Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039987 Camellia sinensis var. sinensis HOM05D006347 ORTHO05D007835 1.0e-31 139.4 71 100.0
vmacro03233 Vaccinium macrocarpon HOM05D006347 ORTHO05D007835 2.1e-16 88.6 65 73.8
Actinidia24168 Actinidia chinensis HOM05D006347 ORTHO05D007835 2.3e-15 85.1 65 70.8
Rhsim13G0103600 Rhododendron simsii HOM05D006347 ORTHO05D007835 3.1e-15 84.7 65 70.8
GSVIVG01031423001 Vitis vinifera HOM05D006347 ORTHO05D007835 1.5e-14 82.4 65 67.7
Dinv29404 Davidia involucrata HOM05D006347 ORTHO05D007835 2.0e-14 82.0 65 66.2
Lj2A998T24 Lonicera japonica HOM05D006347 ORTHO05D007835 1.7e-13 79.0 65 67.7
Potri.009G151100 Populus trichocarpa HOM05D006347 ORTHO05D007835 1.7e-13 79.0 65 64.6
Cfa021537 Carpinus fangiana HOM05D006347 ORTHO05D007835 1.9e-12 75.5 52 73.1
QL01p014117 Quercus lobata HOM05D006347 ORTHO05D007835 2.4e-12 75.1 52 73.1
Sc12g0003850 Simmondsia chinensis HOM05D006347 ORTHO05D007835 3.2e-12 74.7 65 58.5
TWI31G1233 Tripterygium wilfordii HOM05D006347 ORTHO05D007835 3.2e-12 74.7 65 63.1
Sabra09G0119700 Salix brachista HOM05D006347 ORTHO05D007835 4.1e-12 74.3 65 60.0
C02p11300 Brassica napus HOM05D006347 ORTHO05D007835 5.4e-12 73.9 65 64.6
BraA02t05690Z Brassica rapa HOM05D006347 ORTHO05D007835 5.4e-12 73.9 65 64.6
TAR633G1474 Trochodendron aralioides HOM05D006347 ORTHO05D007835 5.4e-12 73.9 65 60.0
AT5G22820 Arabidopsis thaliana HOM05D006347 ORTHO05D007835 1.2e-11 72.8 65 60.0
BcaC03g13920 Brassica carinata HOM05D006347 ORTHO05D007835 1.6e-11 72.4 65 63.1
CARHR190750 Cardamine hirsuta HOM05D006347 ORTHO05D007835 2.1e-11 72.0 65 58.5
Haze_23489 Corylus avellana HOM05D006347 ORTHO05D007835 2.1e-11 72.0 52 71.2
DCAR_015490 Daucus carota HOM05D006347 ORTHO05D007835 2.1e-11 72.0 65 58.5
Hma1.2p1_0884F.1_g232440 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 2.1e-11 72.0 65 61.5
Hma1.2p1_0884F.1_g232450 Hydrangea macrophylla HOM05D006347 ORTHO05D007835 2.1e-11 72.0 65 61.5
Carub.0006s2054 Capsella rubella HOM05D006347 ORTHO05D007835 2.7e-11 71.6 65 58.5
Thhalv10013199m.g Eutrema salsugineum HOM05D006347 ORTHO05D007835 3.5e-11 71.2 65 58.5
Aa31LG1G12890 Aethionema arabicum HOM05D006347 ORTHO05D007835 4.6e-11 70.9 65 56.9
CiPaw.14G105000 Carya illinoinensis HOM05D006347 ORTHO05D007835 4.6e-11 70.9 52 69.2
arahy.Tifrunner.gnm1.ann1.9T0HEQ Arachis hypogaea HOM05D006347 ORTHO05D007835 6.0e-11 70.5 52 67.3
BNapus_Darmor_BZH_scaffold_38p00360 Brassica napus HOM05D006347 ORTHO05D007835 6.0e-11 70.5 65 61.5
AUR62031770 Chenopodium quinoa HOM05D006347 ORTHO05D007835 6.0e-11 70.5 65 55.4
Lj3g0008152 Lotus japonicus HOM05D006347 ORTHO05D007835 6.0e-11 70.5 52 69.2
BcaB05g22687 Brassica carinata HOM05D006347 ORTHO05D007835 7.8e-11 70.1 65 60.0
Cc01_g10020 Coffea canephora HOM05D006347 ORTHO05D007835 7.8e-11 70.1 65 60.0
SalBow6G0094 Salvia bowleyana HOM05D006347 ORTHO05D007835 7.8e-11 70.1 65 60.0
Atru.chr3.3422 Acer truncatum HOM05D006347 ORTHO05D007835 1.3e-10 69.3 52 67.3
arahy.Tifrunner.gnm1.ann1.PRK8FW Arachis hypogaea HOM05D006347 ORTHO05D007835 1.3e-10 69.3 52 65.4
Ca_01691_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 1.7e-10 68.9 52 67.3
Ca_30937_v3 Cicer arietinum L. HOM05D006347 ORTHO05D007835 1.7e-10 68.9 52 67.3
Ciclev10028160m.g Citrus clementina HOM05D006347 ORTHO05D007835 2.3e-10 68.6 65 58.5
Migut.D02321 Erythranthe guttata HOM05D006347 ORTHO05D007835 3.0e-10 68.2 65 56.9
Gohir.D07G110400 Gossypium hirsutum HOM05D006347 ORTHO05D007835 3.0e-10 68.2 65 56.9
Gorai.001G118600 Gossypium raimondii HOM05D006347 ORTHO05D007835 3.0e-10 68.2 65 56.9
Sp6g22600 Schrenkiella parvula HOM05D006347 ORTHO05D007835 3.0e-10 68.2 65 56.9
AL6G33930 Arabidopsis lyrata HOM05D006347 ORTHO05D007835 3.9e-10 67.8 65 55.4
Aqoxy1G01013 Aquilegia oxysepala HOM05D006347 ORTHO05D007835 5.1e-10 67.4 65 56.9
Gohir.A07G106500 Gossypium hirsutum HOM05D006347 ORTHO05D007835 5.1e-10 67.4 65 55.4
Manes.04G010900 Manihot esculenta HOM05D006347 ORTHO05D007835 5.1e-10 67.4 65 60.0
Thecc.09G294500 Theobroma cacao HOM05D006347 ORTHO05D007835 6.6e-10 67.0 65 56.9
Prupe.6G116300 Prunus persica HOM05D006347 ORTHO05D007835 8.6e-10 66.6 65 58.5
BolC2t07198H Brassica oleracea HOM05D006347 ORTHO05D007835 1.1e-09 66.2 68 57.4
TPR.G32394 Trifolium pratense HOM05D006347 ORTHO05D007835 1.1e-09 66.2 52 63.5
Psat5g253920 Pisum sativum HOM05D006347 ORTHO05D007835 1.5e-09 65.9 49 67.3
VMungo1080G1358 Vigna mungo HOM05D006347 ORTHO05D007835 1.5e-09 65.9 65 52.3
FvH4_3g29990 Fragaria vesca HOM05D006347 ORTHO05D007835 1.9e-09 65.5 65 58.5
Lsat_1_v5_gn_2_96801 Lactuca sativa HOM05D006347 ORTHO05D007835 1.9e-09 65.5 66 57.6
COL.COLO4_19257 Corchorus olitorius HOM05D006347 ORTHO05D007835 2.5e-09 65.1 65 55.4
Haze_23492 Corylus avellana HOM05D006347 ORTHO05D007835 2.5e-09 65.1 46 71.7
FAN21G3835 Fragaria x ananassa HOM05D006347 ORTHO05D007835 2.5e-09 65.1 65 58.5
Glyma.13G320700 Glycine max HOM05D006347 ORTHO05D007835 2.5e-09 65.1 50 64.0
Duzib168G1158 Durio zibethinus HOM05D006347 ORTHO05D007835 3.3e-09 64.7 65 53.8
HanXRQChr07g0197561 Helianthus annuus HOM05D006347 ORTHO05D007835 4.3e-09 64.3 66 56.1
RcHm_v2.0_Chr5g0055941 Rosa chinensis HOM05D006347 ORTHO05D007835 4.3e-09 64.3 52 67.3
EL10Ac9g21046 Beta vulgaris HOM05D006347 ORTHO05D007835 5.6e-09 63.9 65 50.8
Medtr2g084580 Medicago truncatula HOM05D006347 ORTHO05D007835 5.6e-09 63.9 53 64.2
SGA_v2.0_scaffold27G11587 Striga asiatica HOM05D006347 ORTHO05D007835 5.6e-09 63.9 50 66.0
AUR62023970 Chenopodium quinoa HOM05D006347 ORTHO05D007835 7.3e-09 63.5 61 55.7
ECA238G1908 Erigeron canadensis HOM05D006347 ORTHO05D007835 1.2e-08 62.8 66 53.0
FAN25G1668 Fragaria x ananassa HOM05D006347 ORTHO05D007835 1.6e-08 62.4 52 67.3
Lalb_Chr22g0350521 Lupinus albus HOM05D006347 ORTHO05D007835 1.6e-08 62.4 52 59.6
FAN11G3746 Fragaria x ananassa HOM05D006347 ORTHO05D007835 2.1e-08 62.0 65 55.4
Nn2g13927 Nelumbo nucifera HOM05D006347 ORTHO05D007835 2.1e-08 62.0 65 50.8
Phvul.005G128700 Phaseolus vulgaris HOM05D006347 ORTHO05D007835 3.6e-08 61.2 65 49.2
ClCG02G021770 Citrullus lanatus HOM05D006347 ORTHO05D007835 4.7e-08 60.8 65 53.8
MELO3C021469.2 Cucumis melo HOM05D006347 ORTHO05D007835 4.7e-08 60.8 65 53.8
Glyma.12G180067 Glycine max HOM05D006347 ORTHO05D007835 6.2e-08 60.5 64 51.6
Nitab4.5_0003470g0080 Nicotiana tabacum HOM05D006347 ORTHO05D007835 1.1e-07 59.7 52 57.7
Peaxi162Scf00755g00310 Petunia axillaris HOM05D006347 ORTHO05D007835 1.1e-07 59.7 52 55.8
MSTRG.18715 Avicennia marina HOM05D006347 ORTHO05D007835 1.4e-07 59.3 65 50.8
Nitab4.5_0005038g0010 Nicotiana tabacum HOM05D006347 ORTHO05D007835 2.4e-07 58.5 52 55.8
CsaV3_6G014560 Cucumis sativus L. HOM05D006347 ORTHO05D007835 3.1e-07 58.2 65 50.8
CAN.G1432.26 Capsicum annuum HOM05D006347 ORTHO05D007835 4.0e-07 57.8 52 59.6
MD11G1153600 Malus domestica HOM05D006347 ORTHO05D007835 4.0e-07 57.8 52 63.5
Solyc06g074690.3 Solanum lycopersicum HOM05D006347 ORTHO05D007835 4.0e-07 57.8 53 60.4
PSO063G2566 Papaver somniferum HOM05D006347 ORTHO05D007835 5.2e-07 57.4 65 46.2
PGR119G2351 Punica granatum HOM05D006347 ORTHO05D007835 5.2e-07 57.4 65 50.8
THA.LOC104810888 Tarenaya hassleriana HOM05D006347 ORTHO05D007835 5.2e-07 57.4 65 53.8
Peaxi162Scf00157g00213 Petunia axillaris HOM05D006347 ORTHO05D007835 1.2e-06 56.2 52 55.8
Eucgr.J00411 Eucalyptus grandis HOM05D006347 ORTHO05D007835 1.5e-06 55.8 65 50.8
Sed0011208 Sechium edule HOM05D006347 ORTHO05D007835 1.5e-06 55.8 65 50.8
PSO339G5358 Papaver somniferum HOM05D006347 ORTHO05D007835 2.0e-06 55.5 64 46.9
Sopen06g031100 Solanum pennellii HOM05D006347 ORTHO05D007835 2.0e-06 55.5 53 58.5
Ah.01g016170 Amaranthus hybridus HOM05D006347 ORTHO05D007835 3.4e-06 54.7 65 44.6
PGSC0003DMG400007153 Solanum tuberosum HOM05D006347 ORTHO05D007835 5.8e-06 53.9 53 58.5
CANSAT56G1452 Cannabis sativa HOM05D006347 ORTHO05D007835 7.6e-06 53.5 52 55.8


User provided reference genes

Program Settings