Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 3.9e-104 381.7 230 100.0
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 2.7e-89 332.4 228 85.1
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 5.3e-85 318.2 230 78.3
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 9.1e-85 317.4 230 80.9
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 1.0e-83 313.9 227 82.4
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 8.0e-81 304.3 227 71.8
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 1.0e-80 303.9 227 79.3
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 5.2e-80 301.6 230 76.5
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 5.2e-80 301.6 230 77.0
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 7.5e-79 297.7 228 77.2
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 1.7e-78 296.6 230 77.0
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 6.3e-78 294.7 230 75.7
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 2.4e-77 292.7 227 79.7
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 5.3e-77 291.6 230 74.8
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 7.0e-77 291.2 226 75.7
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 1.0e-75 287.3 227 74.4
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 2.9e-75 285.8 231 73.6
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 8.5e-75 284.3 231 73.2
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 1.5e-74 283.5 226 76.1
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 7.2e-74 281.2 230 72.6
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 1.6e-73 280.0 230 72.6
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 2.1e-73 279.6 227 76.2
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 1.8e-72 276.6 230 73.0
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.3e-72 276.2 230 71.7
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.3e-72 276.2 230 73.5
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 2.3e-72 276.2 230 73.5
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 3.0e-72 275.8 230 74.3
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 3.0e-72 275.8 227 69.2
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 4.0e-72 275.4 227 73.6
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 5.2e-72 275.0 231 71.9
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 6.8e-72 274.6 230 76.5
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 6.8e-72 274.6 226 76.5
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 2.6e-71 272.7 229 69.9
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 9.8e-71 270.8 229 70.7
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 1.7e-70 270.0 229 70.7
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 2.2e-70 269.6 229 70.3
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 3.7e-70 268.9 225 72.0
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 6.3e-70 268.1 229 70.3
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 2.4e-69 266.2 225 69.8
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 3.8e-67 258.8 225 70.7
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 1.1e-66 257.3 227 69.6
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 1.5e-66 256.9 228 67.5
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 1.5e-66 256.9 230 69.6
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 1.9e-66 256.5 226 70.4
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 2.5e-66 256.1 230 70.0
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 2.5e-66 256.1 230 69.6
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 9.5e-66 254.2 222 72.1
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 1.2e-65 253.8 229 69.0
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 3.6e-65 252.3 228 67.1
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 4.7e-65 251.9 235 67.7
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 3.0e-64 249.2 225 68.9
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 8.9e-64 247.7 230 67.4
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 8.9e-64 247.7 227 67.4
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 2.6e-63 246.1 230 69.1
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 3.4e-63 245.7 247 63.6
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 3.4e-63 245.7 249 63.1
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 9.8e-63 244.2 230 67.0
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 3.7e-62 242.3 229 66.4
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 6.3e-62 241.5 228 64.9
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 8.3e-62 241.1 230 66.1
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 1.1e-61 240.7 225 64.9
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 1.4e-61 240.4 230 68.7
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 3.1e-61 239.2 257 64.2
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 4.1e-61 238.8 230 65.7
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 7.0e-61 238.0 226 64.2
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 1.2e-60 237.3 230 68.3
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 4.5e-60 235.3 230 65.2
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 4.5e-60 235.3 229 68.6
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 7.8e-60 234.6 228 61.4
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 7.8e-60 234.6 223 59.2
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.0e-59 234.2 229 64.2
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.7e-59 233.4 229 63.3
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 1.7e-59 233.4 230 57.8
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 5.0e-59 231.9 227 64.3
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 8.6e-59 231.1 230 63.9
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 7.3e-58 228.0 229 59.8
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 1.6e-57 226.9 226 61.5
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 1.6e-57 226.9 230 66.5
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 2.1e-57 226.5 230 62.6
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 4.7e-57 225.3 231 64.5
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 1.4e-56 223.8 226 62.8
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 4.0e-56 222.2 237 64.6
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 1.5e-55 220.3 226 58.0
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 1.5e-55 220.3 230 63.5
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 2.0e-55 219.9 226 62.8
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 2.6e-55 219.5 230 66.1
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 5.8e-55 218.4 226 61.1
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 7.5e-55 218.0 226 63.3
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 2.2e-54 216.5 230 62.2
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 4.9e-54 215.3 233 61.8
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.4e-53 213.0 151 74.8
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 3.2e-53 212.6 329 49.2
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 2.7e-52 209.5 228 60.5
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 6.0e-52 208.4 228 58.8
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.0e-51 207.6 228 58.8
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 2.3e-51 206.5 226 59.3
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 3.9e-51 205.7 226 61.1
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 6.6e-51 204.9 226 57.5
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 7.3e-50 201.4 227 59.9
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 1.5e-47 193.7 230 60.9
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 2.0e-47 193.4 230 61.3
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 2.6e-47 193.0 226 58.4
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 2.6e-47 193.0 226 58.8
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.4e-47 192.6 228 49.1
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 9.8e-47 191.0 226 58.4
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.3e-46 190.7 226 58.0
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 2.4e-45 186.4 226 58.0
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 3.2e-45 186.0 226 58.0
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 1.2e-44 184.1 226 58.0
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 2.1e-44 183.3 226 58.0
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 2.7e-44 183.0 226 55.3
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 3.5e-44 182.6 227 58.1
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 4.6e-44 182.2 226 57.5
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 9.5e-42 174.5 188 62.8
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 1.8e-40 170.2 229 55.0
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 6.8e-40 168.3 211 57.8
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 9.9e-39 164.5 97 80.4
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 2.2e-30 136.7 226 47.8
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 1.0e-27 127.9 66 89.4
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.0e-27 126.3 226 41.2
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 7.3e-26 121.7 96 63.5
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 3.6e-25 119.4 79 73.4
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 6.2e-25 118.6 226 39.4
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 2.4e-24 116.7 224 40.6
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 1.7e-22 110.5 68 76.5
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 2.2e-22 110.2 229 35.8
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 8.4e-22 108.2 223 41.7
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 7.1e-13 78.6 162 37.0
PSO541G1702 Papaver somniferum HOM05D006255 ORTHO05D008014 3.3e-10 69.7 167 40.1
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 8.1e-09 65.1 40 75.0
CDE09G1089 Ceratophyllum demersum HOM05D003023 ORTHO05D003412 4.0e-08 62.8 77 68.8
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 1.5e-07 60.8 80 41.2


User provided reference genes

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