM05D007106 ORTHO05D007770 5.4e-12 74.3 91 51.6
Gohir.A07G066100 Gossypium hirsutum HOM05D007106 ORTHO05D007770 5.4e-12 74.3 93 48.4
PGSC0003DMG400019989 Solanum tuberosum HOM05D007106 ORTHO05D007770 5.4e-12 74.3 78 55.1
Solyc03g115950.3 Solanum lycopersicum HOM05D007106 ORTHO05D007770 1.2e-11 73.2 100 47.0
Lj4g0015417 Lotus japonicus HOM05D007106 ORTHO05D007770 1.6e-11 72.8 83 50.6
Haze_12000 Corylus avellana HOM05D007106 ORTHO05D007770 3.5e-11 71.6 81 49.4
Ciclev10022899m.g Citrus clementina HOM05D007106 ORTHO05D007770 4.6e-11 71.2 90 46.7
MELO3C001986.2 Cucumis melo HOM05D007106 ORTHO05D007770 4.6e-11 71.2 89 50.6
CANSAT80G2807 Cannabis sativa HOM05D007106 ORTHO05D007770 6.0e-11 70.9 95 48.4
ClCG04G012220 Citrullus lanatus HOM05D007106 ORTHO05D007770 6.0e-11 70.9 89 52.8
Psat4g050160 Pisum sativum HOM05D007106 ORTHO05D007770 6.0e-11 70.9 84 52.4
Sopen06g004820 Solanum pennellii HOM05D007106 ORTHO05D007770 7.8e-11 70.5 78 53.8
THA.LOC104821419 Tarenaya hassleriana HOM05D012999 ORTHO05D007770 7.8e-11 70.5 95 44.2
Nitab4.5_0008269g0020 Nicotiana tabacum HOM05D007106 ORTHO05D007770 1.0e-10 70.1 83 50.6
Oeu022764.1 Olea europaea HOM05D007106 ORTHO05D007770 1.0e-10 70.1 87 51.7
CsaV3_1G005530 Cucumis sativus L. HOM05D007106 ORTHO05D007770 2.3e-10 68.9 89 50.6
Sed0002642 Sechium edule HOM05D007106 ORTHO05D007770 3.0e-10 68.6 90 50.0
Aqoxy3G03422 Aquilegia oxysepala HOM05D007106 ORTHO05D007770 6.6e-10 67.4 90 50.0
Sopen12g025630 Solanum pennellii HOM05D007106 ORTHO05D007770 6.6e-10 67.4 80 53.8
PGSC0003DMG400019509 Solanum tuberosum HOM05D007106 ORTHO05D007770 6.6e-10 67.4 98 43.9
THA.LOC104812541 Tarenaya hassleriana HOM05D007106 ORTHO05D007770 6.6e-10 67.4 35 80.0
Glyma.05G026000 Glycine max HOM05D007106 ORTHO05D007770 8.7e-10 67.0 80 51.2
Glyma.17G100900 Glycine max HOM05D007106 ORTHO05D007770 8.7e-10 67.0 80 50.0
Potri.015G062300 Populus trichocarpa HOM05D007106 ORTHO05D007770 8.7e-10 67.0 93 47.3
Solyc07g150120.1 Solanum lycopersicum HOM05D007106 ORTHO05D007770 8.7e-10 67.0 80 52.5
TPR.G9262 Trifolium pratense HOM05D007106 ORTHO05D007770 4.3e-09 64.7 83 49.4
Ah.11g048350 Amaranthus hybridus HOM05D007106 ORTHO05D007770 1.3e-08 63.2 93 44.1
QL03p068707 Quercus lobata HOM05D007106 ORTHO05D007770 1.6e-08 62.8 79 45.6
Sed0016719 Sechium edule HOM05D007106 ORTHO05D007770 2.1e-08 62.4 92 46.7
Cc11_g12880 Coffea canephora HOM05D007106 ORTHO05D007770 2.8e-08 62.0 76 46.1
HanXRQChr05g0155941 Helianthus annuus HOM05D007106 ORTHO05D007770 2.8e-08 62.0 81 48.1
Lalb_Chr23g0273781 Lupinus albus HOM05D007106 ORTHO05D007770 2.8e-08 62.0 85 44.7
Phvul.009G186700 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 2.8e-08 62.0 88 44.3
Migut.I00186 Erythranthe guttata HOM05D007106 ORTHO05D007770 4.8e-08 61.2 64 51.6
EL10Ac5g11028 Beta vulgaris HOM05D007106 ORTHO05D007770 6.2e-08 60.8 95 44.2
Phvul.003G189400 Phaseolus vulgaris HOM05D007106 ORTHO05D007770 8.1e-08 60.5 82 47.6
Psat5g199960 Pisum sativum HOM05D007106 ORTHO05D007770 8.1e-08 60.5 87 44.8
Lsat_1_v5_gn_5_19801 Lactuca sativa HOM05D007106 ORTHO05D007770 5.3e-07 57.8 77 50.6
Nn4g23194 Nelumbo nucifera HOM05D007106 ORTHO05D007770 5.3e-07 57.8 85 48.2
Haze_07318 Corylus avellana HOM05D007106 ORTHO05D007770 6.9e-07 57.4 44 63.6
Glyma.06G194600 Glycine max HOM05D007106 ORTHO05D007770 6.9e-07 57.4 89 42.7
Eucgr.B00514 Eucalyptus grandis HOM05D007106 ORTHO05D007770 2.0e-06 55.8 76 44.7
Sc04g0008030 Simmondsia chinensis HOM05D024185 ORTHO05D023810 2.6e-06 55.5 81 42.0
Lj1g0012300 Lotus japonicus HOM05D007106 ORTHO05D007770 3.4e-06 55.1 81 45.7
TPR.G11889 Trifolium pratense HOM05D007106 ORTHO05D007770 3.4e-06 55.1 88 40.9
Medtr3g435530 Medicago truncatula HOM05D007106 ORTHO05D007770 4.4e-06 54.7 90 41.1
Carub.0005s1360 Capsella rubella HOM05D012999 ORTHO05D007770 5.8e-06 54.3 90 42.2
Glyma.04G168400 Glycine max HOM05D007106 ORTHO05D007770 5.8e-06 54.3 81 40.7
ATR0564G057 Amborella trichopoda HOM05D007106 ORTHO05D007770 7.6e-06 53.9 80 47.5
arahy.Tifrunner.gnm1.ann1.Y9A4XN Arachis hypogaea HOM05D007106 ORTHO05D007770 7.6e-06 53.9 77 44.2
TPR.G32543 Trifolium pratense HOM05D007691 ORTHO05D008758 7.6e-06 53.9 90 42.2
Psat1g089160 Pisum sativum HOM05D007691 ORTHO05D008758 9.9e-06 53.5 93 38.7


User provided reference genes

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