Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.5e-118 429.5 211 100.0
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.7e-109 398.3 212 93.4
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.7e-104 381.3 211 89.1
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.0e-102 375.9 212 88.2
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.0e-99 365.9 212 86.8
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.4e-63 246.1 213 61.0
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 1.6e-59 233.4 206 53.9
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 2.1e-59 233.0 214 58.4
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 3.0e-58 229.2 177 63.8
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 1.6e-56 223.4 206 53.4
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 1.6e-56 223.4 206 53.4
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 3.7e-56 222.2 206 52.9
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 3.7e-56 222.2 206 52.9
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 4.8e-56 221.9 200 55.0
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 1.1e-55 220.7 206 52.4
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 4.0e-55 218.8 214 52.8
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 5.3e-55 218.4 214 53.3
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 1.0e-53 214.2 216 55.1
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 1.0e-53 214.2 215 51.2
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 1.7e-53 213.4 212 52.8
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 3.8e-53 212.2 213 53.5
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 3.8e-53 212.2 212 52.8
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 1.4e-52 210.3 212 54.7
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 1.4e-52 210.3 211 52.1
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 1.9e-52 209.9 212 52.8
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 1.0e-50 204.1 208 54.8
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 2.3e-50 203.0 212 50.0
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 2.3e-50 203.0 212 50.5
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 6.7e-50 201.4 208 51.9
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 8.7e-50 201.1 215 49.8
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 2.8e-48 196.1 213 48.4
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 2.8e-48 196.1 217 49.3
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 3.7e-48 195.7 220 50.0
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 1.4e-47 193.7 209 51.2
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 1.8e-47 193.4 212 49.5
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 5.3e-47 191.8 218 49.1
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 5.3e-47 191.8 215 48.8
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 9.0e-47 191.0 220 47.3
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.2e-46 190.7 218 49.5
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.0e-46 189.9 217 50.2
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 2.6e-46 189.5 217 48.8
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.6e-46 189.5 215 49.3
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 2.6e-46 189.5 217 47.9
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 3.4e-46 189.1 207 48.3
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.0e-45 187.6 217 50.7
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 2.2e-45 186.4 209 47.4
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 2.9e-45 186.0 215 48.4
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.9e-45 186.0 215 48.4
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 3.8e-45 185.7 209 48.3
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 5.0e-45 185.3 211 48.3
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 4.2e-44 182.2 218 45.0
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 5.5e-44 181.8 197 48.2
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.6e-43 180.3 218 45.0
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 2.7e-43 179.5 221 46.2
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 4.6e-43 178.7 207 46.9
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 2.3e-42 176.4 209 47.4
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 5.1e-42 175.3 214 48.1
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 6.7e-42 174.9 205 45.9
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 1.1e-41 174.1 211 44.1
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 3.3e-41 172.6 235 45.1
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 3.3e-41 172.6 235 45.1
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.3e-41 172.2 202 47.0
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 7.4e-41 171.4 215 46.5
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.3e-40 170.6 220 45.9
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.3e-40 170.6 220 45.9
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.8e-40 169.5 202 46.5
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.8e-40 169.5 202 46.5
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 3.7e-40 169.1 214 44.4
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 6.3e-40 168.3 167 56.3
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 8.2e-40 167.9 209 46.9
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 1.4e-39 167.2 184 52.7
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 3.1e-39 166.0 232 44.8
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 3.1e-39 166.0 202 44.6
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 3.1e-39 166.0 155 56.1
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 6.9e-39 164.9 212 45.8
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 9.0e-39 164.5 206 48.5
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 1.2e-38 164.1 203 44.8
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 3.4e-38 162.5 213 43.2
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 3.8e-37 159.1 211 44.1
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 3.8e-37 159.1 176 48.3
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 5.0e-37 158.7 208 39.9
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 8.5e-37 157.9 209 41.1
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 8.5e-37 157.9 209 41.1
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 5.5e-36 155.2 174 48.9
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 5.5e-36 155.2 199 42.7
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 1.2e-35 154.1 214 37.9
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 1.2e-35 154.1 212 42.9
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 2.1e-35 153.3 208 42.8
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 2.7e-35 152.9 209 40.7
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 4.6e-35 152.1 209 40.2
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 1.0e-34 151.0 209 41.6
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 3.0e-34 149.4 156 48.7
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 3.0e-34 149.4 216 43.5
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 1.5e-33 147.1 223 39.5
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 2.5e-33 146.4 216 40.7
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 2.5e-33 146.4 213 39.4
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 3.3e-33 146.0 208 37.5
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 1.3e-32 144.1 185 43.8
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 2.2e-32 143.3 216 40.3
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.2e-32 143.3 185 45.4
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 3.7e-32 142.5 110 64.5
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 3.7e-32 142.5 218 41.3
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 4.8e-32 142.1 223 40.8
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 1.1e-31 141.0 209 43.5
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.4e-31 140.6 207 38.6
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 1.8e-31 140.2 216 39.8
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 1.8e-31 140.2 216 39.8
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 2.4e-31 139.8 209 37.8
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 2.4e-31 139.8 207 38.6
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 3.1e-31 139.4 216 39.4
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 3.1e-31 139.4 226 38.9
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 5.3e-31 138.7 222 39.2
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 6.9e-31 138.3 215 37.2
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 6.9e-31 138.3 214 36.4
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 1.2e-30 137.5 206 35.4
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 1.2e-30 137.5 206 35.4
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 1.2e-30 137.5 206 35.4
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 1.2e-30 137.5 211 39.3
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.5e-30 137.1 219 39.3
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 2.0e-30 136.7 217 39.6
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 4.5e-30 135.6 206 37.4
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 5.9e-30 135.2 216 38.9
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 5.9e-30 135.2 211 39.3
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 1.0e-29 134.4 206 35.9
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 1.0e-29 134.4 206 36.4
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.0e-29 134.4 202 37.1
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 1.0e-29 134.4 213 38.0
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 1.7e-29 133.7 217 37.8
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 2.2e-29 133.3 212 37.7
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 2.9e-29 132.9 215 35.3
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 3.8e-29 132.5 206 36.9
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 3.8e-29 132.5 208 38.9
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 3.8e-29 132.5 211 37.4
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 5.0e-29 132.1 208 38.5
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 5.0e-29 132.1 211 37.4
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 5.0e-29 132.1 216 38.0
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 8.5e-29 131.3 208 38.5
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.5e-28 129.8 208 38.5
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 7.2e-28 128.3 213 36.6
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 9.4e-28 127.9 105 55.2
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 1.2e-27 127.5 219 38.8
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 2.1e-27 126.7 210 37.1
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 2.1e-27 126.7 214 39.3
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 3.6e-27 125.9 216 36.1
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 3.6e-27 125.9 213 35.7
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 3.6e-27 125.9 209 36.8
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 3.6e-27 125.9 213 38.5
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 4.7e-27 125.6 215 36.3
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 4.7e-27 125.6 212 37.7
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 6.1e-27 125.2 213 36.2
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 7.9e-27 124.8 214 36.4
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 1.0e-26 124.4 210 36.7
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.4e-26 124.0 216 40.7
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 1.4e-26 124.0 214 35.0
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 1.8e-26 123.6 212 36.3
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 3.0e-26 122.9 218 35.8
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 3.9e-26 122.5 219 36.1
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 3.3e-25 119.4 210 37.1
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 5.7e-25 118.6 157 38.2
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 5.7e-25 118.6 179 40.2
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 1.7e-24 117.1 209 34.9
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 2.8e-24 116.3 214 37.4
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.8e-24 115.5 151 45.0
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 6.3e-24 115.2 213 35.7
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 1.1e-23 114.4 222 37.4
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 3.1e-23 112.8 210 34.3
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 1.5e-22 110.5 222 35.6
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.0e-22 110.2 147 43.5
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 4.5e-22 109.0 221 36.2
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 6.5e-21 105.1 154 44.2
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 8.5e-21 104.8 151 41.1
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 5.5e-20 102.1 144 41.0
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 9.4e-20 101.3 151 41.1
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 1.8e-18 97.1 79 57.0
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 1.8e-18 97.1 147 41.5
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 4.4e-17 92.4 141 39.7
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 1.7e-16 90.5 186 32.3
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 2.8e-16 89.7 108 44.4
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 6.3e-16 88.6 144 41.0
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 3.1e-15 86.3 209 31.1
SEGI_20067 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 1.2e-14 84.3 133 38.3
Zm00001eb109720 Zea mays HOM05D003474 ORTHO05D003971 4.5e-14 82.4 216 31.0
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 7.7e-14 81.6 139 38.1
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 1.3e-13 80.9 206 30.6
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 5.0e-13 79.0 88 45.5
SEGI_16345 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 1.1e-12 77.8 200 31.5
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 2.1e-11 73.6 140 37.9
Nitab4.5_0000897g0040 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.0e-09 67.0 108 38.0


User provided reference genes

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