Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 5.6e-195 684.1 350 100.0
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 4.7e-157 558.1 355 81.7
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 9.4e-150 533.9 348 78.7
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 1.2e-147 526.9 348 79.0
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 1.0e-143 513.8 446 64.1
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 2.5e-142 509.2 355 77.2
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 1.0e-140 503.8 348 74.7
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 3.4e-139 498.8 347 75.5
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 3.4e-139 498.8 355 73.0
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 1.7e-138 496.5 342 75.4
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 6.3e-138 494.6 351 73.8
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 4.1e-137 491.9 355 73.8
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 5.4e-137 491.5 350 73.1
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 1.0e-135 487.3 353 73.9
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 1.3e-135 486.9 351 72.1
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 5.0e-135 485.0 340 74.7
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 1.5e-134 483.4 366 71.3
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 7.2e-134 481.1 355 72.1
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 1.6e-133 479.9 353 72.0
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 2.3e-132 476.1 345 72.5
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 6.8e-132 474.6 347 72.0
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 8.9e-132 474.2 353 70.3
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 8.9e-132 474.2 353 70.3
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.2e-131 473.8 344 72.1
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.5e-131 473.4 359 70.8
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.0e-131 473.0 345 71.9
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 3.4e-131 472.2 356 70.2
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 4.4e-131 471.9 357 71.4
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 5.7e-131 471.5 349 71.3
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 9.8e-131 470.7 355 69.6
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 1.7e-130 469.9 361 69.5
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.8e-130 469.2 352 71.0
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 3.7e-130 468.8 353 70.5
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 4.9e-130 468.4 355 72.4
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 4.9e-130 468.4 354 70.6
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 4.9e-130 468.4 351 71.8
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 8.3e-130 467.6 302 76.5
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 8.3e-130 467.6 352 71.0
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 8.3e-130 467.6 332 72.0
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 8.3e-130 467.6 348 70.1
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 3.1e-129 465.7 353 71.7
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 5.4e-129 464.9 354 69.8
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 9.2e-129 464.2 348 71.3
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.5e-126 456.8 365 67.4
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 4.3e-126 455.3 355 69.3
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 5.6e-126 454.9 350 68.9
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 3.6e-125 452.2 361 67.9
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 5.2e-124 448.4 347 66.9
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 1.2e-123 447.2 355 66.2
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 2.0e-123 446.4 353 67.4
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 3.4e-123 445.7 351 68.4
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 4.4e-123 445.3 299 72.9
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 4.4e-123 445.3 346 69.1
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 7.5e-123 444.5 330 69.4
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 1.3e-122 443.7 349 67.9
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 1.3e-122 443.7 350 69.1
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 4.9e-122 441.8 350 68.6
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 8.3e-122 441.0 351 67.5
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 1.4e-121 440.3 299 73.2
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 1.9e-121 439.9 310 71.9
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 3.2e-121 439.1 255 84.3
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 3.2e-121 439.1 349 66.2
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 1.2e-120 437.2 304 74.0
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 2.0e-120 436.4 350 67.1
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 2.0e-120 436.4 352 68.8
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 2.7e-120 436.0 390 62.8
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 7.8e-120 434.5 325 68.9
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 1.0e-119 434.1 343 67.9
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 5.0e-119 431.8 328 67.4
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 5.0e-119 431.8 328 67.4
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 1.1e-118 430.6 351 66.4
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 3.3e-118 429.1 303 71.3
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 3.3e-118 429.1 328 67.4
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 3.3e-118 429.1 328 67.4
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 3.3e-118 429.1 346 66.2
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 4.3e-118 428.7 258 79.5
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 7.3e-118 427.9 302 71.2
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 9.5e-118 427.6 349 66.5
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 2.8e-117 426.0 346 65.0
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 3.6e-117 425.6 339 66.1
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 6.2e-117 424.9 300 72.0
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 2.3e-116 422.9 353 65.2
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 6.8e-116 421.4 347 65.7
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 7.5e-115 417.9 349 65.6
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 1.3e-114 417.2 342 64.0
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 6.4e-114 414.8 339 65.5
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 1.6e-112 410.2 344 64.5
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 3.9e-111 405.6 316 69.6
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 1.1e-110 404.1 301 69.4
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 2.0e-107 393.3 229 81.2
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 9.2e-105 384.4 360 62.5
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 2.1e-104 383.3 303 68.3
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 4.3e-94 349.0 351 53.3
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 4.2e-89 332.4 302 61.6
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 7.3e-86 321.6 361 54.6
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 7.1e-81 305.1 255 60.4
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 2.3e-79 300.1 173 81.5
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 1.5e-78 297.4 163 87.7
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 1.9e-78 297.0 321 47.7
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 5.6e-78 295.4 293 51.5
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 9.3e-73 278.1 345 44.6
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 8.7e-71 271.6 187 69.5
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.5e-67 260.8 144 84.0
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 5.9e-59 232.3 224 47.8
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 4.6e-56 222.6 132 84.1
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 5.1e-55 219.2 125 84.8
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 5.1e-55 219.2 125 84.8
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 8.8e-55 218.4 229 53.7
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.2e-51 208.0 132 75.0
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 3.8e-50 203.0 162 74.1
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 3.5e-43 179.9 308 34.4
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 1.8e-39 167.5 306 33.3
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 5.5e-33 146.0 107 72.9
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 1.2e-32 144.8 247 36.4
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 1.0e-23 115.2 201 39.8
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 3.0e-23 113.6 83 65.1
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 2.8e-21 107.1 92 62.0
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 1.1e-20 105.1 53 90.6
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 8.9e-15 85.5 55 67.3
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 7.0e-12 75.9 138 42.0
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 2.0e-11 74.3 126 38.9
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 4.5e-11 73.2 38 84.2
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 6.6e-10 69.3 126 37.3
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 2.3e-07 60.8 39 71.8
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 2.3e-07 60.8 39 71.8
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 5.2e-07 59.7 269 24.2
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 6.8e-07 59.3 250 25.6
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 8.9e-07 58.9 250 25.6
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.6e-06 57.4 250 25.2
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 2.6e-06 57.4 252 24.6
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 3.4e-06 57.0 252 24.6
HPP92_002889 Vanilla planifolia HOM05D006315 ORTHO05D008052 3.4e-06 57.0 34 73.5
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 4.4e-06 56.6 254 21.3
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 4.4e-06 56.6 250 25.2
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 4.4e-06 56.6 262 23.3


User provided reference genes

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