Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 2.0e-283 978.4 495 100.0
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 9.2e-276 953.0 495 98.0
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 2.3e-202 709.1 495 73.9
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 1.5e-180 636.7 500 65.0
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 6.1e-179 631.3 494 65.2
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 3.0e-178 629.0 496 64.3
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 4.9e-176 621.7 495 65.1
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 8.3e-176 620.9 475 68.0
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 1.6e-174 616.7 475 67.2
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 7.3e-172 607.8 494 63.2
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 3.6e-171 605.5 490 66.9
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 8.9e-170 600.9 500 63.4
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 5.7e-169 598.2 495 63.2
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 9.8e-169 597.4 497 62.4
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.7e-168 596.7 494 62.1
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 2.2e-168 596.3 374 78.1
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 2.4e-167 592.8 487 63.0
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 7.0e-167 591.3 494 59.3
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 2.0e-166 589.7 500 61.2
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 3.3e-164 582.4 495 60.8
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 4.3e-164 582.0 482 62.0
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.3e-164 582.0 495 59.4
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 1.6e-163 580.1 496 60.7
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 3.6e-163 578.9 495 59.2
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.6e-163 578.9 495 59.0
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 8.0e-163 577.8 494 61.5
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.4e-162 577.0 485 59.6
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 3.1e-162 575.9 500 61.0
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 5.2e-162 575.1 495 59.6
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.0e-161 573.2 494 61.1
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.6e-161 572.8 485 59.2
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 2.6e-161 572.8 482 60.8
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 2.4e-159 566.2 480 60.2
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 9.2e-159 564.3 493 59.0
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.7e-158 562.8 494 60.1
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 3.5e-158 562.4 486 59.5
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 6.0e-158 561.6 495 59.4
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 1.0e-157 560.8 492 59.8
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 1.3e-157 560.5 499 58.1
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.7e-157 560.1 495 58.0
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 2.3e-157 559.7 477 61.0
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 2.3e-157 559.7 496 58.9
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 3.0e-157 559.3 486 59.1
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 3.0e-157 559.3 486 59.3
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.6e-157 557.8 495 58.0
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 8.6e-157 557.8 496 58.3
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 1.1e-156 557.4 488 59.2
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 3.3e-156 555.8 494 59.9
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.2e-155 553.9 498 57.6
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 1.6e-155 553.5 493 58.8
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 2.1e-155 553.1 495 57.6
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 4.7e-155 552.0 498 57.6
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 2.0e-153 546.6 487 59.1
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 4.4e-153 545.4 484 59.1
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 2.9e-152 542.7 498 57.6
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 6.4e-152 541.6 487 57.9
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 1.4e-151 540.4 487 56.9
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 2.4e-151 539.7 477 58.7
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 3.2e-151 539.3 486 57.4
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 4.1e-151 538.9 486 58.2
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 5.4e-151 538.5 486 56.0
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 7.1e-151 538.1 499 57.1
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 7.1e-151 538.1 486 58.6
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 1.6e-150 537.0 471 57.7
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 1.3e-149 533.9 474 59.7
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 1.7e-149 533.5 492 55.9
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 3.0e-149 532.7 484 56.6
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 3.0e-149 532.7 496 57.1
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 8.6e-149 531.2 496 57.1
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 4.3e-148 528.9 483 56.5
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 4.3e-148 528.9 490 56.3
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 4.3e-148 528.9 490 56.3
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 5.6e-148 528.5 488 55.5
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 2.1e-147 526.6 491 56.8
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 1.4e-146 523.9 491 55.4
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.8e-146 523.5 495 56.2
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 6.8e-146 521.5 496 56.7
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 9.9e-145 517.7 422 62.6
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 2.9e-144 516.2 532 52.3
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 4.9e-144 515.4 493 55.0
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 1.9e-143 513.5 492 54.9
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 2.3e-141 506.5 491 55.2
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 2.3e-141 506.5 501 54.5
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 3.9e-141 505.8 495 53.7
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 6.6e-141 505.0 490 55.7
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 2.5e-140 503.1 486 55.3
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 9.6e-140 501.1 480 54.6
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.2e-139 500.7 498 53.2
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 4.7e-139 498.8 504 53.6
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 6.2e-139 498.4 374 65.5
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 8.1e-139 498.0 487 55.0
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 1.4e-138 497.3 490 53.3
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 3.1e-138 496.1 490 54.5
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 5.2e-138 495.4 486 53.7
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 5.2e-138 495.4 500 53.2
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 7.6e-137 491.5 488 54.3
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 1.3e-136 490.7 499 52.9
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 2.9e-136 489.6 485 54.4
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 4.9e-136 488.8 488 53.9
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 2.4e-135 486.5 493 52.9
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 5.4e-135 485.3 488 53.9
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 4.6e-134 482.3 488 52.7
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.8e-131 473.0 492 52.2
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 3.6e-131 472.6 469 55.0
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 3.5e-126 456.1 490 52.0
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 4.3e-124 449.1 383 59.3
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.3e-117 426.8 482 50.8
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 9.6e-116 421.4 377 59.9
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 4.8e-115 419.1 438 52.7
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 6.9e-114 415.2 485 46.4
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 2.1e-110 403.7 430 52.3
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 1.9e-108 397.1 532 44.0
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 9.3e-103 378.3 292 65.4
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 2.7e-102 376.7 293 66.2
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.0e-101 374.8 415 49.9
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 3.7e-99 366.3 292 64.4
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 4.1e-98 362.8 468 44.0
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 9.1e-98 361.7 329 56.2
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 6.5e-96 355.5 511 42.7
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 8.5e-96 355.1 387 53.2
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 5.5e-95 352.4 498 39.8
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 3.6e-94 349.7 477 42.8
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.5e-92 344.4 254 68.1
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.6e-86 324.3 495 40.2
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 4.8e-83 312.8 415 44.1
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 1.4e-77 294.7 294 50.3
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.1e-71 275.0 423 38.3
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 2.5e-71 273.9 355 43.4
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 4.2e-71 273.1 255 59.2
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 2.7e-70 270.4 321 47.0
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 4.0e-69 266.5 378 41.0
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 5.7e-68 262.7 259 57.5
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 1.7e-67 261.2 183 72.7
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 1.2e-65 255.0 492 34.6
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 1.3e-64 251.5 487 34.3
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 4.2e-63 246.5 163 74.2
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 6.8e-61 239.2 478 33.3
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.2e-60 238.4 266 50.8
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 7.5e-60 235.7 233 54.1
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 1.2e-57 228.4 186 62.9
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 3.5e-57 226.9 597 31.5
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 4.5e-57 226.5 377 36.1
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 6.6e-56 222.6 540 30.2
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 3.3e-55 220.3 173 64.7
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 8.0e-54 215.7 474 32.3
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.4e-50 204.1 503 29.2
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 4.1e-50 203.4 452 35.0
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 1.2e-49 201.8 424 33.0
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 6.6e-48 196.1 376 36.4
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 8.6e-48 195.7 255 43.9
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 8.0e-46 189.1 280 41.4
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 2.9e-43 180.6 191 52.9
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 1.1e-42 178.7 269 40.1
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 1.9e-39 167.9 480 29.8
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 1.5e-36 158.3 252 36.1
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 4.1e-34 150.2 146 56.2
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 2.1e-33 147.9 121 57.9
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.3e-31 140.6 98 65.3
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 4.3e-31 140.2 128 55.5
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.1e-29 135.6 185 49.2
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 2.6e-28 131.0 93 67.7
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 4.4e-28 130.2 134 48.5
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 7.6e-28 129.4 312 34.0
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 1.3e-27 128.6 133 48.1
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 2.7e-25 120.9 141 51.1
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 5.3e-21 106.7 110 49.1
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 6.0e-17 93.2 103 41.7
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 6.6e-16 89.7 145 38.6
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 7.6e-12 76.3 170 27.1
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.1e-09 68.2 72 47.2


User provided reference genes

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