Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.3e-164 581.6 292 100.0
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 1.2e-158 563.1 292 96.6
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 2.5e-103 379.4 297 68.4
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 7.2e-103 377.9 298 68.5
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 1.3e-99 367.1 298 66.1
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 2.2e-99 366.3 300 65.0
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 8.2e-99 364.4 300 65.0
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 2.4e-98 362.8 296 65.2
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 3.1e-98 362.5 298 65.4
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 3.1e-98 362.5 298 65.1
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 3.1e-98 362.5 296 65.5
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 3.1e-98 362.5 302 65.6
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 4.1e-98 362.1 298 64.8
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 5.3e-98 361.7 296 65.2
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 9.1e-98 360.9 300 65.0
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 4.5e-97 358.6 297 64.3
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 7.7e-97 357.8 297 64.0
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 1.0e-96 357.5 298 63.8
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 1.3e-96 357.1 298 66.1
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 1.7e-96 356.7 298 64.8
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 2.9e-96 355.9 297 64.0
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 6.5e-96 354.8 300 63.0
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 1.1e-95 354.0 298 63.1
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 1.5e-95 353.6 297 63.3
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 1.5e-95 353.6 295 64.4
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 2.5e-95 352.8 298 63.1
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 5.5e-95 351.7 299 62.9
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 7.2e-95 351.3 300 64.3
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 7.2e-95 351.3 295 63.1
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 1.2e-94 350.5 296 64.2
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 2.1e-94 349.7 295 64.1
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 2.1e-94 349.7 295 62.7
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 2.7e-94 349.4 296 62.8
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 2.7e-94 349.4 303 62.4
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 3.6e-94 349.0 298 61.7
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 6.1e-94 348.2 298 63.1
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 8.0e-94 347.8 297 62.3
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 8.0e-94 347.8 300 61.7
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 1.0e-93 347.4 300 61.0
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 2.3e-93 346.3 297 61.3
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 2.3e-93 346.3 297 62.6
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 3.0e-93 345.9 295 62.7
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 5.2e-93 345.1 297 63.0
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 1.2e-92 344.0 300 60.0
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 1.5e-92 343.6 297 63.0
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 1.5e-92 343.6 296 61.8
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 1.5e-92 343.6 297 60.3
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 2.0e-92 343.2 297 60.6
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 2.6e-92 342.8 299 62.2
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 3.4e-92 342.4 299 61.5
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 3.4e-92 342.4 301 62.5
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 4.4e-92 342.0 297 62.3
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 7.5e-92 341.3 297 63.0
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 9.8e-92 340.9 297 62.3
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 9.8e-92 340.9 295 60.7
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 1.7e-91 340.1 298 63.4
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 2.2e-91 339.7 297 60.9
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 2.8e-91 339.3 298 59.7
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 4.8e-91 338.6 298 61.1
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 6.3e-91 338.2 301 61.5
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 8.3e-91 337.8 298 59.4
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 8.3e-91 337.8 300 59.0
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 8.3e-91 337.8 300 61.0
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 8.3e-91 337.8 284 65.1
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 1.1e-90 337.4 296 60.8
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 1.4e-90 337.0 300 59.0
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 1.8e-90 336.7 300 59.0
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 1.8e-90 336.7 300 60.7
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 3.1e-90 335.9 300 58.7
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 4.1e-90 335.5 296 59.8
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 4.1e-90 335.5 298 61.1
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 9.1e-90 334.3 305 60.0
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 1.6e-89 333.6 297 59.3
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 1.6e-89 333.6 300 60.3
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 2.0e-89 333.2 298 60.1
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 2.7e-89 332.8 296 60.8
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 7.7e-89 331.3 300 58.0
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 2.2e-88 329.7 299 60.9
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 2.2e-88 329.7 297 59.9
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 2.9e-88 329.3 298 61.1
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 2.9e-88 329.3 298 60.4
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 2.9e-88 329.3 300 59.7
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 3.8e-88 328.9 300 59.7
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 6.5e-88 328.2 296 60.1
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 6.5e-88 328.2 299 59.9
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 8.5e-88 327.8 299 59.2
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 2.5e-87 326.2 300 58.7
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 3.2e-87 325.9 299 58.9
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 4.2e-87 325.5 299 58.5
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 1.6e-86 323.6 297 61.6
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.6e-86 323.6 300 59.3
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 1.6e-86 323.6 297 59.6
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 2.1e-86 323.2 299 58.2
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 3.6e-86 322.4 300 59.7
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 3.6e-86 322.4 301 58.8
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 4.7e-86 322.0 299 58.9
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 4.7e-86 322.0 299 58.9
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 4.7e-86 322.0 305 58.4
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 6.1e-86 321.6 292 60.6
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 8.0e-86 321.2 299 57.9
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 8.0e-86 321.2 298 58.7
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 1.0e-85 320.9 299 57.9
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 1.0e-85 320.9 299 58.5
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 1.0e-85 320.9 299 58.5
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 1.0e-85 320.9 299 58.5
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 1.0e-85 320.9 299 58.5
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 1.0e-85 320.9 299 56.9
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 1.8e-85 320.1 299 59.9
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 3.0e-85 319.3 298 59.1
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 1.5e-84 317.0 298 58.4
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 3.4e-84 315.8 298 59.4
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 7.5e-84 314.7 299 57.2
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 1.8e-82 310.1 301 56.8
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 2.7e-81 306.2 296 56.4
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 1.5e-79 300.4 297 55.9
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 1.5e-79 300.4 283 60.4
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 1.5e-79 300.4 279 58.4
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 1.9e-79 300.1 307 57.0
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 6.1e-78 295.0 188 80.3
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 1.0e-77 294.3 300 55.0
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 4.1e-66 255.8 233 61.8
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 4.1e-66 255.8 233 61.8
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 6.6e-64 248.4 297 48.8
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 6.6e-64 248.4 297 48.8
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 8.6e-64 248.1 301 44.9
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.9e-63 246.9 297 49.2
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.6e-63 245.4 298 47.7
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 6.2e-62 241.9 303 46.9
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 3.1e-61 239.6 235 55.7
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 5.2e-61 238.8 297 47.5
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 5.2e-61 238.8 215 62.3
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 2.0e-52 210.3 314 40.8
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 3.1e-45 186.4 209 53.6
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.1e-42 177.9 303 38.9
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 4.2e-42 176.0 177 55.4
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 2.1e-41 173.7 169 58.0
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 2.8e-38 163.3 300 36.3
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 4.8e-38 162.5 304 35.2
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 9.0e-37 158.3 164 54.9
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 3.8e-35 152.9 305 35.4
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 4.9e-35 152.5 102 67.6
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 8.7e-32 141.7 303 35.0
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 4.8e-30 136.0 299 33.4
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 7.1e-26 122.1 142 46.5
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 7.6e-20 102.1 139 44.6
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 3.3e-15 86.7 57 73.7


User provided reference genes

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