Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 5.7e-242 840.5 424 100.0
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 1.2e-194 683.3 424 80.7
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 3.6e-188 661.8 424 77.8
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 1.1e-187 660.2 425 78.1
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 1.9e-157 559.7 373 74.5
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 3.7e-156 555.4 427 66.3
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 1.0e-153 547.4 424 65.3
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 2.2e-153 546.2 424 64.4
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 2.7e-151 539.3 421 63.7
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 3.5e-151 538.9 429 64.3
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 8.7e-150 534.3 427 63.5
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 1.3e-148 530.4 430 63.5
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 8.2e-148 527.7 426 62.9
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 5.3e-147 525.0 425 62.6
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 7.6e-146 521.2 424 60.8
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.0e-145 520.8 424 63.2
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 3.8e-145 518.8 424 63.2
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 5.5e-144 515.0 390 66.9
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 8.8e-142 507.7 424 59.9
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 2.6e-138 496.1 424 58.5
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 8.5e-137 491.1 427 59.7
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 1.9e-136 490.0 427 58.8
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.1e-135 486.5 419 60.6
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 3.6e-135 485.7 419 61.3
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.7e-135 485.3 425 61.2
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 7.9e-135 484.6 425 60.2
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.8e-134 483.4 427 58.3
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 3.0e-134 482.6 427 58.5
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 3.3e-133 479.2 428 55.6
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 4.4e-133 478.8 429 56.6
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 1.8e-131 473.4 424 58.7
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 5.3e-131 471.9 427 57.1
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 7.0e-131 471.5 363 65.8
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 7.0e-131 471.5 447 55.9
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 9.1e-131 471.1 424 58.5
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 2.0e-130 469.9 372 63.2
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 1.1e-128 464.2 425 56.2
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 7.2e-128 461.5 436 57.3
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 3.6e-127 459.1 428 55.8
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 3.6e-127 459.1 424 58.0
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 3.6e-127 459.1 427 53.9
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 4.7e-127 458.8 427 55.3
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 1.0e-126 457.6 428 55.4
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 3.9e-126 455.7 428 55.1
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 2.0e-125 453.4 429 54.5
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 5.7e-125 451.8 420 57.9
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 3.7e-124 449.1 427 55.7
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 3.7e-124 449.1 429 54.8
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 4.8e-124 448.7 425 55.5
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 5.3e-123 445.3 421 54.4
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 7.0e-123 444.9 425 54.4
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 1.0e-121 441.0 468 51.7
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 1.7e-121 440.3 425 53.9
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.7e-121 440.3 422 53.3
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 2.2e-121 439.9 439 55.4
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 3.8e-121 439.1 429 54.1
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 1.5e-120 437.2 391 57.8
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 4.2e-120 435.6 428 54.0
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.2e-120 435.6 422 53.3
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 2.1e-119 433.3 375 55.5
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 2.7e-119 433.0 427 52.9
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 1.8e-118 430.3 440 54.5
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 2.3e-118 429.9 426 53.1
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 5.2e-118 428.7 427 53.9
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 6.7e-118 428.3 401 54.9
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 8.8e-118 427.9 429 52.4
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.5e-117 427.2 421 53.2
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 3.3e-117 426.0 428 52.3
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 5.7e-117 425.2 429 52.7
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 1.3e-116 424.1 425 52.2
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 2.2e-116 423.3 427 50.8
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 1.4e-115 420.6 427 52.7
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 1.8e-115 420.2 429 55.2
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 4.1e-115 419.1 428 51.9
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 4.1e-115 419.1 428 51.9
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 9.1e-115 417.9 430 51.9
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.6e-114 417.2 427 53.9
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 2.7e-114 416.4 430 51.6
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 3.5e-114 416.0 427 50.4
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 7.7e-114 414.8 427 52.5
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 8.5e-113 411.4 408 52.2
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.1e-112 411.0 427 52.9
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.1e-111 406.8 428 50.5
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 3.6e-111 406.0 424 51.7
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 1.4e-110 404.1 427 50.8
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 1.8e-110 403.7 432 50.2
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 1.8e-110 403.7 463 48.8
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.3e-110 403.3 400 55.0
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 4.0e-110 402.5 427 49.9
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 4.0e-110 402.5 432 51.2
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 4.0e-110 402.5 466 48.9
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 9.8e-109 397.9 425 51.5
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 8.3e-108 394.8 387 53.7
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 8.3e-108 394.8 424 51.4
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 7.7e-106 388.3 428 49.5
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 1.3e-105 387.5 393 51.1
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.0e-105 385.6 432 51.4
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 7.2e-104 381.7 419 47.7
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 3.0e-102 376.3 427 49.9
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 5.2e-102 375.6 425 47.3
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 5.9e-98 362.1 372 51.1
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 2.5e-96 356.7 425 48.7
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 3.3e-96 356.3 407 48.9
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 6.1e-95 352.1 331 54.7
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 2.7e-90 336.7 366 50.5
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 1.0e-89 334.7 419 44.6
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 4.9e-84 315.8 402 45.3
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 5.4e-83 312.4 427 40.7
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.0e-81 308.1 427 39.8
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 1.5e-77 294.3 340 51.2
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 3.3e-72 276.6 373 39.4
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.5e-69 267.7 213 65.3
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 2.0e-69 267.3 354 40.4
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.9e-64 250.8 424 35.8
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.5e-61 241.1 208 58.2
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 9.9e-61 238.4 255 51.4
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 8.7e-57 225.3 392 37.2
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 2.4e-54 217.2 340 40.0
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 6.4e-52 209.1 189 52.4
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 1.1e-51 208.4 429 33.8
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.2e-50 204.9 175 62.3
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 3.5e-50 203.4 433 32.1
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 2.0e-45 187.6 445 30.8
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 9.9e-45 185.3 449 33.0
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 2.2e-44 184.1 427 31.9
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 1.8e-41 174.5 435 30.3
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 1.8e-41 174.5 145 59.3
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 3.7e-39 166.8 487 28.1
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 1.2e-37 161.8 402 30.3
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 3.0e-33 147.1 438 30.1
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.2e-31 141.0 213 39.9
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.1e-26 124.4 241 34.9
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 3.6e-26 123.6 463 27.0
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 2.6e-16 90.9 85 51.8
FAN11G0106 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.4e-16 90.1 240 30.0
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 4.4e-16 90.1 76 53.9
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 1.3e-15 88.6 71 54.9
BcaB08g37392 Brassica carinata HOM05D000013 ORTHO05D000011 2.9e-12 77.4 96 45.8
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 4.7e-10 70.1 79 51.9
TPR.G890 Trifolium pratense HOM05D005393 ORTHO05D006257 1.4e-09 68.6 62 50.0
FvH4_3g40670 Fragaria vesca HOM05D005393 ORTHO05D006257 1.8e-09 68.2 55 56.4
MD15G1008600 Malus domestica HOM05D005393 ORTHO05D006257 1.4e-06 58.5 66 50.0


User provided reference genes

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