Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039805 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 2.5e-77 292.0 138 100.0
CSS0027878 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 6.3e-65 250.8 157 80.9
Actinidia07134 Actinidia chinensis HOM05D004609 ORTHO05D005537 4.8e-49 198.0 174 60.3
CSS0023307 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 2.0e-47 192.6 177 58.8
Eucgr.B02494 Eucalyptus grandis HOM05D004609 ORTHO05D005537 8.5e-46 187.2 171 56.1
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 3.2e-45 185.3 176 55.7
Rhsim13G0094100 Rhododendron simsii HOM05D004609 ORTHO05D005537 3.2e-45 185.3 177 56.5
CiPaw.13G112500 Carya illinoinensis HOM05D004609 ORTHO05D005537 5.5e-45 184.5 177 55.4
CSS0022919 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 7.2e-45 184.1 156 61.5
Rhsim01G0217400 Rhododendron simsii HOM05D004609 ORTHO05D005537 2.1e-44 182.6 156 60.3
arahy.Tifrunner.gnm1.ann1.M55FGE Arachis hypogaea HOM05D004609 ORTHO05D005537 3.6e-44 181.8 171 56.1
Cc01_g11180 Coffea canephora HOM05D004609 ORTHO05D005537 4.7e-44 181.4 177 54.8
arahy.Tifrunner.gnm1.ann1.DB762C Arachis hypogaea HOM05D004609 ORTHO05D005537 6.1e-44 181.0 171 56.1
arahy.Tifrunner.gnm1.ann1.ZK6QPF Arachis hypogaea HOM05D004609 ORTHO05D005537 6.1e-44 181.0 171 56.1
Dinv32753 Davidia involucrata HOM05D004609 ORTHO05D005537 1.8e-43 179.5 156 60.3
Atru.chr3.3636 Acer truncatum HOM05D004609 ORTHO05D005537 2.3e-43 179.1 156 60.3
TAR623G1761 Trochodendron aralioides HOM05D004609 ORTHO05D005537 3.0e-43 178.7 172 55.8
QL03p063529 Quercus lobata HOM05D004609 ORTHO05D005537 3.4e-42 175.3 155 58.7
QL03p063925 Quercus lobata HOM05D004609 ORTHO05D005537 3.4e-42 175.3 155 58.7
Dinv32752 Davidia involucrata HOM05D004609 ORTHO05D005537 4.4e-42 174.9 156 59.0
Lj1A191G19 Lonicera japonica HOM05D004609 ORTHO05D005537 5.7e-42 174.5 156 57.7
Manes.11G144600 Manihot esculenta HOM05D004609 ORTHO05D005537 7.5e-42 174.1 156 58.3
PGSC0003DMG400008104 Solanum tuberosum HOM05D004609 ORTHO05D005537 9.8e-42 173.7 155 57.4
TWI79G0533 Tripterygium wilfordii HOM05D004609 ORTHO05D005537 1.3e-41 173.3 156 57.7
Haze_10438 Corylus avellana HOM05D004609 ORTHO05D005537 2.2e-41 172.6 131 65.6
Oeu059598.1 Olea europaea HOM05D004609 ORTHO05D005537 2.8e-41 172.2 156 57.7
Solyc11g069360.2 Solanum lycopersicum HOM05D004609 ORTHO05D005537 3.7e-41 171.8 155 57.4
Sopen11g028080 Solanum pennellii HOM05D004609 ORTHO05D005537 3.7e-41 171.8 155 57.4
Phvul.011G078800 Phaseolus vulgaris HOM05D004609 ORTHO05D005537 4.8e-41 171.4 171 52.6
TPR.G15569 Trifolium pratense HOM05D004609 ORTHO05D005537 4.8e-41 171.4 131 64.9
Glyma.11G147000 Glycine max HOM05D004609 ORTHO05D005537 6.3e-41 171.0 156 55.8
Hund02313 Selenicereus undatus HOM05D004609 ORTHO05D005537 6.3e-41 171.0 176 52.8
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 8.3e-41 170.6 153 56.9
Hma1.2p1_1031F.1_g250010 Hydrangea macrophylla HOM05D004609 ORTHO05D005537 1.1e-40 170.2 155 57.4
Medtr4g059530 Medicago truncatula HOM05D004609 ORTHO05D005537 1.1e-40 170.2 131 64.9
Medtr4g459430 Medicago truncatula HOM05D004609 ORTHO05D005537 1.1e-40 170.2 131 64.9
Lj3g0003868 Lotus japonicus HOM05D004609 ORTHO05D005537 1.4e-40 169.9 156 55.8
CAN.G631.22 Capsicum annuum HOM05D004609 ORTHO05D005537 3.1e-40 168.7 155 56.1
MD11G1134900 Malus domestica HOM05D004609 ORTHO05D005537 3.1e-40 168.7 156 56.4
Nitab4.5_0000650g0230 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.1e-40 168.7 153 58.2
Hund10347 Selenicereus undatus HOM05D004609 ORTHO05D005537 3.1e-40 168.7 172 52.3
THA.LOC104799500 Tarenaya hassleriana HOM05D004609 ORTHO05D005537 5.4e-40 167.9 172 53.5
Cfa011322 Carpinus fangiana HOM05D004609 ORTHO05D005537 1.2e-39 166.8 131 64.9
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 1.6e-39 166.4 155 56.1
Psat1g080680 Pisum sativum HOM05D004609 ORTHO05D005537 2.7e-39 165.6 131 63.4
GSVIVG01025180001 Vitis vinifera HOM05D004609 ORTHO05D005537 2.7e-39 165.6 155 56.8
Gohir.D13G235900 Gossypium hirsutum HOM05D004609 ORTHO05D005537 3.5e-39 165.2 130 65.4
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 3.5e-39 165.2 130 65.4
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 3.5e-39 165.2 155 56.8
RcHm_v2.0_Chr5g0059481 Rosa chinensis HOM05D004609 ORTHO05D005537 3.5e-39 165.2 156 55.1
Peaxi162Scf00270g00828 Petunia axillaris HOM05D004609 ORTHO05D005537 4.5e-39 164.9 151 57.0
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 5.9e-39 164.5 156 56.4
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 7.7e-39 164.1 156 56.4
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 7.7e-39 164.1 131 61.8
MD03G1117100 Malus domestica HOM05D004609 ORTHO05D005537 7.7e-39 164.1 156 55.1
Potri.009G025500 Populus trichocarpa HOM05D004609 ORTHO05D005537 7.7e-39 164.1 131 61.8
FAN16G0772 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.3e-38 163.3 156 55.8
Cpa.g.sc216.14 Carica papaya HOM05D004609 ORTHO05D005537 1.7e-38 162.9 131 61.8
Prupe.6G100900 Prunus persica HOM05D004609 ORTHO05D005537 1.7e-38 162.9 156 55.1
FAN25G2211 Fragaria x ananassa HOM05D004609 ORTHO05D005537 2.9e-38 162.2 156 55.1
PSO478G0080 Papaver somniferum HOM05D004609 ORTHO05D005537 3.8e-38 161.8 171 51.5
VMungo1127G1456 Vigna mungo HOM05D004609 ORTHO05D005537 3.8e-38 161.8 156 52.6
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 5.0e-38 161.4 156 55.1
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 5.0e-38 161.4 128 64.8
Sc03g0007720 Simmondsia chinensis HOM05D004609 ORTHO05D005537 5.0e-38 161.4 172 51.2
COL.COLO4_18340 Corchorus olitorius HOM05D004609 ORTHO05D005537 6.5e-38 161.0 130 63.1
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 6.5e-38 161.0 156 55.8
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 8.5e-38 160.6 171 52.0
Nn2g13092 Nelumbo nucifera HOM05D004609 ORTHO05D005537 1.1e-37 160.2 130 63.8
Nitab4.5_0004205g0030 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.1e-37 160.2 170 52.4
Sabra09G0016900 Salix brachista HOM05D004609 ORTHO05D005537 1.1e-37 160.2 156 53.2
TAR633G2157 Trochodendron aralioides HOM05D004609 ORTHO05D005537 1.1e-37 160.2 131 63.4
Ca_05255_v3 Cicer arietinum L. HOM05D004609 ORTHO05D005537 1.5e-37 159.8 156 53.2
ClCG03G002070 Citrullus lanatus HOM05D004609 ORTHO05D005537 1.5e-37 159.8 171 50.9
MBI07_g19316_MAGBIO Magnolia biondii HOM05D004609 ORTHO05D005537 3.2e-37 158.7 130 63.1
SalBow3G2420 Salvia bowleyana HOM05D004609 ORTHO05D005537 4.2e-37 158.3 186 47.3
SalBow6G5279 Salvia bowleyana HOM05D004609 ORTHO05D005537 5.5e-37 157.9 172 50.6
DCAR_006058 Daucus carota HOM05D004609 ORTHO05D005537 7.2e-37 157.5 153 55.6
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 7.2e-37 157.5 156 53.8
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 9.4e-37 157.1 128 63.3
Migut.D02219 Erythranthe guttata HOM05D004609 ORTHO05D005537 9.4e-37 157.1 156 53.8
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 1.2e-36 156.8 155 53.5
CsaV3_1G012730 Cucumis sativus L. HOM05D004609 ORTHO05D005537 1.6e-36 156.4 170 49.4
ECA248G0132 Erigeron canadensis HOM05D004609 ORTHO05D005537 2.1e-36 156.0 156 53.2
Zm00001eb007760 Zea mays HOM05D004609 ORTHO05D005537 2.1e-36 156.0 128 60.9
Oeu002864.1 Olea europaea HOM05D004609 ORTHO05D005537 2.7e-36 155.6 131 61.1
Thecc.09G339900 Theobroma cacao HOM05D004609 ORTHO05D005537 2.7e-36 155.6 130 62.3
ATR0115G025 Amborella trichopoda HOM05D004609 ORTHO05D005537 3.6e-36 155.2 128 61.7
AL8G37180 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 3.6e-36 155.2 131 59.5
arahy.Tifrunner.gnm1.ann1.GT28YG Arachis hypogaea HOM05D004609 ORTHO05D005537 3.6e-36 155.2 155 53.5
CANSAT54G0849 Cannabis sativa HOM05D004609 ORTHO05D005537 4.7e-36 154.8 130 62.3
Carub.0008s2127 Capsella rubella HOM05D004609 ORTHO05D005537 4.7e-36 154.8 131 59.5
CARHR274250 Cardamine hirsuta HOM05D004609 ORTHO05D005537 6.1e-36 154.5 131 59.5
Sed0020077 Sechium edule HOM05D004609 ORTHO05D005537 8.0e-36 154.1 171 49.7
MSTRG.17807 Avicennia marina HOM05D004609 ORTHO05D005537 1.0e-35 153.7 156 52.6
Duzib168G0882 Durio zibethinus HOM05D004609 ORTHO05D005537 1.4e-35 153.3 130 60.8
EL10Ac7g18241 Beta vulgaris HOM05D004609 ORTHO05D005537 1.8e-35 152.9 155 53.5
Nitab4.5_0006639g0040 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.8e-35 152.9 155 52.9
Nitab4.5_0012973g0010 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.8e-35 152.9 153 52.9
Thhalv10014329m.g Eutrema salsugineum HOM05D004609 ORTHO05D005537 2.3e-35 152.5 131 58.8
SGA_v2.0_scaffold80G25763 Striga asiatica HOM05D004609 ORTHO05D005537 2.3e-35 152.5 172 49.4
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 3.0e-35 152.1 170 47.6
Lsat_1_v5_gn_1_65361 Lactuca sativa HOM05D004609 ORTHO05D005537 3.0e-35 152.1 153 52.3
BolC9t58203H Brassica oleracea HOM05D004609 ORTHO05D005537 4.0e-35 151.8 131 58.8
Sp6g22160 Schrenkiella parvula HOM05D004609 ORTHO05D005537 6.8e-35 151.0 131 58.0
Ah.15g094800 Amaranthus hybridus HOM05D004609 ORTHO05D005537 1.5e-34 149.8 171 48.5
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 2.0e-34 149.4 131 58.0
C09p53290 Brassica napus HOM05D004609 ORTHO05D005537 2.0e-34 149.4 131 58.0
BraA10t43855Z Brassica rapa HOM05D004609 ORTHO05D005537 3.4e-34 148.7 131 58.0
A10p17780 Brassica napus HOM05D004609 ORTHO05D005537 7.5e-34 147.5 131 58.0
BcaB08g36354 Brassica carinata HOM05D004609 ORTHO05D005537 9.8e-34 147.1 131 57.3
CDE09G0954 Ceratophyllum demersum HOM05D004609 ORTHO05D005537 9.8e-34 147.1 131 56.5
Nitab4.5_0006639g0020 Nicotiana tabacum HOM05D004609 ORTHO05D005537 9.8e-34 147.1 144 52.8
AUR62001379 Chenopodium quinoa HOM05D004609 ORTHO05D005537 1.3e-33 146.7 131 58.8
Aa31LG1G12570 Aethionema arabicum HOM05D004609 ORTHO05D005537 2.8e-33 145.6 128 57.8
AUR62009522 Chenopodium quinoa HOM05D004609 ORTHO05D005537 2.8e-33 145.6 131 58.0
AUR62025599 Chenopodium quinoa HOM05D004609 ORTHO05D005537 2.8e-33 145.6 131 58.0
unitig_749.g13641 Utricularia gibba HOM05D004609 ORTHO05D005537 8.3e-33 144.1 170 47.6
BcaB01g04662 Brassica carinata HOM05D004609 ORTHO05D005537 1.1e-32 143.7 128 57.8
SGA_v2.0_scaffold2G00896 Striga asiatica HOM05D004609 ORTHO05D005537 3.1e-32 142.1 156 50.0
DCAR_013489 Daucus carota HOM05D004609 ORTHO05D005537 9.1e-32 140.6 127 58.3
Lsat_1_v5_gn_5_178620 Lactuca sativa HOM05D004609 ORTHO05D005537 9.1e-32 140.6 155 48.4
vmacro03196 Vaccinium macrocarpon HOM05D004609 ORTHO05D005537 1.2e-31 140.2 116 62.1
HPP92_018599 Vanilla planifolia HOM05D004609 ORTHO05D005537 2.0e-31 139.4 127 57.5
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 2.6e-26 122.5 129 47.3
Nitab4.5_0005621g0150 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.8e-24 116.3 117 51.3
SHI25734 Sapria himalayana HOM05D004609 ORTHO05D005537 3.5e-23 112.1 129 48.8
SMO232G0060 Selaginella moellendorffii HOM05D004609 ORTHO05D005537 1.1e-21 107.1 127 43.3
Nitab4.5_0006639g0090 Nicotiana tabacum HOM05D004609 ORTHO05D005537 2.8e-20 102.4 89 59.6
Pp3c1_35360 Physcomitrium patens HOM05D004609 ORTHO05D005537 2.3e-19 99.4 130 39.2
CBR_g32631 Chara braunii HOM05D004609 ORTHO05D005537 5.2e-19 98.2 141 39.7
CBR_g359 Chara braunii HOM05D004609 ORTHO05D005537 5.2e-19 98.2 141 40.4
Nitab4.5_0006639g0060 Nicotiana tabacum HOM05D004609 ORTHO05D005537 6.8e-19 97.8 97 55.7
AagrBONN_evm.TU.Sc2ySwM_368.1656 Anthoceros agrestis HOM05D004609 ORTHO05D005537 2.0e-18 96.3 128 39.8
Mapoly0053s0017 Marchantia polymorpha HOM05D004609 ORTHO05D005537 2.6e-18 95.9 130 37.7
Nitab4.5_0005621g0170 Nicotiana tabacum HOM05D004609 ORTHO05D005537 3.4e-18 95.5 133 42.1
CAN.G604.3 Capsicum annuum HOM05D004609 ORTHO05D005537 4.4e-18 95.1 78 57.7
MCO01G111 Micromonas commoda HOM05D004609 ORTHO05D005537 3.7e-17 92.0 127 37.0
A03p11090 Brassica napus HOM05D004609 ORTHO05D005537 1.1e-16 90.5 80 51.2
BraA03t10423Z Brassica rapa HOM05D004609 ORTHO05D005537 1.1e-16 90.5 80 51.2
CAN.G1153.4 Capsicum annuum HOM05D004609 ORTHO05D005537 2.4e-16 89.4 78 52.6
Glyma.12G067902 Glycine max HOM05D004609 ORTHO05D005537 7.0e-16 87.8 57 71.9
AL4G25930 Arabidopsis lyrata HOM05D004609 ORTHO05D005537 2.3e-14 82.8 91 51.6
AUR62013942 Chenopodium quinoa HOM05D004609 ORTHO05D005537 1.5e-13 80.1 128 36.7
Haze_26358 Corylus avellana HOM05D004609 ORTHO05D005537 7.3e-13 77.8 140 32.9
AT5G60590 Arabidopsis thaliana HOM05D004609 ORTHO05D005537 3.6e-12 75.5 57 64.9
PRCOL_00000940 Prasinoderma coloniale HOM05D004609 ORTHO05D005537 3.1e-11 72.4 139 39.6
BolC3t13744H Brassica oleracea HOM05D004609 ORTHO05D005537 1.7e-09 66.6 54 61.1
Actinidia28417 Actinidia chinensis HOM05D004609 ORTHO05D005537 4.1e-08 62.0 54 63.0
C03p12780 Brassica napus HOM05D004609 ORTHO05D005537 1.2e-07 60.5 40 70.0


User provided reference genes

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