Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 4.2e-62 241.1 116 100.0
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.2e-61 239.6 116 99.1
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 4.6e-53 211.1 112 87.5
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 2.3e-52 208.8 111 86.5
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 8.7e-52 206.8 112 83.9
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 8.7e-52 206.8 112 84.8
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 1.1e-51 206.5 112 84.8
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 1.1e-51 206.5 112 83.9
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 1.5e-51 206.1 112 84.8
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 1.9e-51 205.7 112 84.8
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 9.7e-51 203.4 113 83.2
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 1.3e-50 203.0 110 85.5
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 2.2e-50 202.2 112 83.0
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 2.2e-50 202.2 112 83.0
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 2.2e-50 202.2 113 82.3
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 2.2e-50 202.2 112 82.1
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 2.8e-50 201.8 111 83.8
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 2.8e-50 201.8 112 83.9
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 2.8e-50 201.8 113 81.4
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 2.8e-50 201.8 111 82.9
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 8.2e-50 200.3 112 83.0
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.1e-49 199.9 112 80.4
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 1.4e-49 199.5 113 79.6
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.8e-49 199.1 112 80.4
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 2.4e-49 198.7 113 78.8
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 2.4e-49 198.7 112 81.2
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.1e-49 198.4 112 80.4
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 3.1e-49 198.4 111 82.9
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 4.1e-49 198.0 113 78.8
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 4.1e-49 198.0 113 79.6
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.1e-49 198.0 112 80.4
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 4.1e-49 198.0 112 80.4
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.3e-49 197.6 112 79.5
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 5.3e-49 197.6 112 79.5
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 5.3e-49 197.6 112 81.2
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 5.3e-49 197.6 111 81.1
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 6.9e-49 197.2 113 78.8
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 6.9e-49 197.2 113 78.8
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 6.9e-49 197.2 113 78.8
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 6.9e-49 197.2 113 78.8
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 6.9e-49 197.2 112 80.4
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 6.9e-49 197.2 112 79.5
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 9.0e-49 196.8 113 78.8
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 9.0e-49 196.8 113 78.8
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 1.2e-48 196.4 112 78.6
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 1.2e-48 196.4 112 81.2
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 1.5e-48 196.1 112 80.4
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 1.5e-48 196.1 113 78.8
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 1.5e-48 196.1 112 80.4
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.5e-48 196.1 112 80.4
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.5e-48 196.1 113 79.6
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 1.5e-48 196.1 113 78.8
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 2.0e-48 195.7 113 77.9
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 2.0e-48 195.7 109 80.7
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.0e-48 195.7 112 80.4
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 2.6e-48 195.3 113 77.9
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 2.6e-48 195.3 113 77.9
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 2.6e-48 195.3 113 77.9
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.6e-48 195.3 113 77.9
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.6e-48 195.3 112 77.7
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.6e-48 195.3 112 77.7
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 3.4e-48 194.9 113 79.6
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 3.4e-48 194.9 113 79.6
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 3.4e-48 194.9 113 77.9
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 4.5e-48 194.5 113 77.0
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 4.5e-48 194.5 113 77.0
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 4.5e-48 194.5 113 77.0
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 4.5e-48 194.5 113 77.0
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 4.5e-48 194.5 113 77.0
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 5.9e-48 194.1 113 78.8
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 5.9e-48 194.1 113 77.0
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 7.7e-48 193.7 113 77.9
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 1.0e-47 193.4 104 85.6
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 1.0e-47 193.4 113 77.9
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.0e-47 193.4 111 81.1
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.3e-47 193.0 111 78.4
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 1.7e-47 192.6 109 81.7
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 1.7e-47 192.6 135 68.9
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 2.2e-47 192.2 109 80.7
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 2.9e-47 191.8 113 78.8
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 2.9e-47 191.8 113 77.0
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 2.9e-47 191.8 113 77.0
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 3.8e-47 191.4 109 79.8
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 3.8e-47 191.4 113 77.9
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 3.8e-47 191.4 112 77.7
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 1.1e-46 189.9 113 77.9
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 1.4e-46 189.5 113 76.1
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.4e-46 189.5 113 77.0
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 1.9e-46 189.1 112 76.8
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 2.5e-46 188.7 111 78.4
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 4.2e-46 188.0 112 73.2
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 4.2e-46 188.0 113 76.1
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 4.2e-46 188.0 112 78.6
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 7.2e-46 187.2 111 78.4
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 7.2e-46 187.2 112 73.2
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 7.2e-46 187.2 113 75.2
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 9.4e-46 186.8 112 75.0
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 2.7e-45 185.3 111 77.5
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 4.6e-45 184.5 99 85.9
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 7.9e-45 183.7 104 81.7
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.8e-44 182.6 112 75.0
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 3.9e-44 181.4 113 73.5
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 1.1e-43 179.9 113 74.3
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.3e-43 178.3 101 82.2
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 5.7e-43 177.6 148 59.5
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 1.3e-42 176.4 107 73.8
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.7e-42 176.0 106 72.6
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 2.2e-42 175.6 101 78.2
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.8e-42 175.3 103 76.7
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 3.7e-42 174.9 96 87.5
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 8.2e-42 173.7 104 75.0
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 1.1e-41 173.3 105 74.3
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 1.8e-41 172.6 104 74.0
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 1.8e-41 172.6 113 71.7
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 6.9e-41 170.6 99 76.8
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 9.1e-41 170.2 102 76.5
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 2.6e-40 168.7 101 75.2
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 1.3e-39 166.4 121 66.9
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 1.3e-39 166.4 176 52.3
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.0e-35 152.5 112 67.9
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 2.2e-34 149.1 88 79.5
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 3.7e-34 148.3 115 65.2
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 2.0e-32 142.5 112 57.1
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 3.5e-32 141.7 113 54.9
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 2.9e-31 138.7 113 54.0
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 1.9e-30 136.0 82 78.0
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 2.1e-29 132.5 113 57.5
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 1.1e-27 126.7 108 52.8
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-26 123.2 113 50.4
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 2.6e-24 115.5 58 84.5
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 1.7e-23 112.8 60 81.7
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 3.8e-23 111.7 103 52.4
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 6.5e-23 110.9 57 80.7
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 1.5e-22 109.8 58 75.9
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 3.2e-22 108.6 99 53.5
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.7e-21 105.5 58 75.9
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.0e-20 101.7 81 61.7
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 2.6e-19 99.0 113 47.8
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 9.7e-19 97.1 141 42.6
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 8.3e-18 94.0 55 83.6
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 1.1e-17 93.6 53 88.7
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 1.1e-17 93.6 99 44.4
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 5.3e-17 91.3 80 58.8
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 5.5e-14 81.3 55 65.5
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 2.3e-12 75.9 46 69.6
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 2.6e-11 72.4 58 65.5
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 2.4e-09 65.9 109 34.9
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 9.5e-06 53.9 82 42.7


User provided reference genes

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