Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.5e-264 915.6 455 100.0
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 8.3e-231 803.5 455 89.2
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 3.1e-230 801.6 452 88.1
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 6.4e-223 777.3 447 86.4
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 3.9e-220 768.1 456 84.2
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 4.9e-215 751.1 453 81.9
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 8.3e-215 750.4 454 80.6
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 2.4e-214 748.8 422 87.7
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 2.4e-214 748.8 454 80.2
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 3.2e-214 748.4 454 80.4
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 4.1e-214 748.0 454 80.4
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 7.8e-213 743.8 453 80.4
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 3.0e-212 741.9 482 79.0
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 3.9e-212 741.5 454 81.7
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 3.9e-212 741.5 451 80.9
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 3.9e-212 741.5 453 80.8
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 8.6e-212 740.3 454 79.5
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 1.9e-211 739.2 449 82.6
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 5.6e-211 737.6 448 81.2
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 1.2e-210 736.5 448 81.0
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 1.6e-210 736.1 453 80.8
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 1.6e-210 736.1 437 82.2
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 2.8e-210 735.3 454 80.2
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 6.2e-210 734.2 481 76.7
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 8.1e-210 733.8 456 81.4
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 2.3e-209 732.3 455 78.7
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 6.8e-209 730.7 485 75.1
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 6.8e-209 730.7 455 78.0
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 2.0e-208 729.2 448 79.5
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 2.0e-208 729.2 449 80.2
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 4.4e-208 728.0 454 78.9
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 7.5e-208 727.2 452 80.1
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 9.9e-208 726.9 433 81.5
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 1.7e-207 726.1 452 79.6
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 2.2e-207 725.7 453 77.3
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 7.1e-206 720.7 454 77.3
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 7.1e-206 720.7 448 79.9
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 9.2e-206 720.3 448 79.7
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 1.6e-205 719.5 455 79.8
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 2.1e-205 719.2 457 77.7
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 2.1e-205 719.2 454 78.4
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 6.0e-205 717.6 452 79.0
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 1.3e-204 716.5 463 77.3
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 2.3e-204 715.7 456 78.1
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 5.6e-203 711.1 451 76.7
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 5.6e-203 711.1 454 74.9
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 7.3e-203 710.7 438 79.7
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 9.5e-203 710.3 457 76.4
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 1.6e-202 709.5 449 75.7
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 1.6e-202 709.5 501 75.4
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 3.6e-202 708.4 438 79.7
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 3.6e-202 708.4 452 78.1
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 3.6e-202 708.4 433 81.5
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 8.1e-202 707.2 436 78.7
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 8.1e-202 707.2 472 73.9
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 4.0e-201 704.9 435 78.4
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 8.9e-201 703.7 460 75.2
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 1.5e-200 703.0 438 79.5
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 1.5e-200 703.0 447 76.7
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 7.6e-200 700.7 449 74.8
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 9.9e-200 700.3 452 77.2
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 1.7e-199 699.5 452 77.2
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 2.4e-198 695.7 448 75.2
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 1.6e-197 693.0 449 73.9
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 4.6e-197 691.4 468 71.6
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 6.0e-197 691.0 449 76.6
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 6.0e-197 691.0 449 74.2
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 6.0e-197 691.0 450 75.8
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 1.0e-196 690.3 448 75.7
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 1.0e-196 690.3 453 73.3
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 1.7e-196 689.5 449 74.4
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 1.7e-196 689.5 449 73.7
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 3.9e-196 688.3 454 75.6
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 6.6e-196 687.6 461 72.0
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 8.6e-196 687.2 454 75.3
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 2.5e-195 685.6 460 73.0
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 3.3e-195 685.3 454 72.9
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 3.3e-195 685.3 435 77.5
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 4.3e-195 684.9 448 75.0
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 5.6e-195 684.5 438 77.2
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 9.6e-195 683.7 449 73.5
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 9.6e-195 683.7 439 76.5
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 2.1e-194 682.6 454 75.1
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 6.9e-193 677.6 473 70.4
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 9.0e-193 677.2 453 76.2
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 1.5e-192 676.4 409 83.9
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 3.4e-192 675.2 478 69.7
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 4.2e-190 668.3 458 71.2
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 1.0e-188 663.7 458 73.4
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 1.9e-187 659.4 464 72.0
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 1.2e-184 650.2 482 71.0
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 2.0e-184 649.4 432 72.0
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 9.9e-184 647.1 487 66.7
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 2.9e-183 645.6 448 72.1
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 6.4e-183 644.4 415 76.1
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 1.1e-177 627.1 419 72.6
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 1.2e-173 613.6 410 74.4
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 1.2e-173 613.6 392 74.2
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 1.6e-173 613.2 470 68.1
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 6.7e-172 607.8 463 65.7
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 2.5e-171 605.9 449 69.5
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 7.4e-171 604.4 453 68.0
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 1.8e-169 599.7 366 80.6
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 2.2e-162 576.2 320 87.8
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 1.9e-155 553.1 429 62.0
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 4.8e-154 548.5 433 61.4
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 1.8e-153 546.6 433 60.5
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 4.7e-149 531.9 430 61.2
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 9.1e-145 517.7 429 57.3
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 3.3e-139 499.2 454 60.1
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 7.0e-129 464.9 278 79.9
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 5.4e-121 438.7 448 57.6
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 2.0e-115 420.2 437 46.7
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 4.9e-106 389.0 428 49.5
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 1.7e-98 364.0 318 61.3
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 1.4e-97 360.9 374 55.6
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 3.5e-88 329.7 182 86.8
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 7.8e-88 328.6 485 38.4
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 3.4e-59 233.4 340 43.2
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 1.9e-57 227.6 195 65.1
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 4.3e-54 216.5 108 89.8
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 8.2e-53 212.2 377 39.3
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 3.2e-49 200.3 393 36.4
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 6.3e-45 186.0 123 78.0
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 1.0e-42 178.7 124 75.0
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 9.7e-38 162.2 137 63.5
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 7.2e-33 146.0 101 71.3
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 7.4e-30 136.0 85 64.7
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 8.2e-29 132.5 126 53.2
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 4.4e-22 110.2 192 33.3
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 5.7e-22 109.8 53 84.9
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 7.4e-22 109.4 65 70.8
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 1.2e-19 102.1 72 65.3
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 4.5e-19 100.1 101 54.5
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 4.5e-19 100.1 107 56.1
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 2.2e-18 97.8 73 67.1
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 1.2e-16 92.0 66 65.2
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 3.4e-14 84.0 56 75.0


User provided reference genes

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