Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039890 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.6e-112 408.7 201 100.0
CSS0011133 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.2e-106 389.0 206 94.2
CSS0017033 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.1e-102 376.7 204 91.2
CSS0004377 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 4.5e-96 354.8 200 89.0
CSS0036794 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.2e-88 330.1 189 87.8
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 6.5e-71 271.2 179 73.2
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 8.8e-68 260.8 183 69.4
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 2.8e-66 255.8 185 68.1
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 3.7e-66 255.4 189 66.7
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 1.0e-63 247.3 197 63.5
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 1.7e-63 246.5 181 67.4
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 1.1e-62 243.8 192 60.9
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 1.9e-62 243.0 183 67.8
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 1.9e-62 243.0 173 68.2
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 7.2e-62 241.1 196 59.2
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 8.9e-60 234.2 191 61.8
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 1.2e-59 233.8 193 63.7
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 1.5e-59 233.4 195 56.9
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 3.4e-59 232.3 180 64.4
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 3.4e-59 232.3 180 61.7
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 4.4e-59 231.9 195 58.5
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 1.7e-58 229.9 183 61.2
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 1.7e-58 229.9 184 60.9
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 3.7e-58 228.8 177 62.7
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 3.1e-57 225.7 191 60.7
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 7.0e-57 224.6 178 61.2
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 1.6e-56 223.4 190 56.3
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 2.7e-56 222.6 190 60.0
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 3.5e-56 222.2 191 58.1
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 4.5e-56 221.9 178 60.7
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 7.8e-56 221.1 191 57.6
MSTRG.18275 Avicennia marina HOM05D003827 ORTHO05D004518 2.9e-55 219.2 176 62.5
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 3.8e-55 218.8 184 60.3
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 8.6e-55 217.6 183 60.1
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 1.1e-54 217.2 193 56.5
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 1.5e-54 216.9 191 57.1
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 1.9e-54 216.5 182 58.2
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 2.5e-54 216.1 176 61.4
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 2.5e-54 216.1 184 57.6
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 3.3e-54 215.7 181 59.1
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 4.3e-54 215.3 179 60.9
Gohir.D07G213901 Gossypium hirsutum HOM05D003827 ORTHO05D004518 4.3e-54 215.3 190 58.4
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 5.6e-54 214.9 191 59.2
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 9.5e-54 214.2 191 57.1
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 1.6e-53 213.4 177 59.3
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 3.6e-53 212.2 190 57.9
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 1.2e-51 207.2 191 56.0
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 1.5e-51 206.8 177 56.5
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 2.6e-51 206.1 197 54.8
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 4.4e-51 205.3 190 55.8
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 4.4e-51 205.3 195 52.3
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 4.4e-51 205.3 195 52.3
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 5.8e-51 204.9 195 52.3
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 7.5e-51 204.5 188 56.9
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 1.7e-50 203.4 194 55.2
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 3.7e-50 202.2 188 54.3
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 3.7e-50 202.2 186 55.4
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 4.9e-50 201.8 192 56.2
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 8.3e-50 201.1 197 52.8
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 8.3e-50 201.1 176 56.2
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 2.4e-49 199.5 178 57.9
TAR633G0743 Trochodendron aralioides HOM05D003827 ORTHO05D004518 2.4e-49 199.5 186 53.8
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.0e-48 196.4 197 52.3
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 2.7e-48 196.1 176 57.4
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 3.5e-48 195.7 176 58.5
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 7.8e-48 194.5 176 57.4
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 7.8e-48 194.5 175 57.1
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 5.0e-47 191.8 190 54.7
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 6.6e-47 191.4 173 56.6
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 8.6e-47 191.0 194 53.1
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 1.9e-46 189.9 181 54.1
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 1.9e-46 189.9 181 54.1
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 2.5e-46 189.5 176 56.2
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 3.3e-46 189.1 177 54.2
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 7.3e-46 188.0 181 53.6
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 9.5e-46 187.6 190 51.6
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 1.2e-45 187.2 190 51.6
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 1.6e-45 186.8 193 54.9
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 1.6e-45 186.8 191 51.8
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 2.1e-45 186.4 188 51.6
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 4.7e-45 185.3 178 51.1
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 4.7e-45 185.3 186 52.7
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 6.2e-45 184.9 191 49.7
Ah.11g050100 Amaranthus hybridus HOM05D003827 ORTHO05D004518 1.4e-44 183.7 181 52.5
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 1.4e-44 183.7 199 49.2
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 1.8e-44 183.3 184 52.7
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 1.8e-44 183.3 184 52.7
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 3.1e-44 182.6 182 54.4
Lalb_Chr06g0162731 Lupinus albus HOM05D003827 ORTHO05D004518 4.0e-44 182.2 195 46.7
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 8.9e-44 181.0 186 50.5
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 1.2e-43 180.6 180 50.6
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 1.2e-43 180.6 186 50.0
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 2.0e-43 179.9 198 48.5
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 3.4e-43 179.1 184 50.5
SGA_v2.0_scaffold81G26054 Striga asiatica HOM05D003827 ORTHO05D004518 2.2e-42 176.4 194 50.5
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 2.2e-42 176.4 198 47.5
Psat6g058320 Pisum sativum HOM05D003827 ORTHO05D004518 4.9e-42 175.3 196 46.9
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 6.4e-42 174.9 198 47.0
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 1.1e-41 174.1 183 49.7
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 4.1e-41 172.2 187 49.7
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 4.1e-41 172.2 187 49.7
TPR.G39105 Trifolium pratense HOM05D003827 ORTHO05D004518 2.1e-40 169.9 199 46.7
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 2.7e-40 169.5 188 52.1
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 1.3e-39 167.2 183 49.7
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 3.0e-39 166.0 195 46.7
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 5.1e-39 165.2 199 44.2
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 5.1e-39 165.2 172 47.1
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 8.6e-39 164.5 201 43.8
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 2.5e-38 162.9 182 47.3
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 2.5e-38 162.9 192 44.3
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 7.3e-38 161.4 182 45.6
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 2.8e-37 159.5 173 46.2
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 2.8e-37 159.5 164 51.2
HanXRQChr06g0177881 Helianthus annuus HOM05D003827 ORTHO05D004518 3.6e-37 159.1 176 50.0
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 6.2e-37 158.3 188 42.6
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 1.4e-36 157.1 181 48.1
Aa31LG10G17280 Aethionema arabicum HOM05D003827 ORTHO05D004518 9.9e-35 151.0 191 43.5
Lalb_Chr01g0019961 Lupinus albus HOM05D003827 ORTHO05D004518 1.7e-34 150.2 174 43.7
ECA248G3364 Erigeron canadensis HOM05D003827 ORTHO05D004518 2.2e-34 149.8 179 45.8
Lsat_1_v5_gn_9_7940 Lactuca sativa HOM05D003827 ORTHO05D004518 3.7e-34 149.1 181 48.6
HanXRQChr15g0466901 Helianthus annuus HOM05D003827 ORTHO05D004518 4.9e-34 148.7 184 44.0
AL5G46290 Arabidopsis lyrata HOM05D003827 ORTHO05D004518 1.1e-33 147.5 168 50.6
Thhalv10005863m.g Eutrema salsugineum HOM05D003827 ORTHO05D004518 2.1e-32 143.3 168 49.4
Carub.0005s3005 Capsella rubella HOM05D003827 ORTHO05D004518 2.3e-31 139.8 187 43.9
Sp5g00120 Schrenkiella parvula HOM05D003827 ORTHO05D004518 3.0e-31 139.4 189 44.4
AT3G63430 Arabidopsis thaliana HOM05D003827 ORTHO05D004518 1.1e-30 137.5 167 47.9
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 3.3e-30 136.0 189 39.2
CARHR291540 Cardamine hirsuta HOM05D003827 ORTHO05D004518 3.6e-29 132.5 167 46.7
SHI10022 Sapria himalayana HOM05D003827 ORTHO05D004518 6.2e-29 131.7 169 42.6
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 1.1e-28 131.0 190 40.0
QL11p007191 Quercus lobata HOM05D000005 ORTHO05D000012 2.4e-28 129.8 132 49.2
ECA247G1386 Erigeron canadensis HOM05D003827 ORTHO05D004518 6.8e-28 128.3 189 46.0
THA.LOC104817570 Tarenaya hassleriana HOM05D003827 ORTHO05D004518 6.4e-26 121.7 171 39.8
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 6.4e-26 121.7 97 55.7
BolC8t51378H Brassica oleracea HOM05D003827 ORTHO05D004518 9.0e-20 101.3 170 42.9
C08p38040 Brassica napus HOM05D003827 ORTHO05D004518 1.2e-19 100.9 170 42.9
BcaC07g40810 Brassica carinata HOM05D003827 ORTHO05D004518 2.6e-19 99.8 170 42.4
Nn3g21249 Nelumbo nucifera HOM05D003827 ORTHO05D004518 2.6e-19 99.8 108 45.4
A09p55100 Brassica napus HOM05D003827 ORTHO05D004518 4.4e-19 99.0 169 42.6
BraA09t40917Z Brassica rapa HOM05D003827 ORTHO05D004518 1.3e-18 97.4 169 42.0
BcaC07g42691 Brassica carinata HOM05D003827 ORTHO05D004518 1.7e-18 97.1 156 44.9
HPP92_020343 Vanilla planifolia HOM05D003827 ORTHO05D004518 5.3e-12 75.5 174 30.5
HPP92_024347 Vanilla planifolia HOM05D003827 ORTHO05D004518 8.4e-10 68.2 191 28.8
SGA_v2.0_scaffold28G11742 Striga asiatica HOM05D001693 ORTHO05D001588 1.4e-09 67.4 204 33.3
Lj4C120T11 Lonicera japonica HOM05D001693 ORTHO05D001588 2.1e-08 63.5 198 28.8
QL02p067404 Quercus lobata HOM05D001693 ORTHO05D001588 3.5e-08 62.8 206 30.1
SEGI_41162 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 6.0e-08 62.0 199 28.6
C09p61530 Brassica napus HOM05D001693 ORTHO05D001588 1.0e-07 61.2 200 30.0
BolC9t58992H Brassica oleracea HOM05D001693 ORTHO05D001588 1.0e-07 61.2 200 30.0
MBI19_g13319_MAGBIO Magnolia biondii HOM05D001693 ORTHO05D001588 1.8e-07 60.5 218 29.8
HanXRQChr16g0522171 Helianthus annuus HOM05D001693 ORTHO05D001588 2.3e-07 60.1 190 28.9
SalBow1G3500 Salvia bowleyana HOM05D001693 ORTHO05D001588 2.3e-07 60.1 202 28.2
SalBow1G8326 Salvia bowleyana HOM05D001693 ORTHO05D001588 2.3e-07 60.1 168 32.7
HanXRQChr17g0546021 Helianthus annuus HOM05D001693 ORTHO05D001588 3.0e-07 59.7 185 28.1
SEGI_17249 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 3.0e-07 59.7 181 29.8
Cpa.g.sc14.190 Carica papaya HOM05D001693 ORTHO05D001588 3.9e-07 59.3 209 29.7
MELO3C002039.2 Cucumis melo HOM05D001693 ORTHO05D001588 3.9e-07 59.3 214 30.4
Hma1.2p1_0029F.1_g018050 Hydrangea macrophylla HOM05D001693 ORTHO05D001588 3.9e-07 59.3 190 31.6
ClCG04G011700 Citrullus lanatus HOM05D001693 ORTHO05D001588 5.1e-07 58.9 213 30.0
ECA232G0439 Erigeron canadensis HOM05D001693 ORTHO05D001588 8.7e-07 58.2 211 28.9
AL1G31060 Arabidopsis lyrata HOM05D001693 ORTHO05D001588 1.5e-06 57.4 199 27.6
Rhsim12G0149000 Rhododendron simsii HOM05D001693 ORTHO05D001588 1.9e-06 57.0 215 27.0
Thhalv10018061m.g Eutrema salsugineum HOM05D001693 ORTHO05D001588 2.5e-06 56.6 225 28.9
SalBow5G2804 Salvia bowleyana HOM05D001693 ORTHO05D001588 2.5e-06 56.6 178 33.7
Zm00001eb200650 Zea mays HOM05D003827 ORTHO05D004518 2.5e-06 56.6 176 26.1
Oeu002272.1 Olea europaea HOM05D003827 ORTHO05D004518 3.3e-06 56.2 173 29.5
A10p23390 Brassica napus HOM05D001693 ORTHO05D001588 4.3e-06 55.8 227 28.2
BraA10t44407Z Brassica rapa HOM05D001693 ORTHO05D001588 4.3e-06 55.8 227 28.2
HPP92_019468 Vanilla planifolia HOM05D001693 ORTHO05D001588 7.4e-06 55.1 211 26.5
Aa31LG4G4480 Aethionema arabicum HOM05D001693 ORTHO05D001588 9.6e-06 54.7 218 28.4


User provided reference genes

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