Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039865 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D024698 3.4e-48 194.5 89 100.0
Actinidia22891 Actinidia chinensis HOM05D001842 ORTHO05D001849 3.3e-14 81.6 70 58.6
vmacro20625 Vaccinium macrocarpon HOM05D001842 ORTHO05D001849 7.2e-14 80.5 70 55.7
Manes.01G155900 Manihot esculenta HOM05D001842 ORTHO05D001849 9.5e-14 80.1 66 59.1
Aqoxy6G01606 Aquilegia oxysepala HOM05D001842 ORTHO05D001849 1.2e-13 79.7 70 55.7
CSS0024804 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 1.6e-13 79.3 70 55.7
CSS0030981 Camellia sinensis var. sinensis HOM05D001842 ORTHO05D001849 1.6e-13 79.3 70 55.7
Cpa.g.sc6.364 Carica papaya HOM05D001842 ORTHO05D001849 2.8e-13 78.6 70 55.7
Nitab4.5_0001467g0060 Nicotiana tabacum HOM05D001842 ORTHO05D001849 2.8e-13 78.6 70 55.7
Nitab4.5_0007782g0070 Nicotiana tabacum HOM05D001842 ORTHO05D001849 2.8e-13 78.6 70 55.7
PSO541G1162 Papaver somniferum HOM05D001842 ORTHO05D001849 2.8e-13 78.6 73 53.4
Atru.chr3.124 Acer truncatum HOM05D001842 ORTHO05D001849 3.6e-13 78.2 70 54.3
PSO675G7298 Papaver somniferum HOM05D001842 ORTHO05D001849 3.6e-13 78.2 73 52.1
Sc05g0006840 Simmondsia chinensis HOM05D001842 ORTHO05D001849 3.6e-13 78.2 70 54.3
TAR376G0454 Trochodendron aralioides HOM05D001842 ORTHO05D001849 3.6e-13 78.2 73 54.8
QL11p056280 Quercus lobata HOM05D001842 ORTHO05D001849 6.1e-13 77.4 70 54.3
TWI09G0475 Tripterygium wilfordii HOM05D001842 ORTHO05D001849 6.1e-13 77.4 66 57.6
Haze_02003 Corylus avellana HOM05D001842 ORTHO05D001849 8.0e-13 77.0 66 56.1
Gohir.A07G171600 Gossypium hirsutum HOM05D001842 ORTHO05D001849 8.0e-13 77.0 70 54.3
Gohir.D07G178300 Gossypium hirsutum HOM05D001842 ORTHO05D001849 8.0e-13 77.0 70 54.3
Gorai.001G199400 Gossypium raimondii HOM05D001842 ORTHO05D001849 8.0e-13 77.0 70 54.3
HanXRQChr14g0442891 Helianthus annuus HOM05D001842 ORTHO05D001849 1.0e-12 76.6 70 52.9
Lsat_1_v5_gn_8_112480 Lactuca sativa HOM05D001842 ORTHO05D001849 1.0e-12 76.6 70 54.3
CiPaw.06G115800 Carya illinoinensis HOM05D001842 ORTHO05D001849 1.4e-12 76.3 70 52.9
MD10G1140800 Malus domestica HOM05D001842 ORTHO05D001849 1.4e-12 76.3 70 55.7
AT1G21630 Arabidopsis thaliana HOM05D001842 ORTHO05D001849 1.8e-12 75.9 70 52.9
ECA238G3849 Erigeron canadensis HOM05D001842 ORTHO05D001849 1.8e-12 75.9 70 52.9
Ah.01g017570 Amaranthus hybridus HOM05D001842 ORTHO05D001849 3.0e-12 75.1 72 50.0
CAN.G1238.17 Capsicum annuum HOM05D001842 ORTHO05D001849 3.0e-12 75.1 70 54.3
Nn5g30998 Nelumbo nucifera HOM05D001842 ORTHO05D001849 3.0e-12 75.1 73 52.1
PGR042G2901 Punica granatum HOM05D001842 ORTHO05D001849 3.0e-12 75.1 70 55.7
Rhsim10G0194400 Rhododendron simsii HOM05D001842 ORTHO05D001849 3.0e-12 75.1 64 54.7
Solyc02g082540.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 3.0e-12 75.1 70 54.3
Sopen02g027220 Solanum pennellii HOM05D001842 ORTHO05D001849 3.0e-12 75.1 70 54.3
BcaB07g32156 Brassica carinata HOM05D001842 ORTHO05D001849 4.0e-12 74.7 70 52.9
A06p17700 Brassica napus HOM05D001842 ORTHO05D001849 4.0e-12 74.7 70 52.9
BraA06t24862Z Brassica rapa HOM05D001842 ORTHO05D001849 4.0e-12 74.7 70 52.9
CiPaw.05G092800 Carya illinoinensis HOM05D001842 ORTHO05D001849 4.0e-12 74.7 70 52.9
Ciclev10024733m.g Citrus clementina HOM05D001842 ORTHO05D001849 4.0e-12 74.7 70 52.9
Hma1.2p1_0085F.1_g044600 Hydrangea macrophylla HOM05D001842 ORTHO05D001849 4.0e-12 74.7 70 54.3
Nn6g31683 Nelumbo nucifera HOM05D001842 ORTHO05D001849 4.0e-12 74.7 73 52.1
AL1G34770 Arabidopsis lyrata HOM05D001842 ORTHO05D001849 5.2e-12 74.3 70 51.4
MD05G1135500 Malus domestica HOM05D001842 ORTHO05D001849 5.2e-12 74.3 70 54.3
Prupe.8G179600 Prunus persica HOM05D001842 ORTHO05D001849 5.2e-12 74.3 70 54.3
BolC8t49733H Brassica oleracea HOM05D001842 ORTHO05D001849 6.8e-12 73.9 70 51.4
Cc07_g11940 Coffea canephora HOM05D001842 ORTHO05D001849 6.8e-12 73.9 70 52.9
Dinv28318 Davidia involucrata HOM05D001842 ORTHO05D001849 6.8e-12 73.9 70 51.4
FAN27G0714 Fragaria x ananassa HOM05D001842 ORTHO05D001849 6.8e-12 73.9 66 56.1
TWI53G0649 Tripterygium wilfordii HOM05D001842 ORTHO05D001849 6.8e-12 73.9 66 53.0
AUR62010172 Chenopodium quinoa HOM05D001842 ORTHO05D001849 8.9e-12 73.6 70 50.0
AUR62013173 Chenopodium quinoa HOM05D001842 ORTHO05D001849 8.9e-12 73.6 70 50.0
HanXRQChr09g0259431 Helianthus annuus HOM05D001842 ORTHO05D001849 8.9e-12 73.6 70 54.3
MBI05_g33293_MAGBIO Magnolia biondii HOM05D001842 ORTHO05D001849 8.9e-12 73.6 70 52.9
Sed0008264 Sechium edule HOM05D001842 ORTHO05D001849 1.2e-11 73.2 66 54.5
Thecc.01G004600 Theobroma cacao HOM05D001842 ORTHO05D001849 1.2e-11 73.2 70 54.3
Aa31LG7G5600 Aethionema arabicum HOM05D001842 ORTHO05D001849 1.5e-11 72.8 70 51.4
BcaC05g26080 Brassica carinata HOM05D001842 ORTHO05D001849 1.5e-11 72.8 70 51.4
BcaC06g34897 Brassica carinata HOM05D001842 ORTHO05D001849 1.5e-11 72.8 70 50.0
C07p22040 Brassica napus HOM05D001842 ORTHO05D001849 1.5e-11 72.8 70 50.0
BolC7t42734H Brassica oleracea HOM05D001842 ORTHO05D001849 1.5e-11 72.8 70 50.0
MELO3C013251.2 Cucumis melo HOM05D001842 ORTHO05D001849 1.5e-11 72.8 66 54.5
Duzib264G1083 Durio zibethinus HOM05D001842 ORTHO05D001849 1.5e-11 72.8 70 52.9
Hund06365 Selenicereus undatus HOM05D001842 ORTHO05D001849 1.5e-11 72.8 70 52.9
TAR628G0545 Trochodendron aralioides HOM05D001842 ORTHO05D001849 1.5e-11 72.8 73 52.1
BcaB03g14261 Brassica carinata HOM05D001842 ORTHO05D001849 2.0e-11 72.4 70 51.4
C08p20960 Brassica napus HOM05D001842 ORTHO05D001849 2.0e-11 72.4 70 50.0
FvH4_2g16750 Fragaria vesca HOM05D001842 ORTHO05D001849 2.0e-11 72.4 66 54.5
FAN24G0597 Fragaria x ananassa HOM05D001842 ORTHO05D001849 2.0e-11 72.4 66 54.5
A07p14990 Brassica napus HOM05D001842 ORTHO05D001849 2.6e-11 72.0 70 50.0
BraA07t29245Z Brassica rapa HOM05D001842 ORTHO05D001849 2.6e-11 72.0 70 50.0
ClCG02G003430 Citrullus lanatus HOM05D001842 ORTHO05D001849 2.6e-11 72.0 66 53.0
CsaV3_7G001880 Cucumis sativus L. HOM05D001842 ORTHO05D001849 2.6e-11 72.0 66 53.0
Oeu039712.1 Olea europaea HOM05D001842 ORTHO05D001849 2.6e-11 72.0 70 51.4
THA.LOC104812085 Tarenaya hassleriana HOM05D001842 ORTHO05D001849 2.6e-11 72.0 70 51.4
CARHR021980 Cardamine hirsuta HOM05D001842 ORTHO05D001849 3.4e-11 71.6 70 50.0
Cfa005365 Carpinus fangiana HOM05D001842 ORTHO05D001849 3.4e-11 71.6 66 50.0
Lsat_1_v5_gn_2_73740 Lactuca sativa HOM05D001842 ORTHO05D001849 3.4e-11 71.6 66 53.0
Lj2C501G4 Lonicera japonica HOM05D001842 ORTHO05D001849 3.4e-11 71.6 65 55.4
Peaxi162Scf00580g00016 Petunia axillaris HOM05D001842 ORTHO05D001849 3.4e-11 71.6 70 50.0
C05p20600 Brassica napus HOM05D001842 ORTHO05D001849 4.4e-11 71.2 70 51.4
BolC5t30758H Brassica oleracea HOM05D001842 ORTHO05D001849 4.4e-11 71.2 70 51.4
Carub.0001s2105 Capsella rubella HOM05D001842 ORTHO05D001849 5.7e-11 70.9 70 50.0
COL.COLO4_22557 Corchorus olitorius HOM05D001842 ORTHO05D001849 5.7e-11 70.9 70 51.4
Glyma.02G311333 Glycine max HOM05D001842 ORTHO05D001849 5.7e-11 70.9 70 48.6
Nitab4.5_0000467g0080 Nicotiana tabacum HOM05D001842 ORTHO05D001849 5.7e-11 70.9 62 54.8
Solyc02g038812.1 Solanum lycopersicum HOM05D001842 ORTHO05D001849 5.7e-11 70.9 70 50.0
Sopen02g012560 Solanum pennellii HOM05D001842 ORTHO05D001849 5.7e-11 70.9 70 50.0
Dinv40195 Davidia involucrata HOM05D001842 ORTHO05D001849 7.5e-11 70.5 69 52.2
Potri.005G102200 Populus trichocarpa HOM05D001842 ORTHO05D001849 7.5e-11 70.5 70 52.9
SalBow5G1010 Salvia bowleyana HOM05D001842 ORTHO05D001849 7.5e-11 70.5 70 50.0
Nitab4.5_0001365g0070 Nicotiana tabacum HOM05D001842 ORTHO05D001849 9.8e-11 70.1 62 54.8
Sabra05G0084600 Salix brachista HOM05D001842 ORTHO05D001849 9.8e-11 70.1 70 52.9
MD05G1138200 Malus domestica HOM05D001842 ORTHO05D001849 1.3e-10 69.7 62 56.5
Oeu012542.1 Olea europaea HOM05D001842 ORTHO05D001849 1.3e-10 69.7 70 50.0
Phvul.008G292100 Phaseolus vulgaris HOM05D001842 ORTHO05D001849 1.3e-10 69.7 70 48.6
Sp1g19150 Schrenkiella parvula HOM05D001842 ORTHO05D001849 1.3e-10 69.7 70 50.0
GSVIVG01023872001 Vitis vinifera HOM05D001842 ORTHO05D001849 1.3e-10 69.7 73 47.9
CAN.G328.10 Capsicum annuum HOM05D001842 ORTHO05D001849 1.7e-10 69.3 70 48.6
DCAR_016693 Daucus carota HOM05D001842 ORTHO05D001849 1.7e-10 69.3 61 54.1
Duzib147G0584 Durio zibethinus HOM05D001842 ORTHO05D001849 1.7e-10 69.3 70 48.6
Eucgr.G01875 Eucalyptus grandis HOM05D001842 ORTHO05D001849 1.7e-10 69.3 70 50.0
Glyma.14G001200 Glycine max HOM05D001842 ORTHO05D001849 1.7e-10 69.3 70 47.1
Lalb_Chr04g0246921 Lupinus albus HOM05D001842 ORTHO05D001849 2.2e-10 68.9 70 47.1
Potri.007G063200 Populus trichocarpa HOM05D001842 ORTHO05D001849 2.2e-10 68.9 66 53.0
Sed0009695 Sechium edule HOM05D001842 ORTHO05D001849 2.2e-10 68.9 66 53.0
SGA_v2.0_scaffold229G43301 Striga asiatica HOM05D001842 ORTHO05D001849 2.2e-10 68.9 70 50.0
arahy.Tifrunner.gnm1.ann1.1FV09I Arachis hypogaea HOM05D001842 ORTHO05D001849 2.8e-10 68.6 69 47.8
arahy.Tifrunner.gnm1.ann1.649J27 Arachis hypogaea HOM05D001842 ORTHO05D001849 2.8e-10 68.6 69 47.8
arahy.Tifrunner.gnm1.ann1.84FHQN Arachis hypogaea HOM05D001842 ORTHO05D001849 2.8e-10 68.6 70 47.1
arahy.Tifrunner.gnm1.ann1.RT0S28 Arachis hypogaea HOM05D001842 ORTHO05D001849 2.8e-10 68.6 70 47.1
Thhalv10006584m.g Eutrema salsugineum HOM05D001842 ORTHO05D001849 2.8e-10 68.6 70 50.0
VMungo0647G1618 Vigna mungo HOM05D001842 ORTHO05D001849 2.8e-10 68.6 70 47.1
MSTRG.3637 Avicennia marina HOM05D001842 ORTHO05D001849 3.7e-10 68.2 70 50.0
BraA08t34820Z Brassica rapa HOM05D001842 ORTHO05D001849 3.7e-10 68.2 70 50.0
CSS0003960 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D024698 4.9e-10 67.8 64 56.2
MBI08_g37961_MAGBIO Magnolia biondii HOM05D001842 ORTHO05D001849 6.3e-10 67.4 73 46.6
A08p28890 Brassica napus HOM05D001842 ORTHO05D001849 8.3e-10 67.0 70 50.0
RcHm_v2.0_Chr6g0280871 Rosa chinensis HOM05D001842 ORTHO05D001849 1.1e-09 66.6 70 51.4
THA.LOC104813678 Tarenaya hassleriana HOM05D001842 ORTHO05D001849 1.1e-09 66.6 70 48.6
Sed0023090 Sechium edule HOM05D001842 ORTHO05D001849 1.4e-09 66.2 62 53.2
SGA_v2.0_scaffold45G17080 Striga asiatica HOM05D001842 ORTHO05D001849 1.4e-09 66.2 61 54.1
MSTRG.15602 Avicennia marina HOM05D001842 ORTHO05D001849 1.8e-09 65.9 70 50.0
unitig_88.g27776 Utricularia gibba HOM05D001842 ORTHO05D001849 1.8e-09 65.9 70 45.7
Ca_06502_v3 Cicer arietinum L. HOM05D001842 ORTHO05D001849 2.4e-09 65.5 70 45.7
LjContig00081g0008818 Lotus japonicus HOM05D001842 ORTHO05D001849 2.4e-09 65.5 70 45.7
Medtr5g099170 Medicago truncatula HOM05D001842 ORTHO05D001849 4.1e-09 64.7 70 45.7
TPR.G18637 Trifolium pratense HOM05D001842 ORTHO05D001849 5.4e-09 64.3 70 45.7
COL.COLO4_07475 Corchorus olitorius HOM05D001842 ORTHO05D001849 7.0e-09 63.9 66 48.5
Psat2g000840 Pisum sativum HOM05D001842 ORTHO05D001849 7.0e-09 63.9 70 45.7
Actinidia17353 Actinidia chinensis HOM05D001842 ORTHO05D001849 9.2e-09 63.5 62 51.6
CiPaw.08G075300 Carya illinoinensis HOM05D001842 ORTHO05D001849 7.8e-08 60.5 73 42.5
Migut.H02211 Erythranthe guttata HOM05D001842 ORTHO05D001849 1.3e-07 59.7 70 44.3
Manes.05G124400 Manihot esculenta HOM05D001842 ORTHO05D001849 1.7e-07 59.3 69 43.5
Sabra05G0196200 Salix brachista HOM05D001842 ORTHO05D001849 2.3e-07 58.9 82 41.5
Aa31LG4G7350 Aethionema arabicum HOM05D001245 ORTHO05D004475 2.9e-07 58.5 68 45.6
Manes.18G003700 Manihot esculenta HOM05D001842 ORTHO05D001849 5.0e-07 57.8 71 42.3
TWI56G1388 Tripterygium wilfordii HOM05D001842 ORTHO05D001849 5.0e-07 57.8 73 41.1
Cfa014111 Carpinus fangiana HOM05D001842 ORTHO05D001849 6.6e-07 57.4 69 43.5
Eucgr.F01786 Eucalyptus grandis HOM05D001842 ORTHO05D001849 8.6e-07 57.0 35 65.7
CDE02G2542 Ceratophyllum demersum HOM05D001842 ORTHO05D001849 1.1e-06 56.6 67 41.8
GSVIVG01013392001 Vitis vinifera HOM05D001842 ORTHO05D001849 1.5e-06 56.2 73 38.4
CSS0001048 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D024698 1.9e-06 55.8 26 84.6
CSS0024056 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D110517 1.9e-06 55.8 57 52.6
FAN04G2289 Fragaria x ananassa HOM05D001842 ORTHO05D001849 1.9e-06 55.8 28 82.1
FAN08G1553 Fragaria x ananassa HOM05D001842 ORTHO05D001849 1.9e-06 55.8 28 82.1
FAN13G2297 Fragaria x ananassa HOM05D001842 ORTHO05D001849 1.9e-06 55.8 28 82.1
Potri.002G008600 Populus trichocarpa HOM05D001842 ORTHO05D001849 1.9e-06 55.8 35 65.7
Sabra02G0006400 Salix brachista HOM05D001842 ORTHO05D001849 1.9e-06 55.8 35 65.7
HPP92_020703 Vanilla planifolia HOM05D001842 ORTHO05D001849 1.9e-06 55.8 35 62.9
HPP92_026381 Vanilla planifolia HOM05D001842 ORTHO05D001849 1.9e-06 55.8 35 62.9
MD06G1007400 Malus domestica HOM05D001842 ORTHO05D001849 2.5e-06 55.5 28 78.6
ATR0807G019 Amborella trichopoda HOM05D001842 ORTHO05D001849 3.3e-06 55.1 35 62.9
arahy.Tifrunner.gnm1.ann1.7S2LJQ Arachis hypogaea HOM05D002852 ORTHO05D026880 3.3e-06 55.1 40 60.0
CSS0030508 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D024698 3.3e-06 55.1 23 91.3
CSS0044783 Camellia sinensis var. sinensis HOM05D020153 ORTHO05D024698 3.3e-06 55.1 23 91.3
CDE04G3412 Ceratophyllum demersum HOM05D001842 ORTHO05D001849 4.3e-06 54.7 68 39.7
QL02p015109 Quercus lobata HOM05D001842 ORTHO05D001849 4.3e-06 54.7 72 40.3
RcHm_v2.0_Chr7g0215891 Rosa chinensis HOM05D001842 ORTHO05D001849 4.3e-06 54.7 28 78.6
RcHm_v2.0_Chr7g0219801 Rosa chinensis HOM05D001842 ORTHO05D001849 4.3e-06 54.7 28 78.6
Thecc.08G062300 Theobroma cacao HOM05D001842 ORTHO05D001849 4.3e-06 54.7 69 42.0
CiPaw.07G136200 Carya illinoinensis HOM05D001842 ORTHO05D001849 5.6e-06 54.3 73 38.4
FvH4_5g25580 Fragaria vesca HOM05D001842 ORTHO05D001849 5.6e-06 54.3 28 78.6
FAN18G3820 Fragaria x ananassa HOM05D001842 ORTHO05D001849 5.6e-06 54.3 28 78.6
BcaB03g14302 Brassica carinata HOM05D001842 ORTHO05D001849 7.3e-06 53.9 27 81.5
ECA234G4380 Erigeron canadensis HOM05D001418 ORTHO05D002038 7.3e-06 53.9 52 53.8
Ciclev10000095m.g Citrus clementina HOM05D001842 ORTHO05D001849 9.5e-06 53.5 75 40.0
Duzib093G1115 Durio zibethinus HOM05D001842 ORTHO05D001849 9.5e-06 53.5 69 40.6


User provided reference genes

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