Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039883 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 1.1e-122 445.3 888 100.0
CSS0019582 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 4.4e-119 433.3 888 99.2
Hma1.2p1_0133F.1_g061410 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 4.9e-54 217.2 134 78.4
Hma1.2p1_1825F.1_g304380 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 1.4e-53 215.7 134 77.6
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 1.6e-52 212.2 135 79.3
vmacro12101 Vaccinium macrocarpon HOM05D003210 ORTHO05D000001 6.0e-52 210.3 135 77.8
Dinv24763 Davidia involucrata HOM05D003210 ORTHO05D000001 1.0e-51 209.5 228 74.6
TAR629G0622 Trochodendron aralioides HOM05D003210 ORTHO05D000001 1.0e-51 209.5 134 76.1
GSVIVG01030055001 Vitis vinifera HOM05D003210 ORTHO05D000001 1.8e-51 208.8 133 75.9
TWI18G1117 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 7.4e-50 203.4 134 70.1
Atru.chr6.3361 Acer truncatum HOM05D003210 ORTHO05D000001 1.2e-47 196.1 135 68.1
Nn1g03235 Nelumbo nucifera HOM05D003210 ORTHO05D000001 5.9e-47 193.7 134 70.1
MSTRG.6643 Avicennia marina HOM05D003210 ORTHO05D000001 2.2e-46 191.8 130 70.8
QL04p021900 Quercus lobata HOM05D003210 ORTHO05D000001 2.2e-46 191.8 221 71.0
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 2.9e-46 191.4 134 69.4
Oeu040467.2 Olea europaea HOM05D003210 ORTHO05D000001 3.8e-46 191.0 131 70.2
MD09G1122300 Malus domestica HOM05D003210 ORTHO05D000001 1.9e-45 188.7 134 67.2
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 1.9e-45 188.7 134 67.9
SalBow7G0399 Salvia bowleyana HOM05D003210 ORTHO05D000001 1.6e-44 185.7 130 70.0
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 3.6e-44 184.5 219 45.2
Manes.12G061200 Manihot esculenta HOM05D003210 ORTHO05D000001 4.6e-44 184.1 136 63.2
Eucgr.K00651 Eucalyptus grandis HOM05D003210 ORTHO05D000001 7.9e-44 183.3 134 64.9
CiPaw.12G072400 Carya illinoinensis HOM05D003210 ORTHO05D000001 1.4e-43 182.6 219 67.6
MELO3C024111.2 Cucumis melo HOM05D003210 ORTHO05D000001 1.4e-43 182.6 134 64.9
Ciclev10014182m.g Citrus clementina HOM05D003210 ORTHO05D000001 3.9e-43 181.0 216 63.4
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 1.5e-42 179.1 132 65.2
SGA_v2.0_scaffold181G39678 Striga asiatica HOM05D003210 ORTHO05D000001 2.5e-42 178.3 125 67.2
CAN.G1397.6 Capsicum annuum HOM05D003210 ORTHO05D000001 4.3e-42 177.6 130 65.4
CsaV3_7G023730 Cucumis sativus L. HOM05D003210 ORTHO05D000001 9.7e-42 176.4 134 63.4
Sed0013166 Sechium edule HOM05D003210 ORTHO05D000001 2.2e-41 175.3 134 64.2
Solyc07g047820.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 2.2e-41 175.3 149 59.1
Sopen07g024250 Solanum pennellii HOM05D003210 ORTHO05D000001 2.2e-41 175.3 148 59.5
Cfa012658 Carpinus fangiana HOM05D003210 ORTHO05D000001 4.8e-41 174.1 132 62.1
CsaV3_7G021590 Cucumis sativus L. HOM05D003210 ORTHO05D000001 4.8e-41 174.1 135 63.0
Nitab4.5_0011940g0010 Nicotiana tabacum HOM05D003210 ORTHO05D000001 6.3e-41 173.7 155 57.4
Peaxi162Scf00776g00227 Petunia axillaris HOM05D003210 ORTHO05D000001 2.4e-40 171.8 154 57.8
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 3.4e-39 167.9 134 60.4
Haze_07989 Corylus avellana HOM05D003210 ORTHO05D000001 4.5e-39 167.5 125 61.6
RcHm_v2.0_Chr2g0156641 Rosa chinensis HOM05D003210 ORTHO05D000001 1.3e-38 166.0 134 59.0
FAN14G2019 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.4e-37 162.5 134 56.0
PGR142G4479 Punica granatum HOM05D003210 ORTHO05D000001 1.9e-37 162.2 221 65.6
unitig_748.g8367 Utricularia gibba HOM05D003210 ORTHO05D000001 1.9e-37 162.2 131 57.3
FvH4_6g41080 Fragaria vesca HOM05D003210 ORTHO05D000001 5.5e-37 160.6 132 56.1
PSO541G3269 Papaver somniferum HOM05D003210 ORTHO05D000001 1.2e-36 159.5 135 60.7
Nitab4.5_0000441g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 2.7e-36 158.3 206 69.9
PSO675G6229 Papaver somniferum HOM05D003210 ORTHO05D000001 7.9e-36 156.8 135 60.0
MBI19_g25583_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 1.1e-34 152.9 219 63.9
PGSC0003DMG400006128 Solanum tuberosum HOM05D003210 ORTHO05D000001 2.6e-34 151.8 206 67.0
Cc04_g11530 Coffea canephora HOM05D003210 ORTHO05D000001 7.4e-34 150.2 207 68.1
AUR62015034 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.7e-33 149.1 134 57.5
FAN05G1838 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.7e-33 149.1 118 56.8
HanXRQChr03g0075201 Helianthus annuus HOM05D003210 ORTHO05D000001 1.7e-33 149.1 134 49.3
FAN02G2842 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.2e-33 148.7 118 57.6
MELO3C013188.2 Cucumis melo HOM05D003210 ORTHO05D000001 3.7e-33 147.9 218 57.3
Dinv24770 Davidia involucrata HOM05D003210 ORTHO05D000001 4.8e-33 147.5 207 58.5
FAN09G1124 Fragaria x ananassa HOM05D003210 ORTHO05D000001 4.1e-32 144.4 118 55.9
Dinv33235 Davidia involucrata HOM05D003210 ORTHO05D000001 1.2e-31 142.9 214 66.4
SHI10143 Sapria himalayana HOM05D003210 ORTHO05D000001 1.2e-31 142.9 136 52.2
AUR62017491 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.5e-31 142.5 133 56.4
ATR0712G112 Amborella trichopoda HOM05D003210 ORTHO05D000001 5.0e-30 137.5 133 48.9
Migut.M00034 Erythranthe guttata HOM05D003210 ORTHO05D000001 5.0e-30 137.5 212 57.5
DCAR_012908 Daucus carota HOM05D003210 ORTHO05D000001 4.2e-29 134.4 214 60.3
DCAR_012925 Daucus carota HOM05D003210 ORTHO05D000001 4.2e-29 134.4 214 60.3
Ah.15g091280 Amaranthus hybridus HOM05D003210 ORTHO05D000001 8.8e-27 126.7 107 56.1
Hma1.2p1_0133F.1_g061420 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 1.1e-26 126.3 82 76.8
HPP92_009567 Vanilla planifolia HOM05D003210 ORTHO05D000001 7.4e-26 123.6 133 45.9
HanXRQChr13g0389381 Helianthus annuus HOM05D003210 ORTHO05D000001 3.1e-24 118.2 221 57.9
COL.COLO4_08492 Corchorus olitorius HOM05D003210 ORTHO05D000001 1.6e-23 115.9 89 64.0
TAR625G1193 Trochodendron aralioides HOM05D003210 ORTHO05D000001 1.5e-18 99.4 136 36.8
ATR0665G178 Amborella trichopoda HOM05D003210 ORTHO05D000001 3.4e-18 98.2 128 39.1
SEGI_31076 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 9.7e-18 96.7 137 37.2
Ciclev10018770m.g Citrus clementina HOM05D003210 ORTHO05D000001 2.2e-17 95.5 135 34.1
Lsat_1_v5_gn_9_104601 Lactuca sativa HOM05D003210 ORTHO05D000001 2.8e-17 95.1 75 58.7
SEGI_11288 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 3.7e-17 94.7 137 35.0
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 3.7e-17 94.7 132 35.6
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 4.1e-16 91.3 133 34.6
Sc16g0000610 Simmondsia chinensis HOM05D003210 ORTHO05D000001 4.1e-16 91.3 138 37.0
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 9.1e-16 90.1 136 35.3
CDE02G0711 Ceratophyllum demersum HOM05D003210 ORTHO05D000001 1.0e-14 86.7 203 56.2
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 1.0e-14 86.7 131 35.1
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 2.2e-14 85.5 136 36.0
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 2.9e-14 85.1 138 32.6
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 3.8e-14 84.7 136 35.3
CANSAT01G1059 Cannabis sativa HOM05D003210 ORTHO05D000001 6.5e-14 84.0 130 33.8
CiPaw.08G142200 Carya illinoinensis HOM05D003210 ORTHO05D000001 6.5e-14 84.0 132 35.6
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 8.5e-14 83.6 136 35.3
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 8.5e-14 83.6 170 27.6
MBI16_g31256_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 1.5e-13 82.8 138 29.0
CDE02G4398 Ceratophyllum demersum HOM05D003210 ORTHO05D000001 1.9e-13 82.4 132 29.5
Hund03005 Selenicereus undatus HOM05D003210 ORTHO05D000001 1.9e-13 82.4 137 35.0
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 4.2e-13 81.3 134 34.3
COL.COLO4_27373 Corchorus olitorius HOM05D003210 ORTHO05D000001 7.2e-13 80.5 134 31.3
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 1.2e-12 79.7 142 31.7
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.2e-12 79.7 174 28.2
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 1.6e-12 79.3 190 36.3
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 2.1e-12 79.0 127 30.7
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.1e-12 79.0 170 27.1
THA.LOC104808438 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 2.7e-12 78.6 138 30.4
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 3.6e-12 78.2 206 27.7
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 3.6e-12 78.2 170 27.1
FAN26G1074 Fragaria x ananassa HOM05D003210 ORTHO05D000001 4.7e-12 77.8 170 26.5
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 4.7e-12 77.8 170 26.5
QL12p037893 Quercus lobata HOM05D003210 ORTHO05D000001 4.7e-12 77.8 139 33.1
Duzib264G1117 Durio zibethinus HOM05D003210 ORTHO05D000001 8.0e-12 77.0 134 31.3
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 1.0e-11 76.6 170 26.5
FAN28G0230 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.0e-11 76.6 170 26.5
MD03G1170600 Malus domestica HOM05D003210 ORTHO05D000001 1.0e-11 76.6 135 33.3
Sed0026111 Sechium edule HOM05D003210 ORTHO05D000001 1.0e-11 76.6 131 31.3
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 1.0e-11 76.6 132 32.6
ClCG08G009320 Citrullus lanatus HOM05D003210 ORTHO05D000001 1.8e-11 75.9 131 31.3
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 1.8e-11 75.9 135 28.1
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 2.3e-11 75.5 174 38.5
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 2.3e-11 75.5 134 31.3
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 3.0e-11 75.1 131 31.3
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 4.0e-11 74.7 136 28.7
Aqoxy4G02220 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 6.8e-11 73.9 219 53.0
ECA240G1833 Erigeron canadensis HOM05D003210 ORTHO05D000001 1.2e-10 73.2 203 54.2
Oeu017113.2 Olea europaea HOM05D000258 ORTHO05D000001 1.2e-10 73.2 133 30.8
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 1.2e-10 73.2 132 31.8
FvH4_1g06430 Fragaria vesca HOM05D003210 ORTHO05D000001 1.5e-10 72.8 170 25.9
FAN19G0968 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.5e-10 72.8 170 25.9
Ah.03g139830 Amaranthus hybridus HOM05D003210 ORTHO05D000001 2.0e-10 72.4 131 32.1
ATR0661G545 Amborella trichopoda HOM05D008810 ORTHO05D010971 2.0e-10 72.4 131 30.5
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 2.0e-10 72.4 136 29.4
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 2.0e-10 72.4 134 28.4
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 2.6e-10 72.0 131 30.5
Nitab4.5_0000574g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 2.6e-10 72.0 178 43.3
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 3.4e-10 71.6 170 24.7
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 4.4e-10 71.2 140 31.4
TWI75G1111 Tripterygium wilfordii HOM05D008810 ORTHO05D010971 4.4e-10 71.2 134 32.1
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 5.7e-10 70.9 139 30.9
TPR.G36733 Trifolium pratense HOM05D003210 ORTHO05D000001 5.7e-10 70.9 134 29.1
Nitab4.5_0002364g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 9.8e-10 70.1 178 42.1
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 1.7e-09 69.3 134 27.6
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 1.7e-09 69.3 146 30.1
AL3G14030 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 3.7e-09 68.2 126 28.6
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 3.7e-09 68.2 136 30.1
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 3.7e-09 68.2 133 27.8
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 3.7e-09 68.2 133 27.8
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 3.7e-09 68.2 133 27.8
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 3.7e-09 68.2 138 26.8
PSO541G2059 Papaver somniferum HOM05D003210 ORTHO05D000001 3.7e-09 68.2 135 32.6
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 4.8e-09 67.8 211 25.1
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 6.3e-09 67.4 138 26.8
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 6.3e-09 67.4 174 24.7
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 6.3e-09 67.4 174 24.7
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 8.3e-09 67.0 133 31.6
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 8.3e-09 67.0 136 28.7
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 2.4e-08 65.5 142 26.1
BraA06t26165Z Brassica rapa HOM05D003210 ORTHO05D000001 3.1e-08 65.1 130 26.9
FAN20G1808 Fragaria x ananassa HOM05D003210 ORTHO05D000001 3.1e-08 65.1 174 25.3
Rhsim13G0050100 Rhododendron simsii HOM05D008810 ORTHO05D010971 3.1e-08 65.1 135 31.9
A06p32400 Brassica napus HOM05D003210 ORTHO05D000001 7.0e-08 63.9 130 26.9
Ca_25227_v3 Cicer arietinum L. HOM05D003210 ORTHO05D000001 7.0e-08 63.9 129 29.5
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 7.0e-08 63.9 178 38.2
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 7.0e-08 63.9 178 36.0
Lj1P792T34 Lonicera japonica HOM05D003210 ORTHO05D000001 9.1e-08 63.5 39 71.8
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 9.1e-08 63.5 140 27.1
Nn1g08193 Nelumbo nucifera HOM05D008810 ORTHO05D010971 1.2e-07 63.2 134 32.8
Cc03_g12590 Coffea canephora HOM05D003210 ORTHO05D000001 1.6e-07 62.8 166 47.0
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 1.6e-07 62.8 138 24.6
vmacro02795 Vaccinium macrocarpon HOM05D008810 ORTHO05D010971 1.6e-07 62.8 134 31.3
Cpa.g.sc10.84 Carica papaya HOM05D003210 ORTHO05D000001 2.0e-07 62.4 174 32.2
HanXRQChr13g0389361 Helianthus annuus HOM05D000003 ORTHO05D000007 2.0e-07 62.4 57 52.6
CSS0000965 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 2.7e-07 62.0 174 40.2
Lj3C22T6 Lonicera japonica HOM05D003210 ORTHO05D000001 2.7e-07 62.0 135 26.7
Lalb_Chr09g0325941 Lupinus albus HOM05D003210 ORTHO05D000001 2.7e-07 62.0 131 30.5
Psat3g169880 Pisum sativum HOM05D003210 ORTHO05D000001 2.7e-07 62.0 138 26.8
Carub.0002s2422 Capsella rubella HOM05D003210 ORTHO05D000001 3.5e-07 61.6 132 26.5
CARHR279540 Cardamine hirsuta HOM05D003210 ORTHO05D000001 3.5e-07 61.6 143 25.2
Medtr5g031740 Medicago truncatula HOM05D003210 ORTHO05D000001 1.0e-06 60.1 135 26.7
Lj2g0010731 Lotus japonicus HOM05D003210 ORTHO05D000001 1.3e-06 59.7 131 27.5
Os02g0582300 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 1.3e-06 59.7 153 24.8
PGSC0003DMG400023572 Solanum tuberosum HOM05D003210 ORTHO05D000001 1.7e-06 59.3 134 26.9
Zm00001eb118600 Zea mays HOM05D003210 ORTHO05D000001 2.3e-06 58.9 139 28.1
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 2.9e-06 58.5 140 26.4
Peaxi162Scf00370g00062 Petunia axillaris HOM05D003210 ORTHO05D000001 2.9e-06 58.5 180 33.9
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 3.8e-06 58.2 141 24.8
AT1G77340 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 5.0e-06 57.8 127 26.0


User provided reference genes

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