Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039859 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 1.2e-32 142.5 69 100.0
CSS0037508 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 2.6e-27 124.8 67 89.6
CSS0048282 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 4.4e-27 124.0 65 90.8
CSS0043694 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 2.9e-26 121.3 62 93.5
CSS0010985 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 1.9e-22 108.6 55 92.7
CSS0016703 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 3.3e-22 107.8 54 94.4
vmacro20980 Vaccinium macrocarpon HOM05D003518 ORTHO05D005164 7.3e-22 106.7 64 71.9
Dinv43741 Davidia involucrata HOM05D003518 ORTHO05D005164 4.0e-20 100.9 60 78.3
Rhsim07G0023000 Rhododendron simsii HOM05D003518 ORTHO05D005164 2.6e-19 98.2 64 65.6
Rhsim01G0160000 Rhododendron simsii HOM05D003518 ORTHO05D005164 7.6e-19 96.7 60 68.3
Dinv32408 Davidia involucrata HOM05D003518 ORTHO05D005164 9.9e-19 96.3 64 70.3
Actinidia33452 Actinidia chinensis HOM05D003518 ORTHO05D005164 2.9e-18 94.7 61 70.5
Potri.002G151800 Populus trichocarpa HOM05D003518 ORTHO05D005164 3.8e-18 94.4 63 66.7
Hma1.2p1_0132F.1_g060640 Hydrangea macrophylla HOM05D003518 ORTHO05D005164 3.2e-17 91.3 63 68.3
Duzib133G1143 Durio zibethinus HOM05D003518 ORTHO05D005164 4.2e-17 90.9 63 58.7
Sabra02G0120000 Salix brachista HOM05D003518 ORTHO05D005164 1.6e-16 89.0 64 62.5
Prupe.2G151300 Prunus persica HOM05D003518 ORTHO05D005164 3.5e-16 87.8 63 58.7
CANSAT56G2265 Cannabis sativa HOM05D003518 ORTHO05D005164 4.6e-16 87.4 66 54.5
Cc02_g37010 Coffea canephora HOM05D003518 ORTHO05D005164 6.0e-16 87.0 65 56.9
FAN03G3110 Fragaria x ananassa HOM05D003518 ORTHO05D005164 6.0e-16 87.0 64 60.9
Potri.014G074300 Populus trichocarpa HOM05D003518 ORTHO05D005164 6.0e-16 87.0 64 59.4
RcHm_v2.0_Chr1g0351731 Rosa chinensis HOM05D003518 ORTHO05D005164 6.0e-16 87.0 62 64.5
FvH4_7g12710 Fragaria vesca HOM05D003518 ORTHO05D005164 1.0e-15 86.3 62 62.9
FAN01G1761 Fragaria x ananassa HOM05D003518 ORTHO05D005164 1.0e-15 86.3 62 62.9
FAN06G1131 Fragaria x ananassa HOM05D003518 ORTHO05D005164 1.0e-15 86.3 62 62.9
FAN06G5121 Fragaria x ananassa HOM05D003518 ORTHO05D005164 1.0e-15 86.3 62 62.9
MD02G1197300 Malus domestica HOM05D003518 ORTHO05D005164 1.3e-15 85.9 62 58.1
Atru.chr5.372 Acer truncatum HOM05D003518 ORTHO05D005164 1.7e-15 85.5 61 62.3
Manes.01G263400 Manihot esculenta HOM05D003518 ORTHO05D005164 1.7e-15 85.5 62 59.7
GSVIVG01027580001 Vitis vinifera HOM05D003518 ORTHO05D005164 1.7e-15 85.5 58 63.8
TWI14G0835 Tripterygium wilfordii HOM05D003518 ORTHO05D005164 3.0e-15 84.7 65 58.5
FAN10G3707 Fragaria x ananassa HOM05D003518 ORTHO05D005164 3.9e-15 84.3 62 61.3
Ciclev10019439m.g Citrus clementina HOM05D003518 ORTHO05D005164 5.1e-15 84.0 62 56.5
FAN10G3827 Fragaria x ananassa HOM05D003518 ORTHO05D005164 6.6e-15 83.6 62 61.3
Gohir.A12G102800 Gossypium hirsutum HOM05D003518 ORTHO05D005164 8.7e-15 83.2 63 54.0
TWI59G1247 Tripterygium wilfordii HOM05D003518 ORTHO05D005164 8.7e-15 83.2 60 60.0
Lalb_Chr04g0256591 Lupinus albus HOM05D003518 ORTHO05D005164 1.1e-14 82.8 56 66.1
Sabra14G0053000 Salix brachista HOM05D003518 ORTHO05D005164 1.1e-14 82.8 65 56.9
CiPaw.01G258000 Carya illinoinensis HOM05D003518 ORTHO05D005164 1.5e-14 82.4 63 55.6
Lsat_1_v5_gn_7_6740 Lactuca sativa HOM05D003518 ORTHO05D005164 1.5e-14 82.4 64 59.4
Oeu058604.1 Olea europaea HOM05D003518 ORTHO05D005164 1.5e-14 82.4 62 58.1
Gorai.008G115300 Gossypium raimondii HOM05D003518 ORTHO05D005164 2.5e-14 81.6 63 54.0
Lalb_Chr17g0340051 Lupinus albus HOM05D003518 ORTHO05D005164 2.5e-14 81.6 59 62.7
Duzib138G0903 Durio zibethinus HOM05D003518 ORTHO05D005164 3.3e-14 81.3 64 51.6
Ah.05g175810 Amaranthus hybridus HOM05D003518 ORTHO05D005164 5.6e-14 80.5 56 57.1
Medtr8g033180 Medicago truncatula HOM05D003518 ORTHO05D005164 5.6e-14 80.5 59 61.0
SGA_v2.0_scaffold153G37052 Striga asiatica HOM05D003518 ORTHO05D005164 5.6e-14 80.5 60 56.7
MD07G1123700 Malus domestica HOM05D003518 ORTHO05D005164 1.3e-13 79.3 62 53.2
THA.LOC104802006 Tarenaya hassleriana HOM05D003518 ORTHO05D005164 2.1e-13 78.6 62 53.2
DCAR_015924 Daucus carota HOM05D003518 ORTHO05D005164 2.8e-13 78.2 62 58.1
CiPaw.02G164700 Carya illinoinensis HOM05D003518 ORTHO05D005164 3.6e-13 77.8 62 53.2
Haze_16711 Corylus avellana HOM05D003518 ORTHO05D005164 3.6e-13 77.8 62 54.8
ECA236G3950 Erigeron canadensis HOM05D003518 ORTHO05D005164 3.6e-13 77.8 62 56.5
Manes.05G041800 Manihot esculenta HOM05D003518 ORTHO05D005164 3.6e-13 77.8 58 55.2
PGR042G3961 Punica granatum HOM05D003518 ORTHO05D005164 3.6e-13 77.8 56 58.9
SalBow7G3081 Salvia bowleyana HOM05D003518 ORTHO05D005164 3.6e-13 77.8 59 55.9
Gohir.D11G088000 Gossypium hirsutum HOM05D003518 ORTHO05D005164 6.2e-13 77.0 63 49.2
Gorai.007G093900 Gossypium raimondii HOM05D003518 ORTHO05D005164 6.2e-13 77.0 63 49.2
Oeu024431.2 Olea europaea HOM05D003518 ORTHO05D005164 6.2e-13 77.0 65 56.9
Sc23g0003400 Simmondsia chinensis HOM05D003518 ORTHO05D005164 6.2e-13 77.0 63 55.6
CAN.G170.67 Capsicum annuum HOM05D003518 ORTHO05D005164 8.1e-13 76.6 59 57.6
AUR62033382 Chenopodium quinoa HOM05D003518 ORTHO05D005164 8.1e-13 76.6 56 57.1
Eucgr.E01329 Eucalyptus grandis HOM05D003518 ORTHO05D005164 8.1e-13 76.6 62 54.8
Lj3g0010840 Lotus japonicus HOM05D003518 ORTHO05D005164 8.1e-13 76.6 59 52.5
MBI18_g40306_MAGBIO Magnolia biondii HOM05D003518 ORTHO05D015542 8.1e-13 76.6 62 58.1
PSO782G5439 Papaver somniferum HOM05D003518 ORTHO05D005164 8.1e-13 76.6 53 62.3
EL10Ac1g00954 Beta vulgaris HOM05D003518 ORTHO05D005164 1.1e-12 76.3 56 57.1
arahy.Tifrunner.gnm1.ann1.4HY23M Arachis hypogaea HOM05D003518 ORTHO05D005164 1.4e-12 75.9 58 56.9
Glyma.07G080800 Glycine max HOM05D003518 ORTHO05D005164 1.4e-12 75.9 59 57.6
Nn1g01294 Nelumbo nucifera HOM05D003518 ORTHO05D005164 1.4e-12 75.9 58 60.3
Sopen01g037730 Solanum pennellii HOM05D003518 ORTHO05D005164 1.4e-12 75.9 59 57.6
AUR62004275 Chenopodium quinoa HOM05D003518 ORTHO05D005164 1.8e-12 75.5 56 57.1
MBI11_g05096_MAGBIO Magnolia biondii HOM05D003518 ORTHO05D005164 1.8e-12 75.5 61 57.4
PSO478G4904 Papaver somniferum HOM05D003518 ORTHO05D005164 1.8e-12 75.5 53 62.3
DCAR_006891 Daucus carota HOM05D003518 ORTHO05D005164 2.4e-12 75.1 62 54.8
HanXRQChr04g0122151 Helianthus annuus HOM05D003518 ORTHO05D005164 2.4e-12 75.1 63 54.0
Aqoxy7G00493 Aquilegia oxysepala HOM05D003518 ORTHO05D005164 3.1e-12 74.7 61 54.1
HanXRQChr06g0169291 Helianthus annuus HOM05D003518 ORTHO05D005164 3.1e-12 74.7 63 54.0
Solyc01g091950.4 Solanum lycopersicum HOM05D003518 ORTHO05D005164 3.1e-12 74.7 59 55.9
Sed0024132 Sechium edule HOM05D003518 ORTHO05D005164 4.0e-12 74.3 57 57.9
Nn6g34312 Nelumbo nucifera HOM05D003518 ORTHO05D005164 5.3e-12 73.9 61 55.7
QL08p051054 Quercus lobata HOM05D003518 ORTHO05D005164 6.9e-12 73.6 59 55.9
arahy.Tifrunner.gnm1.ann1.N1W82K Arachis hypogaea HOM05D003518 ORTHO05D005164 9.0e-12 73.2 58 55.2
A04p33950 Brassica napus HOM05D003518 ORTHO05D005164 1.2e-11 72.8 56 57.1
BraA04t18856Z Brassica rapa HOM05D003518 ORTHO05D005164 1.2e-11 72.8 56 57.1
A03p25290 Brassica napus HOM05D003518 ORTHO05D005164 1.5e-11 72.4 56 55.4
ECA234G2542 Erigeron canadensis HOM05D003518 ORTHO05D005164 1.5e-11 72.4 62 56.5
Cpa.g.sc18.167 Carica papaya HOM05D003518 ORTHO05D005164 2.0e-11 72.0 59 49.2
Migut.B01669 Erythranthe guttata HOM05D003518 ORTHO05D005164 2.0e-11 72.0 65 46.2
BcaC01g05115 Brassica carinata HOM05D003518 ORTHO05D005164 3.4e-11 71.2 56 55.4
C03p30180 Brassica napus HOM05D003518 ORTHO05D005164 3.4e-11 71.2 56 55.4
Ca_23782_v3 Cicer arietinum L. HOM05D003518 ORTHO05D005164 3.4e-11 71.2 59 52.5
ClCG05G001980 Citrullus lanatus HOM05D003518 ORTHO05D005164 3.4e-11 71.2 57 57.9
Glyma.03G019200 Glycine max HOM05D003518 ORTHO05D005164 3.4e-11 71.2 59 54.2
Lsat_1_v5_gn_4_37220 Lactuca sativa HOM05D003518 ORTHO05D005164 5.8e-11 70.5 63 50.8
MSTRG.20781 Avicennia marina HOM05D003518 ORTHO05D005164 7.6e-11 70.1 60 51.7
BraA03t11733Z Brassica rapa HOM05D003518 ORTHO05D005164 7.6e-11 70.1 56 53.6
HanXRQChr16g0523541 Helianthus annuus HOM05D003518 ORTHO05D005164 7.6e-11 70.1 62 51.6
BcaB06g29432 Brassica carinata HOM05D003518 ORTHO05D005164 9.9e-11 69.7 56 55.4
BolC3t15366H Brassica oleracea HOM05D003518 ORTHO05D005164 9.9e-11 69.7 56 55.4
BcaB01g03262 Brassica carinata HOM05D003518 ORTHO05D005164 1.3e-10 69.3 53 54.7
VMungo0331G0661 Vigna mungo HOM05D003518 ORTHO05D005164 2.2e-10 68.6 59 50.8
arahy.Tifrunner.gnm1.ann1.I486B7 Arachis hypogaea HOM05D003518 ORTHO05D005164 4.9e-10 67.4 45 62.2
arahy.Tifrunner.gnm1.ann1.UCSC4W Arachis hypogaea HOM05D003518 ORTHO05D005164 4.9e-10 67.4 45 62.2
CARHR140890 Cardamine hirsuta HOM05D003518 ORTHO05D005164 6.4e-10 67.0 53 50.9
AL4G44840 Arabidopsis lyrata HOM05D003518 ORTHO05D005164 8.4e-10 66.6 56 48.2
CSS0013582 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D015542 8.4e-10 66.6 38 81.6
Phvul.010G088200 Phaseolus vulgaris HOM05D003518 ORTHO05D005164 8.4e-10 66.6 56 55.4
Aa31LG1G27140 Aethionema arabicum HOM05D003518 ORTHO05D005164 1.1e-09 66.2 55 47.3
MELO3C006158.2 Cucumis melo HOM05D003518 ORTHO05D005164 1.1e-09 66.2 57 52.6
BcaC02g07077 Brassica carinata HOM05D003518 ORTHO05D005164 2.4e-09 65.1 56 50.0
C04p71760 Brassica napus HOM05D003518 ORTHO05D005164 2.4e-09 65.1 56 50.0
Sp4g27710 Schrenkiella parvula HOM05D003518 ORTHO05D005164 2.4e-09 65.1 56 48.2
CsaV3_3G009390 Cucumis sativus L. HOM05D003518 ORTHO05D005164 4.2e-09 64.3 57 50.9
Thhalv10001388m.g Eutrema salsugineum HOM05D003518 ORTHO05D005164 4.2e-09 64.3 57 45.6
Sed0008201 Sechium edule HOM05D003518 ORTHO05D005164 4.2e-09 64.3 57 50.9
Nitab4.5_0003182g0050 Nicotiana tabacum HOM05D003518 ORTHO05D005164 7.1e-09 63.5 45 66.7
Carub.0004s2832 Capsella rubella HOM05D003518 ORTHO05D005164 1.6e-08 62.4 53 45.3
Hund27333 Selenicereus undatus HOM05D003518 ORTHO05D005164 1.8e-07 58.9 55 50.9
BolC4t28675H Brassica oleracea HOM05D003518 ORTHO05D005164 2.3e-07 58.5 56 46.4
Hund16973 Selenicereus undatus HOM05D003518 ORTHO05D005164 5.1e-07 57.4 55 41.8
Zm00001eb272520 Zea mays HOM05D003518 ORTHO05D005164 6.7e-07 57.0 54 46.3
Peaxi162Scf00021g00116 Petunia axillaris HOM05D003518 ORTHO05D005164 8.7e-07 56.6 44 59.1
HPP92_012965 Vanilla planifolia HOM05D003518 ORTHO05D015542 8.7e-07 56.6 49 51.0
CDE06G2129 Ceratophyllum demersum HOM05D003518 ORTHO05D015542 2.5e-06 55.1 54 48.1


User provided reference genes

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