Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039896 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D008175 1.7e-45 185.7 93 100.0
CSS0012531 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D008175 2.7e-43 178.3 93 96.8
CSS0039568 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D008175 2.9e-37 158.3 84 95.2
ATR0665G429 Amborella trichopoda HOM05D002561 ORTHO05D008175 6.4e-37 157.1 84 94.0
TWI56G0768 Tripterygium wilfordii HOM05D002561 ORTHO05D008175 8.3e-37 156.8 84 94.0
PGR031G3600 Punica granatum HOM05D002561 ORTHO05D008175 1.1e-36 156.4 88 89.8
Gohir.A05G190200 Gossypium hirsutum HOM05D002561 ORTHO05D008175 1.4e-36 156.0 84 92.9
Gohir.D05G193600 Gossypium hirsutum HOM05D002561 ORTHO05D008175 1.4e-36 156.0 84 92.9
Gorai.009G198600 Gossypium raimondii HOM05D002561 ORTHO05D008175 1.4e-36 156.0 84 92.9
Nn5g29715 Nelumbo nucifera HOM05D002561 ORTHO05D008175 1.4e-36 156.0 84 92.9
TAR381G1262 Trochodendron aralioides HOM05D002561 ORTHO05D008175 1.4e-36 156.0 84 92.9
Atru.chr13.400 Acer truncatum HOM05D002561 ORTHO05D008175 1.9e-36 155.6 84 92.9
Cfa013881 Carpinus fangiana HOM05D002561 ORTHO05D008175 1.9e-36 155.6 84 92.9
Ciclev10000772m.g Citrus clementina HOM05D002561 ORTHO05D008175 1.9e-36 155.6 84 92.9
CiPaw.08G060900 Carya illinoinensis HOM05D002561 ORTHO05D008175 3.2e-36 154.8 84 91.7
Thecc.08G034100 Theobroma cacao HOM05D002561 ORTHO05D008175 3.2e-36 154.8 84 91.7
CANSAT25G1258 Cannabis sativa HOM05D002561 ORTHO05D008175 4.1e-36 154.5 84 91.7
FvH4_2g39280 Fragaria vesca HOM05D002561 ORTHO05D008175 4.1e-36 154.5 84 91.7
FAN15G1503 Fragaria x ananassa HOM05D002561 ORTHO05D008175 4.1e-36 154.5 84 91.7
FAN20G1367 Fragaria x ananassa HOM05D002561 ORTHO05D008175 4.1e-36 154.5 84 91.7
FAN26G2864 Fragaria x ananassa HOM05D002561 ORTHO05D008175 4.1e-36 154.5 84 91.7
FAN27G3197 Fragaria x ananassa HOM05D002561 ORTHO05D008175 4.1e-36 154.5 84 91.7
Prupe.1G373900 Prunus persica HOM05D002561 ORTHO05D008175 4.1e-36 154.5 84 91.7
MD15G1022100 Malus domestica HOM05D002561 ORTHO05D008175 5.4e-36 154.1 84 91.7
Potri.002G031100 Populus trichocarpa HOM05D002561 ORTHO05D008175 5.4e-36 154.1 84 91.7
AL8G34040 Arabidopsis lyrata HOM05D002561 ORTHO05D008175 9.2e-36 153.3 84 90.5
AT5G57960 Arabidopsis thaliana HOM05D002561 ORTHO05D008175 9.2e-36 153.3 84 90.5
BcaB05g22389 Brassica carinata HOM05D002561 ORTHO05D008175 9.2e-36 153.3 84 90.5
A02p08080 Brassica napus HOM05D002561 ORTHO05D008175 9.2e-36 153.3 84 90.5
C02p13730 Brassica napus HOM05D002561 ORTHO05D008175 9.2e-36 153.3 84 90.5
BolC2t07491H Brassica oleracea HOM05D002561 ORTHO05D008175 9.2e-36 153.3 84 90.5
BraA02t05881Z Brassica rapa HOM05D002561 ORTHO05D008175 9.2e-36 153.3 84 90.5
MELO3C003793.2 Cucumis melo HOM05D002561 ORTHO05D008175 9.2e-36 153.3 84 90.5
CsaV3_3G045490 Cucumis sativus L. HOM05D002561 ORTHO05D008175 9.2e-36 153.3 84 90.5
Duzib093G1612 Durio zibethinus HOM05D002561 ORTHO05D008175 9.2e-36 153.3 84 91.7
Thhalv10013185m.g Eutrema salsugineum HOM05D002561 ORTHO05D008175 9.2e-36 153.3 84 90.5
Sed0027585 Sechium edule HOM05D002561 ORTHO05D008175 9.2e-36 153.3 84 90.5
RcHm_v2.0_Chr6g0301721 Rosa chinensis HOM05D002561 ORTHO05D008175 1.2e-35 152.9 84 90.5
Aqoxy5G01541 Aquilegia oxysepala HOM05D002561 ORTHO05D008175 1.6e-35 152.5 84 90.5
EL10Ac1g00604 Beta vulgaris HOM05D002561 ORTHO05D008175 2.7e-35 151.8 84 90.5
Carub.0008s1849 Capsella rubella HOM05D002561 ORTHO05D008175 2.7e-35 151.8 84 89.3
Eucgr.F01859 Eucalyptus grandis HOM05D002561 ORTHO05D008175 2.7e-35 151.8 84 90.5
PSO731G0115 Papaver somniferum HOM05D002561 ORTHO05D008175 2.7e-35 151.8 84 90.5
PSO764G0318 Papaver somniferum HOM05D002561 ORTHO05D008175 2.7e-35 151.8 84 90.5
Sp6g19630 Schrenkiella parvula HOM05D002561 ORTHO05D008175 2.7e-35 151.8 84 89.3
CARHR271740 Cardamine hirsuta HOM05D002561 ORTHO05D008175 3.5e-35 151.4 84 88.1
CDE06G0545 Ceratophyllum demersum HOM05D002561 ORTHO05D008175 3.5e-35 151.4 84 89.3
Hma1.2p1_0469F.1_g158880 Hydrangea macrophylla HOM05D002561 ORTHO05D008175 4.6e-35 151.0 84 89.3
Hma1.2p1_0469F.1_g158890 Hydrangea macrophylla HOM05D002561 ORTHO05D008175 4.6e-35 151.0 84 89.3
GSVIVG01009778001 Vitis vinifera HOM05D002561 ORTHO05D008175 4.6e-35 151.0 86 90.7
Zm00001eb167660 Zea mays HOM05D002561 ORTHO05D008175 6.0e-35 150.6 84 89.3
AUR62014473 Chenopodium quinoa HOM05D002561 ORTHO05D008175 7.8e-35 150.2 84 90.5
AUR62034526 Chenopodium quinoa HOM05D002561 ORTHO05D008175 7.8e-35 150.2 84 90.5
Os11g0592700 Oryza sativa ssp. japonica HOM05D002561 ORTHO05D008175 7.8e-35 150.2 84 89.3
Glyma.17G253900 Glycine max HOM05D002561 ORTHO05D008175 1.0e-34 149.8 84 88.1
Lj5g0007882 Lotus japonicus HOM05D002561 ORTHO05D008175 1.0e-34 149.8 84 88.1
Manes.05G154700 Manihot esculenta HOM05D002561 ORTHO05D008175 1.0e-34 149.8 84 88.1
Medtr1g022980 Medicago truncatula HOM05D002561 ORTHO05D008175 1.0e-34 149.8 84 88.1
Phvul.001G011200 Phaseolus vulgaris HOM05D002561 ORTHO05D008175 1.0e-34 149.8 84 88.1
HPP92_013175 Vanilla planifolia HOM05D002561 ORTHO05D008175 1.0e-34 149.8 84 86.9
VMungo0647G1104 Vigna mungo HOM05D002561 ORTHO05D008175 1.0e-34 149.8 84 88.1
Cc10_g02420 Coffea canephora HOM05D002561 ORTHO05D008175 1.7e-34 149.1 84 88.1
Nitab4.5_0013623g0010 Nicotiana tabacum HOM05D002561 ORTHO05D008175 1.7e-34 149.1 84 88.1
Solyc04g080770.3 Solanum lycopersicum HOM05D002561 ORTHO05D008175 1.7e-34 149.1 84 88.1
Sopen04g034360 Solanum pennellii HOM05D002561 ORTHO05D008175 1.7e-34 149.1 84 88.1
Ah.05g180860 Amaranthus hybridus HOM05D002561 ORTHO05D008175 2.3e-34 148.7 84 89.3
Psat6g009920 Pisum sativum HOM05D002561 ORTHO05D008175 2.3e-34 148.7 84 86.9
Actinidia15362 Actinidia chinensis HOM05D002561 ORTHO05D008175 3.0e-34 148.3 93 83.9
Ca_30047_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 3.0e-34 148.3 84 86.9
CSS0025846 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D008175 3.9e-34 147.9 93 83.9
Lj4A33G81 Lonicera japonica HOM05D002561 ORTHO05D008175 3.9e-34 147.9 84 88.1
Hund17196 Selenicereus undatus HOM05D002561 ORTHO05D008175 3.9e-34 147.9 82 89.0
Haze_22559 Corylus avellana HOM05D002561 ORTHO05D008175 5.0e-34 147.5 94 83.0
HPP92_013174 Vanilla planifolia HOM05D002561 ORTHO05D008175 5.0e-34 147.5 84 85.7
Sc15g0007160 Simmondsia chinensis HOM05D002561 ORTHO05D008175 6.6e-34 147.1 84 86.9
HanXRQChr05g0151221 Helianthus annuus HOM05D002561 ORTHO05D008175 8.6e-34 146.7 84 86.9
SalBow8G2957 Salvia bowleyana HOM05D002561 ORTHO05D008175 1.1e-33 146.4 84 88.1
SalBow8G4848 Salvia bowleyana HOM05D002561 ORTHO05D008175 1.1e-33 146.4 84 88.1
Lsat_1_v5_gn_5_26741 Lactuca sativa HOM05D002561 ORTHO05D008175 1.5e-33 146.0 84 86.9
CSS0005893 Camellia sinensis var. sinensis HOM05D002561 ORTHO05D008175 1.9e-33 145.6 93 82.8
Migut.N03115 Erythranthe guttata HOM05D002561 ORTHO05D008175 2.5e-33 145.2 84 86.9
SGA_v2.0_scaffold162G37906 Striga asiatica HOM05D002561 ORTHO05D008175 4.3e-33 144.4 84 85.7
unitig_22.g6786 Utricularia gibba HOM05D002561 ORTHO05D008175 4.3e-33 144.4 84 85.7
CAN.G851.43 Capsicum annuum HOM05D002561 ORTHO05D008175 7.3e-33 143.7 84 86.9
PGSC0003DMG400003749 Solanum tuberosum HOM05D002561 ORTHO05D008175 2.1e-32 142.1 91 81.3
Pp3c26_340 Physcomitrium patens HOM05D002561 ORTHO05D008175 2.8e-32 141.7 84 84.5
SMO364G0133 Selaginella moellendorffii HOM05D002561 ORTHO05D008175 2.8e-32 141.7 84 84.5
AagrBONN_evm.TU.Sc2ySwM_117.3804 Anthoceros agrestis HOM05D002561 ORTHO05D008175 8.1e-32 140.2 84 83.3
TPR.G30486 Trifolium pratense HOM05D002561 ORTHO05D008175 8.1e-32 140.2 85 84.7
Nitab4.5_0001861g0050 Nicotiana tabacum HOM05D002561 ORTHO05D008175 1.8e-31 139.0 84 85.7
Mapoly0064s0088 Marchantia polymorpha HOM05D002561 ORTHO05D008175 4.0e-31 137.9 84 83.3
Oeu046223.1 Olea europaea HOM05D002561 ORTHO05D008175 2.0e-30 135.6 111 67.6
arahy.Tifrunner.gnm1.ann1.1U19Q5 Arachis hypogaea HOM05D002561 ORTHO05D008175 2.6e-30 135.2 109 67.0
DCAR_017516 Daucus carota HOM05D002561 ORTHO05D008175 2.2e-29 132.1 109 67.9
Peaxi162Scf00189g00816 Petunia axillaris HOM05D002561 ORTHO05D008175 2.2e-29 132.1 109 67.0
Cre16.g665650 Chlamydomonas reinhardtii HOM05D002561 ORTHO05D008175 6.2e-24 114.0 91 68.1
PRCOL_00004156 Prasinoderma coloniale HOM05D002561 ORTHO05D008175 1.1e-23 113.2 93 65.6
MCO16G051 Micromonas commoda HOM05D002561 ORTHO05D008175 4.4e-22 107.8 88 62.5
Sabra02G0024900 Salix brachista HOM05D002561 ORTHO05D008175 1.4e-20 102.8 84 66.7
Aa31sc143G30 Aethionema arabicum HOM05D002561 ORTHO05D008175 7.1e-20 100.5 84 64.3
COL.COLO4_26238 Corchorus olitorius HOM05D002561 ORTHO05D008175 2.1e-19 99.0 84 64.3
ClCG05G018690 Citrullus lanatus HOM05D002561 ORTHO05D008175 4.6e-19 97.8 84 63.1
MBI05_g12583_MAGBIO Magnolia biondii HOM05D002561 ORTHO05D008175 7.3e-17 90.5 76 64.5
Rhsim06G0028500 Rhododendron simsii HOM05D002561 ORTHO05D008175 2.8e-16 88.6 66 71.2
arahy.Tifrunner.gnm1.ann1.M2UU0S Arachis hypogaea HOM05D002561 ORTHO05D008175 3.1e-15 85.1 47 83.0
Ca_13381_v3 Cicer arietinum L. HOM05D002561 ORTHO05D006466 5.2e-15 84.3 56 75.0
SEGI_28186 Sequoiadendron giganteum HOM05D002561 ORTHO05D008175 1.5e-14 82.8 45 86.7
arahy.Tifrunner.gnm1.ann1.NIBJ6A Arachis hypogaea HOM05D002561 ORTHO05D008175 3.8e-13 78.2 57 70.2
Lalb_Chr14g0369561 Lupinus albus HOM05D002561 ORTHO05D008175 3.8e-13 78.2 41 85.4
Haze_27107 Corylus avellana HOM05D002561 ORTHO05D008175 3.2e-12 75.1 84 52.4
QL02p010154 Quercus lobata HOM05D002561 ORTHO05D008175 2.1e-11 72.4 41 90.2
HPP92_013173 Vanilla planifolia HOM05D002561 ORTHO05D008175 3.5e-11 71.6 44 81.8
Lalb_Chr14g0369571 Lupinus albus HOM05D002561 ORTHO05D008175 1.3e-10 69.7 41 82.9
QL02p010149 Quercus lobata HOM05D002561 ORTHO05D008175 1.3e-08 63.2 31 90.3
Cpa.g.sc140.4 Carica papaya HOM05D002561 ORTHO05D008175 4.8e-08 61.2 31 87.1
CBR_g52689 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-07 59.3 39 79.5


User provided reference genes

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