Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039971 Camellia sinensis var. sinensis HOM05D008370 ORTHO05D009732 2.9e-35 151.4 76 100.0
Dinv05773 Davidia involucrata HOM05D008370 ORTHO05D009732 1.5e-12 75.9 76 57.9
Lj4g0015780 Lotus japonicus HOM05D008370 ORTHO05D009732 2.0e-12 75.5 78 60.3
Potri.007G077300 Populus trichocarpa HOM05D008370 ORTHO05D009732 8.4e-11 70.1 77 51.9
Lj1g0003311 Lotus japonicus HOM05D008370 ORTHO05D009732 1.9e-10 68.9 82 52.4
Actinidia01380 Actinidia chinensis HOM05D008370 ORTHO05D009732 3.2e-10 68.2 81 55.6
Potri.005G087000 Populus trichocarpa HOM05D008370 ORTHO05D009732 9.2e-10 66.6 77 50.6
QL06p031379 Quercus lobata HOM05D008370 ORTHO05D009732 1.6e-09 65.9 70 50.0
Cfa002787 Carpinus fangiana HOM05D008370 ORTHO05D009732 2.7e-09 65.1 77 50.6
Glyma.04G217800 Glycine max HOM05D008370 ORTHO05D009732 3.5e-09 64.7 81 53.1
TPR.G2226 Trifolium pratense HOM05D008370 ORTHO05D009732 3.5e-09 64.7 83 51.8
FAN23G2492 Fragaria x ananassa HOM05D024037 ORTHO05D009732 1.7e-08 62.4 80 46.2
Sabra07G0065300 Salix brachista HOM05D008370 ORTHO05D009732 1.7e-08 62.4 77 50.6
Actinidia12221 Actinidia chinensis HOM05D008370 ORTHO05D009732 2.3e-08 62.0 80 52.5
FAN19G1178 Fragaria x ananassa HOM05D024037 ORTHO05D009732 3.0e-08 61.6 80 45.0
MD01G1015700 Malus domestica HOM05D008370 ORTHO05D009732 3.0e-08 61.6 80 52.5
Sabra05G0071700 Salix brachista HOM05D008370 ORTHO05D009732 3.0e-08 61.6 77 48.1
MD15G1335300 Malus domestica HOM05D015647 ORTHO05D009732 3.9e-08 61.2 91 46.2
Phvul.009G138200 Phaseolus vulgaris HOM05D008370 ORTHO05D009732 3.9e-08 61.2 81 50.6
Rhsim08G0004800 Rhododendron simsii HOM05D008370 ORTHO05D009732 3.9e-08 61.2 83 54.2
CiPaw.04G088900 Carya illinoinensis HOM05D008370 ORTHO05D009732 5.1e-08 60.8 75 56.0
FvH4_1g23211 Fragaria vesca HOM05D024037 ORTHO05D009732 5.1e-08 60.8 80 45.0
Glyma.06G148100 Glycine max HOM05D008370 ORTHO05D009732 5.1e-08 60.8 84 51.2
Psat7g050080 Pisum sativum HOM05D008370 ORTHO05D009732 5.1e-08 60.8 80 50.0
Cfa002786 Carpinus fangiana HOM05D008370 ORTHO05D009732 6.6e-08 60.5 72 52.8
CiPaw.04G088800 Carya illinoinensis HOM05D008370 ORTHO05D009732 6.6e-08 60.5 76 47.4
Haze_25084 Corylus avellana HOM05D008370 ORTHO05D009732 6.6e-08 60.5 72 52.8
TAR376G0884 Trochodendron aralioides HOM05D008370 ORTHO05D009732 1.5e-07 59.3 82 50.0
COL.COLO4_17423 Corchorus olitorius HOM05D008370 ORTHO05D009732 4.3e-07 57.8 78 46.2
Glyma.08G144800 Glycine max HOM05D008370 ORTHO05D009732 4.3e-07 57.8 74 50.0
Eucgr.I00294 Eucalyptus grandis HOM05D008370 ORTHO05D009732 5.6e-07 57.4 75 50.7
Glyma.05G186300 Glycine max HOM05D008370 ORTHO05D009732 5.6e-07 57.4 78 48.7
Manes.12G145500 Manihot esculenta HOM05D008370 ORTHO05D009732 7.3e-07 57.0 82 46.3
SalBow5G4820 Salvia bowleyana HOM05D008370 ORTHO05D009732 7.3e-07 57.0 76 48.7
Medtr8g092320 Medicago truncatula HOM05D008370 ORTHO05D009732 9.6e-07 56.6 86 45.3
Prupe.6G166000 Prunus persica HOM05D015647 ORTHO05D009732 9.6e-07 56.6 86 50.0
Atru.chr4.716 Acer truncatum HOM05D008370 ORTHO05D009732 1.2e-06 56.2 88 42.0
arahy.Tifrunner.gnm1.ann1.3XNV5U Arachis hypogaea HOM05D008370 ORTHO05D009732 1.2e-06 56.2 82 47.6
COL.COLO4_22370 Corchorus olitorius HOM05D008370 ORTHO05D009732 1.2e-06 56.2 82 48.8
Gohir.D03G047500 Gossypium hirsutum HOM05D008370 ORTHO05D009732 1.2e-06 56.2 80 46.2
Lj4g0014601 Lotus japonicus HOM05D010746 ORTHO05D009732 1.2e-06 56.2 85 44.7
Thecc.07G145600 Theobroma cacao HOM05D008370 ORTHO05D009732 1.2e-06 56.2 72 51.4
Lalb_Chr07g0184691 Lupinus albus HOM05D010746 ORTHO05D009732 1.6e-06 55.8 76 47.4
Thecc.01G117100 Theobroma cacao HOM05D008370 ORTHO05D009732 2.1e-06 55.5 77 45.5
Gohir.A01G042000 Gossypium hirsutum HOM05D008370 ORTHO05D009732 2.8e-06 55.1 79 48.1
TPR.G2215 Trifolium pratense HOM05D010746 ORTHO05D009732 2.8e-06 55.1 75 45.3
CiPaw.03G131600 Carya illinoinensis HOM05D008370 ORTHO05D009732 3.6e-06 54.7 73 52.1
Gorai.003G048600 Gossypium raimondii HOM05D008370 ORTHO05D009732 3.6e-06 54.7 80 46.2
GSVIVG01022266001 Vitis vinifera HOM05D015647 ORTHO05D009732 3.6e-06 54.7 81 49.4
Gorai.002G039200 Gossypium raimondii HOM05D008370 ORTHO05D009732 4.7e-06 54.3 79 48.1
Psat7g050120 Pisum sativum HOM05D010746 ORTHO05D009732 4.7e-06 54.3 81 44.4
Prupe.6G166400 Prunus persica HOM05D008370 ORTHO05D009732 8.1e-06 53.5 78 43.6


User provided reference genes

Program Settings