Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 0.0e+00 1248.4 625 100.0
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 4.1e-281 971.1 673 74.3
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 6.4e-274 947.2 661 73.7
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 7.8e-272 940.3 657 74.3
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.2e-259 899.8 614 74.3
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 4.9e-250 867.8 658 68.7
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 1.6e-248 862.8 654 66.8
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 1.7e-247 859.4 666 66.2
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 1.9e-246 855.9 654 66.8
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 8.1e-245 850.5 669 65.2
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 1.5e-243 846.3 661 67.5
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 4.5e-243 844.7 652 66.1
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 9.9e-243 843.6 662 65.4
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 4.2e-241 838.2 661 65.1
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 4.2e-241 838.2 662 65.1
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 3.5e-240 835.1 661 65.5
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 4.6e-240 834.7 649 64.7
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 3.9e-239 831.6 645 65.1
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 1.9e-238 829.3 661 64.1
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 2.8e-237 825.5 640 65.8
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 1.8e-236 822.8 669 62.9
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 5.3e-236 821.2 679 63.5
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 9.0e-236 820.5 669 63.1
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 9.9e-235 817.0 654 63.0
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 1.3e-234 816.6 661 62.3
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 9.3e-233 810.4 661 62.0
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 2.7e-232 808.9 660 64.7
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 1.3e-231 806.6 678 62.2
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 2.5e-230 802.4 664 62.8
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 2.8e-229 798.9 666 62.3
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 3.7e-229 798.5 668 62.9
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 1.4e-228 796.6 665 62.9
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.8e-228 796.2 699 58.8
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 3.8e-226 788.5 679 59.8
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 1.4e-225 786.6 665 61.7
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 4.2e-225 785.0 668 61.5
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 4.2e-225 785.0 648 63.4
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 1.2e-224 783.5 670 61.8
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 4.6e-224 781.6 665 61.8
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 7.9e-224 780.8 749 54.7
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 1.3e-223 780.0 661 61.4
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 2.3e-223 779.2 662 60.6
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 3.0e-223 778.9 656 62.0
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 8.7e-223 777.3 610 64.4
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 1.1e-222 776.9 719 59.4
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 1.5e-222 776.5 660 61.5
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 1.9e-222 776.2 657 61.0
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 4.3e-222 775.0 673 61.1
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 4.3e-222 775.0 654 62.4
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 5.7e-222 774.6 659 60.7
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 7.4e-222 774.2 664 62.0
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 6.3e-221 771.2 674 59.3
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 2.4e-220 769.2 666 61.3
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 3.1e-220 768.8 666 60.8
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 9.0e-220 767.3 666 60.7
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 9.0e-220 767.3 661 59.6
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 3.4e-219 765.4 677 59.2
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 7.6e-219 764.2 665 60.9
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 6.5e-218 761.1 660 60.2
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 2.7e-216 755.7 679 58.9
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 4.6e-216 755.0 680 58.8
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 3.3e-214 748.8 653 59.6
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 6.9e-212 741.1 713 55.7
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 5.0e-210 734.9 668 59.7
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 3.6e-208 728.8 702 57.1
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 4.7e-208 728.4 664 56.6
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 1.3e-205 720.3 673 55.9
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 1.7e-205 719.9 670 56.0
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 1.4e-204 716.8 640 58.1
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 1.8e-204 716.5 666 56.3
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 1.8e-204 716.5 671 55.6
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.5e-203 713.4 664 55.6
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 3.4e-203 712.2 672 55.5
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 3.8e-202 708.8 513 71.3
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 2.1e-200 703.0 653 58.2
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 6.7e-199 698.0 670 54.9
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 2.0e-198 696.4 671 55.1
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 5.7e-198 694.9 673 54.5
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 1.7e-197 693.3 484 76.4
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 2.8e-197 692.6 671 54.8
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 2.8e-197 692.6 673 54.5
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 9.4e-193 677.6 657 56.2
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 2.3e-191 672.9 644 56.2
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 1.3e-186 657.1 653 55.3
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 9.4e-185 651.0 535 64.5
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 2.1e-184 649.8 502 67.1
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 3.1e-180 636.0 675 54.1
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 8.0e-176 621.3 645 51.9
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 1.7e-170 603.6 662 51.2
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 4.3e-169 599.0 535 62.2
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 3.0e-167 592.8 658 50.9
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 1.1e-161 574.3 655 47.2
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 4.7e-144 515.8 528 55.9
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 1.4e-143 514.2 598 48.2
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 5.4e-132 475.7 655 42.6
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 2.4e-124 450.3 372 62.4
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 1.7e-109 401.0 647 36.5
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 4.2e-100 369.8 396 53.8
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 1.2e-99 368.2 657 36.4
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 1.0e-93 348.6 268 66.8
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.7e-69 268.1 451 38.8
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.7e-64 251.5 519 35.8
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 2.9e-61 240.7 594 32.8
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 4.9e-56 223.4 147 72.8
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.8e-55 221.5 230 49.6
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 4.7e-51 206.8 176 56.2
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 4.0e-42 177.2 246 41.1
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 7.1e-39 166.4 98 81.6
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 2.5e-36 157.9 357 34.2
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 1.2e-33 149.1 87 82.8
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 1.2e-33 149.1 94 73.4
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 3.2e-31 141.0 131 59.5
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 1.2e-25 122.5 111 57.7
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 4.6e-22 110.5 117 54.7
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 6.9e-18 96.7 74 68.9
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 7.1e-15 86.7 88 54.5
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 1.3e-13 82.4 70 58.6
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 1.5e-12 79.0 90 52.2
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 5.8e-09 67.0 54 57.4


User provided reference genes

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