Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039748 Camellia sinensis var. sinensis HOM05D005784 ORTHO05D019705 2.2e-125 452.2 216 100.0
CSS0010884 Camellia sinensis var. sinensis HOM05D005784 ORTHO05D019705 2.2e-80 302.8 226 72.6
CSS0041482 Camellia sinensis var. sinensis HOM05D005784 ORTHO05D019705 4.1e-63 245.4 221 63.3
CSS0010584 Camellia sinensis var. sinensis HOM05D005784 ORTHO05D007803 6.9e-34 148.3 138 62.3
Rhsim01G0293700 Rhododendron simsii HOM05D005784 ORTHO05D007803 3.4e-33 146.0 138 60.9
vmacro15092 Vaccinium macrocarpon HOM05D005784 ORTHO05D007803 3.4e-33 146.0 138 60.9
FAN28G2925 Fragaria x ananassa HOM05D005784 ORTHO05D007803 1.3e-32 144.1 169 51.5
Actinidia25875 Actinidia chinensis HOM05D005784 ORTHO05D007803 8.4e-32 141.4 138 59.4
QL09p037402 Quercus lobata HOM05D005784 ORTHO05D007803 1.1e-31 141.0 138 58.7
Dinv12073 Davidia involucrata HOM05D005784 ORTHO05D007803 1.4e-31 140.6 141 57.4
Lj5g0003944 Lotus japonicus HOM05D005784 ORTHO05D007803 2.4e-31 139.8 138 57.2
TPR.G3030 Trifolium pratense HOM05D005784 ORTHO05D007803 7.1e-31 138.3 138 57.2
Psat6g157920 Pisum sativum HOM05D005784 ORTHO05D007803 9.3e-31 137.9 138 57.2
PGR042G0128 Punica granatum HOM05D005784 ORTHO05D007803 9.3e-31 137.9 138 57.2
CsaV3_5G036980 Cucumis sativus L. HOM05D005784 ORTHO05D007803 1.2e-30 137.5 138 58.0
Duzib138G0454 Durio zibethinus HOM05D005784 ORTHO05D007803 1.2e-30 137.5 138 58.0
Haze_05164 Corylus avellana HOM05D005784 ORTHO05D007803 1.6e-30 137.1 138 56.5
Cfa004924 Carpinus fangiana HOM05D000351 ORTHO05D007803 2.1e-30 136.7 138 56.5
MELO3C026475.2 Cucumis melo HOM05D005784 ORTHO05D007803 2.1e-30 136.7 138 58.0
DCAR_002944 Daucus carota HOM05D005784 ORTHO05D007803 2.1e-30 136.7 138 57.2
DCAR_005710 Daucus carota HOM05D005784 ORTHO05D007803 2.1e-30 136.7 138 57.2
arahy.Tifrunner.gnm1.ann1.7C5766 Arachis hypogaea HOM05D005784 ORTHO05D007803 2.7e-30 136.3 141 55.3
arahy.Tifrunner.gnm1.ann1.AZ9DWX Arachis hypogaea HOM05D005784 ORTHO05D007803 2.7e-30 136.3 141 55.3
FAN23G2435 Fragaria x ananassa HOM05D005784 ORTHO05D007803 2.7e-30 136.3 138 56.5
Gohir.A11G105900 Gossypium hirsutum HOM05D005784 ORTHO05D007803 2.7e-30 136.3 138 57.2
Gohir.D11G110800 Gossypium hirsutum HOM05D005784 ORTHO05D007803 2.7e-30 136.3 138 57.2
Gorai.007G118500 Gossypium raimondii HOM05D005784 ORTHO05D007803 2.7e-30 136.3 138 57.2
Lalb_Chr06g0167151 Lupinus albus HOM05D005784 ORTHO05D007803 2.7e-30 136.3 138 56.5
Potri.002G185400 Populus trichocarpa HOM05D005784 ORTHO05D007803 2.7e-30 136.3 141 56.0
Glyma.02G006500 Glycine max HOM05D005784 ORTHO05D007803 3.5e-30 136.0 141 56.0
CiPaw.08G082400 Carya illinoinensis HOM05D005784 ORTHO05D007803 4.6e-30 135.6 138 56.5
Lsat_1_v5_gn_8_167141 Lactuca sativa HOM05D005784 ORTHO05D007803 4.6e-30 135.6 141 55.3
TWI59G1466 Tripterygium wilfordii HOM05D005784 ORTHO05D007803 4.6e-30 135.6 138 57.2
Prupe.3G001200 Prunus persica HOM05D005784 ORTHO05D007803 6.0e-30 135.2 138 56.5
Glyma.10G139300 Glycine max HOM05D005784 ORTHO05D007803 7.9e-30 134.8 138 56.5
MBI18_g03858_MAGBIO Magnolia biondii HOM05D005784 ORTHO05D007803 7.9e-30 134.8 138 56.5
MD09G1291600 Malus domestica HOM05D005784 ORTHO05D007803 7.9e-30 134.8 138 55.8
HanXRQChr06g0167951 Helianthus annuus HOM05D005784 ORTHO05D007803 1.0e-29 134.4 138 56.5
Phvul.007G208100 Phaseolus vulgaris HOM05D005784 ORTHO05D007803 1.0e-29 134.4 138 56.5
Sed0007139 Sechium edule HOM05D005784 ORTHO05D007803 1.0e-29 134.4 138 56.5
VMungo0720G0010 Vigna mungo HOM05D005784 ORTHO05D007803 1.0e-29 134.4 138 55.8
Ca_10232_v3 Cicer arietinum L. HOM05D005784 ORTHO05D007803 1.3e-29 134.0 138 55.8
Cc01_g21720 Coffea canephora HOM05D005784 ORTHO05D007803 1.3e-29 134.0 138 56.5
COL.COLO4_23104 Corchorus olitorius HOM05D005784 ORTHO05D007803 1.3e-29 134.0 138 56.5
Lalb_Chr02g0147261 Lupinus albus HOM05D005784 ORTHO05D007803 1.3e-29 134.0 138 55.8
Peaxi162Scf00309g00620 Petunia axillaris HOM05D005784 ORTHO05D007803 1.3e-29 134.0 138 57.2
THA.LOC104815912 Tarenaya hassleriana HOM05D005784 ORTHO05D007803 1.3e-29 134.0 133 57.1
Thecc.01G327300 Theobroma cacao HOM05D005784 ORTHO05D007803 1.3e-29 134.0 138 56.5
Zm00001eb340520 Zea mays HOM05D005784 ORTHO05D007803 1.3e-29 134.0 138 54.3
FvH4_1g26110 Fragaria vesca HOM05D005784 ORTHO05D007803 1.8e-29 133.7 138 55.8
FAN19G2824 Fragaria x ananassa HOM05D005784 ORTHO05D007803 1.8e-29 133.7 138 55.8
FAN26G0124 Fragaria x ananassa HOM05D005784 ORTHO05D007803 1.8e-29 133.7 138 55.8
RcHm_v2.0_Chr3g0485611 Rosa chinensis HOM05D005784 ORTHO05D007803 1.8e-29 133.7 138 55.8
Solyc01g068640.3 Solanum lycopersicum HOM05D005784 ORTHO05D007803 1.8e-29 133.7 138 57.2
Sopen01g030570 Solanum pennellii HOM05D005784 ORTHO05D007803 1.8e-29 133.7 138 57.2
TAR362G0637 Trochodendron aralioides HOM05D005784 ORTHO05D007803 1.8e-29 133.7 138 56.5
TAR362G1337 Trochodendron aralioides HOM05D005784 ORTHO05D007803 1.8e-29 133.7 138 56.5
HPP92_016969 Vanilla planifolia HOM05D005784 ORTHO05D007803 1.8e-29 133.7 138 55.1
HPP92_017034 Vanilla planifolia HOM05D005784 ORTHO05D007803 1.8e-29 133.7 138 55.1
EL10Ac1g01825 Beta vulgaris HOM05D005784 ORTHO05D007803 2.3e-29 133.3 138 55.1
Duzib133G0630 Durio zibethinus HOM05D005784 ORTHO05D007803 2.3e-29 133.3 138 56.5
Nitab4.5_0003092g0090 Nicotiana tabacum HOM05D005784 ORTHO05D007803 2.3e-29 133.3 138 56.5
Nitab4.5_0008825g0010 Nicotiana tabacum HOM05D005784 ORTHO05D007803 2.3e-29 133.3 138 56.5
MSTRG.18053 Avicennia marina HOM05D005784 ORTHO05D007803 3.0e-29 132.9 138 55.8
Manes.05G007100 Manihot esculenta HOM05D005784 ORTHO05D007803 3.0e-29 132.9 138 55.8
ATR0693G326 Amborella trichopoda HOM05D005784 ORTHO05D007803 3.9e-29 132.5 138 55.8
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 3.9e-29 132.5 138 55.8
Nn4g25319 Nelumbo nucifera HOM05D005784 ORTHO05D007803 3.9e-29 132.5 138 56.5
Sc05g0000040 Simmondsia chinensis HOM05D005784 ORTHO05D007803 6.7e-29 131.7 138 55.1
GSVIVG01028229001 Vitis vinifera HOM05D005784 ORTHO05D007803 6.7e-29 131.7 141 53.2
Eucgr.A00993 Eucalyptus grandis HOM05D005784 ORTHO05D007803 8.7e-29 131.3 138 55.1
Medtr1g085610 Medicago truncatula HOM05D005784 ORTHO05D007803 1.1e-28 131.0 138 55.1
Aqoxy2G02413 Aquilegia oxysepala HOM05D005784 ORTHO05D007803 1.5e-28 130.6 141 53.2
Aqoxy5G02861 Aquilegia oxysepala HOM05D005784 ORTHO05D007803 1.9e-28 130.2 138 55.1
Ciclev10019335m.g Citrus clementina HOM05D005784 ORTHO05D007803 1.9e-28 130.2 138 55.1
CANSAT25G3716 Cannabis sativa HOM05D005784 ORTHO05D007803 2.5e-28 129.8 138 55.1
SHI19972 Sapria himalayana HOM05D005784 ORTHO05D000023 3.3e-28 129.4 140 53.6
unitig_90.g27449 Utricularia gibba HOM05D001090 ORTHO05D007803 3.3e-28 129.4 138 54.3
AUR62043318 Chenopodium quinoa HOM05D005784 ORTHO05D007803 4.3e-28 129.0 133 55.6
Migut.N00893 Erythranthe guttata HOM05D005784 ORTHO05D007803 4.3e-28 129.0 138 55.1
SGA_v2.0_scaffold417G51242 Striga asiatica HOM05D005784 ORTHO05D007803 5.6e-28 128.6 138 54.3
PSO170G5067 Papaver somniferum HOM05D005784 ORTHO05D007803 1.3e-27 127.5 138 54.3
PSO357G0013 Papaver somniferum HOM05D005784 ORTHO05D007803 1.3e-27 127.5 138 54.3
Atru.chr5.839 Acer truncatum HOM05D005784 ORTHO05D007803 1.6e-27 127.1 138 53.6
CDE09G0629 Ceratophyllum demersum HOM05D005784 ORTHO05D007803 4.8e-27 125.6 138 52.2
Mapoly0064s0089 Marchantia polymorpha HOM05D005784 ORTHO05D007803 1.4e-26 124.0 138 49.3
SEGI_05697 Sequoiadendron giganteum HOM05D005784 ORTHO05D007803 1.4e-26 124.0 141 52.5
BolC9t53062H Brassica oleracea HOM05D005784 ORTHO05D007803 4.0e-26 122.5 137 51.8
A09p01190 Brassica napus HOM05D005784 ORTHO05D007803 5.3e-26 122.1 137 51.8
BraA09t35789Z Brassica rapa HOM05D005784 ORTHO05D007803 5.3e-26 122.1 137 51.8
BcaB01g02124 Brassica carinata HOM05D005784 ORTHO05D007803 9.0e-26 121.3 137 51.1
BcaC04g24079 Brassica carinata HOM05D005784 ORTHO05D007803 1.2e-25 120.9 137 51.8
C09p01280 Brassica napus HOM05D005784 ORTHO05D007803 1.2e-25 120.9 137 51.8
Carub.0006s3555 Capsella rubella HOM05D005784 ORTHO05D007803 2.6e-25 119.8 137 51.1
Aa31LG5G1370 Aethionema arabicum HOM05D005784 ORTHO05D007803 3.4e-25 119.4 138 50.7
AL6G51690 Arabidopsis lyrata HOM05D005784 ORTHO05D007803 3.4e-25 119.4 133 51.9
Sp6g01550 Schrenkiella parvula HOM05D005784 ORTHO05D007803 4.5e-25 119.0 137 51.1
Oeu052593.2 Olea europaea HOM05D005784 ORTHO05D007803 5.8e-25 118.6 246 37.4
Thhalv10028510m.g Eutrema salsugineum HOM05D005784 ORTHO05D007803 9.9e-25 117.9 137 51.1
CARHR250010 Cardamine hirsuta HOM05D005784 ORTHO05D007803 1.3e-24 117.5 137 50.4
AT4G01660 Arabidopsis thaliana HOM05D005784 ORTHO05D007803 2.9e-24 116.3 133 51.1
SMO146G0128 Selaginella moellendorffii HOM05D005784 ORTHO05D007803 1.1e-23 114.4 138 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4566 Anthoceros agrestis HOM05D005784 ORTHO05D007803 4.2e-23 112.5 138 48.6
Pp3c6_18430 Physcomitrium patens HOM05D005784 ORTHO05D007803 1.2e-22 110.9 138 47.8
Cre10.g429800 Chlamydomonas reinhardtii HOM05D005784 ORTHO05D007803 1.8e-21 107.1 132 48.5
Migut.D00007 Erythranthe guttata HOM05D005784 ORTHO05D007803 2.3e-21 106.7 121 52.9
CAN.G179.27 Capsicum annuum HOM05D005784 ORTHO05D007803 3.0e-21 106.3 124 52.4
DCAR_005399 Daucus carota HOM05D005784 ORTHO05D007803 8.7e-21 104.8 134 49.3
Cpa.g.sc57.41 Carica papaya HOM05D005784 ORTHO05D007803 7.4e-20 101.7 56 87.5
MCO09G446 Micromonas commoda HOM05D005784 ORTHO05D007803 2.8e-19 99.8 132 44.7
Migut.N00895 Erythranthe guttata HOM05D005784 ORTHO05D007803 1.0e-16 91.3 137 43.8
AUR62035184 Chenopodium quinoa HOM05D005784 ORTHO05D007803 1.3e-16 90.9 51 86.3
CDE09G1340 Ceratophyllum demersum HOM05D005784 ORTHO05D007803 5.5e-15 85.5 51 80.4
ClCG11G000360 Citrullus lanatus HOM05D005784 ORTHO05D007803 5.5e-15 85.5 110 49.1
Haze_26301 Corylus avellana HOM05D005784 ORTHO05D007803 7.1e-15 85.1 138 37.0
PRCOL_00004655 Prasinoderma coloniale HOM05D005784 ORTHO05D007803 1.2e-14 84.3 132 38.6
Cfa022580 Carpinus fangiana HOM05D005784 ORTHO05D007803 3.0e-13 79.7 135 39.3
Cpa.g.sc57.42 Carica papaya HOM05D005784 ORTHO05D007803 6.3e-11 72.0 60 65.0
Migut.N00894 Erythranthe guttata HOM05D005784 ORTHO05D007803 9.0e-10 68.2 42 71.4
CiPaw.07G126900 Carya illinoinensis HOM05D005784 ORTHO05D019705 1.0e-08 64.7 34 82.4
CBR_g37217 Chara braunii HOM05D005784 ORTHO05D007803 1.0e-08 64.7 52 59.6


User provided reference genes

Program Settings