Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039770 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.3e-34 148.3 73 100.0
CSS0018211 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 4.1e-31 137.5 73 95.9
vmacro03251 Vaccinium macrocarpon HOM05D007274 ORTHO05D009194 5.9e-30 133.7 73 89.0
Actinidia07190 Actinidia chinensis HOM05D007274 ORTHO05D009194 1.1e-28 129.4 73 84.9
Rhsim13G0101500 Rhododendron simsii HOM05D007274 ORTHO05D009194 1.9e-28 128.6 73 84.9
Rhsim13G0101200 Rhododendron simsii HOM05D007274 ORTHO05D009194 9.4e-28 126.3 73 82.2
Peaxi162Scf00983g00003 Petunia axillaris HOM05D007274 ORTHO05D009194 1.2e-27 125.9 72 81.9
CSS0045495 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.7e-27 124.8 73 86.3
Cc01_g10210 Coffea canephora HOM05D007274 ORTHO05D009194 2.7e-27 124.8 73 80.8
CSS0014818 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 3.6e-27 124.4 73 86.3
Sc06g0006140 Simmondsia chinensis HOM05D007274 ORTHO05D009194 6.1e-27 123.6 73 84.9
Lsat_1_v5_gn_1_64881 Lactuca sativa HOM05D007274 ORTHO05D009194 1.0e-26 122.9 73 82.2
Solyc11g066450.2 Solanum lycopersicum HOM05D007274 ORTHO05D009194 1.0e-26 122.9 73 79.5
Sopen11g026200 Solanum pennellii HOM05D007274 ORTHO05D009194 1.0e-26 122.9 73 79.5
PGSC0003DMG401000458 Solanum tuberosum HOM05D007274 ORTHO05D009194 1.0e-26 122.9 73 79.5
Ciclev10029644m.g Citrus clementina HOM05D007274 ORTHO05D009194 1.4e-26 122.5 73 83.6
Nitab4.5_0000173g0170 Nicotiana tabacum HOM05D007274 ORTHO05D009194 1.4e-26 122.5 73 80.8
Nitab4.5_0009628g0020 Nicotiana tabacum HOM05D007274 ORTHO05D009194 4.0e-26 120.9 73 80.8
Ah.01g004810 Amaranthus hybridus HOM05D007274 ORTHO05D009194 6.8e-26 120.2 73 84.9
Oeu007727.1 Olea europaea HOM05D007274 ORTHO05D009194 6.8e-26 120.2 73 83.6
Manes.04G012400 Manihot esculenta HOM05D007274 ORTHO05D009194 8.8e-26 119.8 73 83.6
CAN.G546.54 Capsicum annuum HOM05D007274 ORTHO05D009194 1.2e-25 119.4 73 79.5
AUR62024013 Chenopodium quinoa HOM05D007274 ORTHO05D009194 1.5e-25 119.0 73 82.2
SalBow6G3121 Salvia bowleyana HOM05D007274 ORTHO05D009194 2.6e-25 118.2 73 82.2
AUR62041328 Chenopodium quinoa HOM05D007274 ORTHO05D009194 5.7e-25 117.1 73 80.8
Hund00829 Selenicereus undatus HOM05D007274 ORTHO05D009194 5.7e-25 117.1 73 80.8
MD03G1128500 Malus domestica HOM05D007274 ORTHO05D009194 7.5e-25 116.7 73 82.2
Cpa.g.sc47.5 Carica papaya HOM05D007274 ORTHO05D009194 9.8e-25 116.3 73 83.6
Potri.004G217300 Populus trichocarpa HOM05D007274 ORTHO05D009194 1.3e-24 115.9 73 82.2
Thecc.09G297800 Theobroma cacao HOM05D007274 ORTHO05D009194 1.3e-24 115.9 73 76.7
A10p18160 Brassica napus HOM05D007274 ORTHO05D009194 1.7e-24 115.5 73 79.5
BraA10t43891Z Brassica rapa HOM05D007274 ORTHO05D009194 1.7e-24 115.5 73 79.5
ECA248G0925 Erigeron canadensis HOM05D007274 ORTHO05D009194 1.7e-24 115.5 73 76.7
PGR102G1958 Punica granatum HOM05D007274 ORTHO05D009194 1.7e-24 115.5 73 78.1
Carub.0006s2065 Capsella rubella HOM05D007274 ORTHO05D009194 2.2e-24 115.2 73 79.5
Migut.D02299 Erythranthe guttata HOM05D007274 ORTHO05D009194 2.2e-24 115.2 73 78.1
QL01p014890 Quercus lobata HOM05D007274 ORTHO05D009194 2.8e-24 114.8 71 78.9
Sabra04G0148000 Salix brachista HOM05D007274 ORTHO05D009194 2.8e-24 114.8 73 80.8
HanXRQChr11g0346021 Helianthus annuus HOM05D007274 ORTHO05D009194 3.7e-24 114.4 73 76.7
Cfa010139 Carpinus fangiana HOM05D007274 ORTHO05D009194 4.9e-24 114.0 73 79.5
Haze_23527 Corylus avellana HOM05D007274 ORTHO05D009194 6.3e-24 113.6 73 76.7
EL10Ac9g21016 Beta vulgaris HOM05D007274 ORTHO05D009194 8.3e-24 113.2 71 80.3
BcaB05g22677 Brassica carinata HOM05D007274 ORTHO05D009194 8.3e-24 113.2 73 78.1
BcaB08g36400 Brassica carinata HOM05D007274 ORTHO05D009194 8.3e-24 113.2 73 78.1
BcaC04g19606 Brassica carinata HOM05D007274 ORTHO05D009194 8.3e-24 113.2 73 78.1
C09p53770 Brassica napus HOM05D007274 ORTHO05D009194 8.3e-24 113.2 73 78.1
BolC9t58252H Brassica oleracea HOM05D007274 ORTHO05D009194 8.3e-24 113.2 73 78.1
CARHR190660 Cardamine hirsuta HOM05D007274 ORTHO05D009194 8.3e-24 113.2 73 78.1
Thhalv10015213m.g Eutrema salsugineum HOM05D007274 ORTHO05D009194 8.3e-24 113.2 73 78.1
Prupe.6G113700 Prunus persica HOM05D007274 ORTHO05D009194 8.3e-24 113.2 73 80.8
Sp6g22530 Schrenkiella parvula HOM05D007274 ORTHO05D009194 8.3e-24 113.2 73 78.1
SGA_v2.0_scaffold277G46704 Striga asiatica HOM05D007274 ORTHO05D009194 8.3e-24 113.2 73 76.7
THA.LOC109116051 Tarenaya hassleriana HOM05D007274 ORTHO05D009194 1.1e-23 112.8 70 80.0
MBI04_g08417_MAGBIO Magnolia biondii HOM05D007274 ORTHO05D009194 1.4e-23 112.5 71 76.1
AT5G22875 Arabidopsis thaliana HOM05D007274 ORTHO05D009194 4.1e-23 110.9 73 75.3
CiPaw.14G106900 Carya illinoinensis HOM05D007274 ORTHO05D009194 4.1e-23 110.9 73 78.1
DCAR_022681 Daucus carota HOM05D007274 ORTHO05D009194 4.1e-23 110.9 73 75.3
Aqoxy1G01060 Aquilegia oxysepala HOM05D007274 ORTHO05D009194 7.0e-23 110.2 71 76.1
Os04g0165500 Oryza sativa ssp. japonica HOM05D007274 ORTHO05D009194 7.0e-23 110.2 73 71.2
Sed0003405 Sechium edule HOM05D007274 ORTHO05D009194 7.0e-23 110.2 73 75.3
AL6G34010 Arabidopsis lyrata HOM05D007274 ORTHO05D009194 9.1e-23 109.8 73 74.0
PSO384G1249 Papaver somniferum HOM05D007274 ORTHO05D009194 9.1e-23 109.8 71 77.5
ClCG02G021670 Citrullus lanatus HOM05D007274 ORTHO05D009194 1.2e-22 109.4 73 75.3
Lj3g0015703 Lotus japonicus HOM05D007274 ORTHO05D009194 1.2e-22 109.4 73 75.3
Atru.chr3.3502 Acer truncatum HOM05D007274 ORTHO05D009194 1.6e-22 109.0 67 82.1
Lalb_Chr19g0136881 Lupinus albus HOM05D007274 ORTHO05D009194 1.6e-22 109.0 73 74.0
RcHm_v2.0_Chr5g0056551 Rosa chinensis HOM05D007274 ORTHO05D009194 1.6e-22 109.0 73 75.3
unitig_899.g15364 Utricularia gibba HOM05D000376 ORTHO05D000237 1.6e-22 109.0 70 75.7
Nn2g13873 Nelumbo nucifera HOM05D007274 ORTHO05D009194 2.0e-22 108.6 71 74.6
arahy.Tifrunner.gnm1.ann1.BZT54Z Arachis hypogaea HOM05D007274 ORTHO05D009194 2.7e-22 108.2 73 76.7
arahy.Tifrunner.gnm1.ann1.F7FWRZ Arachis hypogaea HOM05D007274 ORTHO05D009194 2.7e-22 108.2 73 76.7
FAN21G0952 Fragaria x ananassa HOM05D007274 ORTHO05D009194 2.7e-22 108.2 73 74.0
COL.COLO4_19207 Corchorus olitorius HOM05D007274 ORTHO05D009194 4.5e-22 107.5 73 76.7
Duzib150G1296 Durio zibethinus HOM05D007274 ORTHO05D009194 4.5e-22 107.5 73 72.6
Duzib150G1526 Durio zibethinus HOM05D007274 ORTHO05D009194 4.5e-22 107.5 73 72.6
FAN16G2799 Fragaria x ananassa HOM05D007274 ORTHO05D009194 4.5e-22 107.5 72 72.2
TPR.G36741 Trifolium pratense HOM05D007274 ORTHO05D009194 4.5e-22 107.5 73 72.6
FvH4_3g30550 Fragaria vesca HOM05D007274 ORTHO05D009194 5.9e-22 107.1 73 72.6
FAN11G1565 Fragaria x ananassa HOM05D007274 ORTHO05D009194 5.9e-22 107.1 73 72.6
Aa31LG1G12850 Aethionema arabicum HOM05D007274 ORTHO05D009194 1.0e-21 106.3 73 72.6
Psat7g223680 Pisum sativum HOM05D007274 ORTHO05D009194 1.3e-21 105.9 73 72.6
CANSAT64G0704 Cannabis sativa HOM05D007274 ORTHO05D009194 1.7e-21 105.5 72 73.6
HPP92_002407 Vanilla planifolia HOM05D007274 ORTHO05D009194 2.3e-21 105.1 73 71.2
Ca_10763_v3 Cicer arietinum L. HOM05D007274 ORTHO05D009194 3.8e-21 104.4 73 71.2
Haze_08394 Corylus avellana HOM05D007274 ORTHO05D009194 3.8e-21 104.4 82 65.9
Medtr4g057190 Medicago truncatula HOM05D007274 ORTHO05D009194 6.6e-21 103.6 72 69.4
Nn5g27554 Nelumbo nucifera HOM05D007274 ORTHO05D009194 6.6e-21 103.6 71 73.2
Gohir.D09G062900 Gossypium hirsutum HOM05D007274 ORTHO05D009194 1.1e-20 102.8 73 69.9
Gorai.006G077700 Gossypium raimondii HOM05D007274 ORTHO05D009194 1.1e-20 102.8 73 69.9
GSVIVG01031456001 Vitis vinifera HOM05D007274 ORTHO05D009194 2.5e-20 101.7 71 69.0
BNapus_Darmor_BZH_scaffold_38p00270 Brassica napus HOM05D007274 ORTHO05D009194 3.3e-20 101.3 65 78.5
C02p11370 Brassica napus HOM05D007274 ORTHO05D009194 3.3e-20 101.3 65 78.5
Gohir.A09G064000 Gossypium hirsutum HOM05D007274 ORTHO05D009194 3.3e-20 101.3 73 68.5
Haze_23532 Corylus avellana HOM05D007274 ORTHO05D009194 5.5e-20 100.5 73 69.9
Glyma.12G082200 Glycine max HOM05D007274 ORTHO05D009194 7.2e-20 100.1 65 78.5
BraA02t05697Z Brassica rapa HOM05D007274 ORTHO05D009194 2.8e-19 98.2 65 76.9
Phvul.005G069100 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 3.6e-19 97.8 71 70.4
Phvul.011G086800 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 3.6e-19 97.8 71 70.4
CDE04G2982 Ceratophyllum demersum HOM05D007274 ORTHO05D009194 6.1e-19 97.1 65 70.8
ATR0043G009 Amborella trichopoda HOM05D007274 ORTHO05D009194 8.0e-19 96.7 65 69.2
Glyma.11G192200 Glycine max HOM05D007274 ORTHO05D009194 1.0e-18 96.3 64 76.6
SEGI_23633 Sequoiadendron giganteum HOM05D007274 ORTHO05D009194 2.6e-17 91.7 65 70.8
Mapoly0009s0144 Marchantia polymorpha HOM05D007274 ORTHO05D009194 2.2e-16 88.6 62 69.4
Pp3c6_6370 Physcomitrium patens HOM05D007274 ORTHO05D009194 2.7e-14 81.6 61 68.9
Lsat_1_v5_gn_1_64921 Lactuca sativa HOM05D007274 ORTHO05D009194 1.0e-13 79.7 66 66.7
MD11G1149300 Malus domestica HOM05D007274 ORTHO05D009194 5.0e-13 77.4 53 77.4
TAR369G0919 Trochodendron aralioides HOM05D007274 ORTHO05D009194 6.6e-13 77.0 50 72.0
SHI06197 Sapria himalayana HOM05D005377 ORTHO05D003034 8.9e-10 66.6 66 53.0


User provided reference genes

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