Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039922 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 3.8e-221 771.2 384 100.0
CSS0011548 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 3.4e-193 678.3 394 88.8
CSS0022523 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 1.9e-143 513.1 270 94.1
Actinidia16803 Actinidia chinensis HOM05D014353 ORTHO05D002944 6.8e-93 345.1 409 50.6
Rhsim13G0191200 Rhododendron simsii HOM05D014353 ORTHO05D002944 7.3e-71 271.9 411 44.3
Actinidia35571 Actinidia chinensis HOM05D014353 ORTHO05D002944 3.2e-66 256.5 291 53.6
Dinv40663 Davidia involucrata HOM05D014353 ORTHO05D002944 4.6e-57 226.1 290 46.6
Dinv04617 Davidia involucrata HOM05D000845 ORTHO05D003813 1.6e-49 201.1 281 43.8
CSS0028772 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 3.0e-40 170.2 399 35.6
TAR629G2655 Trochodendron aralioides HOM05D004563 ORTHO05D002944 3.4e-28 130.2 420 31.2
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 6.7e-24 115.9 442 26.7
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 3.1e-21 107.1 369 29.3
Duzib192G1010 Durio zibethinus HOM05D004563 ORTHO05D017903 5.9e-20 102.8 462 27.7
CSS0006802 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 7.9e-17 92.4 419 23.4
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 1.4e-16 91.7 442 25.6
Thecc.06G172300 Theobroma cacao HOM05D004563 ORTHO05D002944 2.3e-16 90.9 382 24.9
Potri.004G055300 Populus trichocarpa HOM05D023908 ORTHO05D002944 3.9e-16 90.1 386 26.9
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 5.2e-16 89.7 432 25.7
Actinidia10974 Actinidia chinensis HOM05D004563 ORTHO05D002944 8.8e-16 89.0 426 27.5
CSS0011468 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 2.0e-15 87.8 422 23.7
MD17G1232800 Malus domestica HOM05D004563 ORTHO05D002944 2.0e-15 87.8 421 25.4
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 3.3e-15 87.0 437 24.7
CAN.G370.64 Capsicum annuum HOM05D014572 ORTHO05D016880 4.4e-15 86.7 394 28.2
MD10G1281200 Malus domestica HOM05D016724 ORTHO05D017903 4.4e-15 86.7 418 27.8
TAR626G0818 Trochodendron aralioides HOM05D008023 ORTHO05D002944 3.7e-14 83.6 324 29.3
TWI38G0720 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 4.8e-14 83.2 404 26.7
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 6.3e-14 82.8 431 24.1
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 8.2e-14 82.4 429 23.8
Potri.011G065100 Populus trichocarpa HOM05D023908 ORTHO05D002944 1.8e-13 81.3 388 25.8
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 4.1e-13 80.1 197 31.5
TWI59G1400 Tripterygium wilfordii HOM05D004563 ORTHO05D002944 4.1e-13 80.1 436 24.3
Duzib235G1377 Durio zibethinus HOM05D004563 ORTHO05D002944 1.2e-12 78.6 119 37.0
Oeu032703.1 Olea europaea HOM05D004563 ORTHO05D002944 2.0e-12 77.8 429 24.5
QL08p041398 Quercus lobata HOM05D004563 ORTHO05D002944 2.0e-12 77.8 440 24.5
Sabra04G0036000 Salix brachista HOM05D023908 ORTHO05D002944 2.0e-12 77.8 244 28.7
MD09G1239700 Malus domestica HOM05D004563 ORTHO05D002944 4.5e-12 76.6 424 27.1
TWI63G0650 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 4.5e-12 76.6 384 25.3
Thecc.01G148500 Theobroma cacao HOM05D004563 ORTHO05D002944 5.9e-12 76.3 417 23.7
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 7.7e-12 75.9 425 23.1
FAN09G4605 Fragaria x ananassa HOM05D004563 ORTHO05D002944 7.7e-12 75.9 421 24.0
CAN.G318.9 Capsicum annuum HOM05D004563 ORTHO05D002944 1.3e-11 75.1 420 27.4
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 1.3e-11 75.1 237 24.5
GSVIVG01020684001 Vitis vinifera HOM05D004563 ORTHO05D002944 1.3e-11 75.1 456 25.0
FAN09G1171 Fragaria x ananassa HOM05D004563 ORTHO05D002944 3.8e-11 73.6 405 24.7
FAN02G0553 Fragaria x ananassa HOM05D004563 ORTHO05D002944 6.5e-11 72.8 410 24.1
TAR626G0367 Trochodendron aralioides HOM05D004563 ORTHO05D002944 6.5e-11 72.8 85 42.4
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 8.5e-11 72.4 470 22.1
Haze_13348 Corylus avellana HOM05D004563 ORTHO05D002944 1.9e-10 71.2 440 25.0
PGR042G0272 Punica granatum HOM05D004563 ORTHO05D002944 1.9e-10 71.2 415 22.9
Phvul.005G096100 Phaseolus vulgaris HOM05D004563 ORTHO05D002944 2.5e-10 70.9 418 24.9
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 4.2e-10 70.1 496 24.6
Medtr4g079720 Medicago truncatula HOM05D004563 ORTHO05D002944 5.5e-10 69.7 412 23.5
PGSC0003DMG400020429 Solanum tuberosum HOM05D004563 ORTHO05D002944 5.5e-10 69.7 402 25.4
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 7.2e-10 69.3 411 24.1
Cc02_g14720 Coffea canephora HOM05D014572 ORTHO05D016880 9.4e-10 68.9 401 24.4
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 1.6e-09 68.2 228 26.3
COL.COLO4_17605 Corchorus olitorius HOM05D008023 ORTHO05D002944 2.1e-09 67.8 224 25.9
Gohir.A10G031400 Gossypium hirsutum HOM05D004563 ORTHO05D002944 2.1e-09 67.8 384 23.2
Nitab4.5_0003322g0040 Nicotiana tabacum HOM05D014572 ORTHO05D016880 2.1e-09 67.8 388 26.0
TWI38G0108 Tripterygium wilfordii HOM05D032972 ORTHO05D037803 2.1e-09 67.8 167 32.3
Gorai.010G159000 Gossypium raimondii HOM05D004563 ORTHO05D002944 2.7e-09 67.4 102 38.2
Ca_01462_v3 Cicer arietinum L. HOM05D004563 ORTHO05D002944 3.6e-09 67.0 390 24.1
CSS0038794 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 4.7e-09 66.6 164 28.7
Dinv15459 Davidia involucrata HOM05D004563 ORTHO05D002944 4.7e-09 66.6 377 23.9
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 6.1e-09 66.2 406 22.7
vmacro12368 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 6.1e-09 66.2 420 21.0
CSS0022203 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 8.0e-09 65.9 135 31.9
Gohir.D10G032200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 8.0e-09 65.9 387 22.5
Gohir.D06G136800 Gossypium hirsutum HOM05D004563 ORTHO05D002944 1.0e-08 65.5 102 37.3
CSS0041377 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.4e-08 65.1 133 30.8
VMungo1080G1187 Vigna mungo HOM05D002364 ORTHO05D002540 1.4e-08 65.1 393 25.7
Gorai.011G033900 Gossypium raimondii HOM05D004563 ORTHO05D002944 3.0e-08 63.9 387 22.7
Solyc07g053320.4 Solanum lycopersicum HOM05D004563 ORTHO05D002944 3.0e-08 63.9 402 22.4
MSTRG.14316 Avicennia marina HOM05D004563 ORTHO05D002944 4.0e-08 63.5 395 23.8
Lalb_Chr03g0029881 Lupinus albus HOM05D004563 ORTHO05D002944 4.0e-08 63.5 425 23.8
Aqoxy4G00427 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 5.2e-08 63.2 451 24.8
ClCG02G017950 Citrullus lanatus HOM05D004563 ORTHO05D002944 5.2e-08 63.2 418 23.2
FvH4_6g27121 Fragaria vesca HOM05D004563 ORTHO05D002944 5.2e-08 63.2 409 24.2
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 6.7e-08 62.8 87 36.8
Hma1.2p1_0178F.1_g078980 Hydrangea macrophylla HOM05D004563 ORTHO05D002944 6.7e-08 62.8 137 37.2
Lj3g0000357 Lotus japonicus HOM05D004563 ORTHO05D002944 6.7e-08 62.8 410 23.4
Nitab4.5_0003827g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 6.7e-08 62.8 420 23.8
FAN14G3451 Fragaria x ananassa HOM05D004563 ORTHO05D002944 8.8e-08 62.4 409 24.0
Peaxi162Scf00469g00139 Petunia axillaris HOM05D004563 ORTHO05D002944 8.8e-08 62.4 410 24.9
Sed0020403 Sechium edule HOM05D004563 ORTHO05D002944 8.8e-08 62.4 415 22.7
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 1.2e-07 62.0 411 22.4
HanXRQChr17g0557991 Helianthus annuus HOM05D004563 ORTHO05D002944 1.5e-07 61.6 403 21.3
Peaxi162Scf00261g01114 Petunia axillaris HOM05D014572 ORTHO05D016880 2.0e-07 61.2 363 24.0
Sopen07g027280 Solanum pennellii HOM05D004563 ORTHO05D002944 2.0e-07 61.2 400 23.8
Duzib147G1211 Durio zibethinus HOM05D004563 ORTHO05D002944 2.6e-07 60.8 425 22.1
RcHm_v2.0_Chr2g0129081 Rosa chinensis HOM05D004563 ORTHO05D002944 2.6e-07 60.8 409 22.2
Nitab4.5_0006772g0010 Nicotiana tabacum HOM05D004563 ORTHO05D002944 3.3e-07 60.5 417 24.0
Gorai.011G124100 Gossypium raimondii HOM05D004563 ORTHO05D002944 5.7e-07 59.7 423 22.2
MBI06_g25989_MAGBIO Magnolia biondii HOM05D004563 ORTHO05D002944 5.7e-07 59.7 440 22.7
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 5.7e-07 59.7 473 23.7
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 7.5e-07 59.3 54 44.4
AT2G31130 Arabidopsis thaliana HOM05D004563 ORTHO05D002944 9.7e-07 58.9 57 40.4
arahy.Tifrunner.gnm1.ann1.B2LHN7 Arachis hypogaea HOM05D004563 ORTHO05D002944 9.7e-07 58.9 389 23.4
Cc05_g08130 Coffea canephora HOM05D004563 ORTHO05D002944 1.3e-06 58.5 394 21.1
Ca_18892_v3 Cicer arietinum L. HOM05D004563 ORTHO05D002944 1.7e-06 58.2 424 23.8
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 2.2e-06 57.8 487 21.4
Dinv14971 Davidia involucrata HOM05D000845 ORTHO05D003813 2.2e-06 57.8 114 32.5
Gohir.D05G344300 Gossypium hirsutum HOM05D008023 ORTHO05D002944 2.2e-06 57.8 162 30.9
Gorai.009G372300 Gossypium raimondii HOM05D008023 ORTHO05D002944 2.2e-06 57.8 162 30.9
PSO675G1487 Papaver somniferum HOM05D004563 ORTHO05D002944 2.2e-06 57.8 79 35.4
Phvul.011G134500 Phaseolus vulgaris HOM05D004563 ORTHO05D002944 2.8e-06 57.4 361 23.3
TPR.G30391 Trifolium pratense HOM05D004563 ORTHO05D002944 2.8e-06 57.4 57 43.9
SalBow7G0314 Salvia bowleyana HOM05D004563 ORTHO05D002944 3.7e-06 57.0 402 22.9
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 4.8e-06 56.6 375 22.4
Dinv03911 Davidia involucrata HOM05D004563 ORTHO05D002944 4.8e-06 56.6 87 32.2
Solyc12g010830.2 Solanum lycopersicum HOM05D004563 ORTHO05D002944 4.8e-06 56.6 67 38.8
Sopen12g006190 Solanum pennellii HOM05D004563 ORTHO05D002944 4.8e-06 56.6 67 38.8
PGSC0003DMG400007808 Solanum tuberosum HOM05D004563 ORTHO05D002944 4.8e-06 56.6 67 38.8
Lsat_1_v5_gn_8_140081 Lactuca sativa HOM05D004563 ORTHO05D002944 6.3e-06 56.2 404 22.5
AL4G26310 Arabidopsis lyrata HOM05D004563 ORTHO05D002944 8.2e-06 55.8 57 38.6
DCAR_013061 Daucus carota HOM05D004563 ORTHO05D002944 8.2e-06 55.8 405 23.5
PSO541G0319 Papaver somniferum HOM05D004563 ORTHO05D002944 8.2e-06 55.8 79 34.2
Psat7g166160 Pisum sativum HOM05D004563 ORTHO05D002944 8.2e-06 55.8 57 42.1


User provided reference genes

Program Settings