Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.6e-211 738.4 366 100.0
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 2.6e-211 738.4 366 100.0
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 9.0e-119 431.0 372 65.9
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 1.3e-117 427.2 372 65.6
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 5.5e-116 421.8 376 62.8
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 6.0e-115 418.3 362 66.0
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 4.8e-112 408.7 374 61.8
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 1.2e-107 394.0 380 62.4
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 3.9e-106 389.0 368 61.4
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 5.1e-106 388.7 373 59.5
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 5.7e-105 385.2 381 59.1
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 6.3e-104 381.7 372 60.5
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 1.0e-101 374.4 370 61.1
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 1.1e-100 370.9 375 58.1
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 9.3e-100 367.9 372 58.1
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 1.6e-99 367.1 369 58.5
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 3.6e-99 365.9 350 60.6
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 1.8e-98 363.6 391 56.5
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.9e-97 360.1 392 56.1
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 3.3e-97 359.4 395 55.9
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 3.3e-97 359.4 387 57.4
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 5.7e-97 358.6 391 56.3
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 9.7e-97 357.8 376 56.6
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 6.3e-96 355.1 385 55.8
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 1.1e-95 354.4 365 58.1
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.2e-94 350.9 391 54.5
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 2.2e-93 346.7 348 60.1
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.2e-93 346.7 376 54.0
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 5.0e-93 345.5 376 54.0
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 6.5e-93 345.1 389 55.5
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 7.2e-92 341.7 376 57.7
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 1.6e-91 340.5 387 56.6
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 2.1e-91 340.1 368 57.3
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 1.8e-90 337.0 362 55.8
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 3.3e-89 332.8 386 53.9
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 2.0e-86 323.6 385 54.3
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.5e-86 322.4 367 52.3
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 5.9e-86 322.0 390 51.3
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 1.7e-85 320.5 363 53.4
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 2.2e-85 320.1 361 53.2
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 3.2e-84 316.2 381 53.3
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 7.2e-84 315.1 385 51.9
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.6e-83 313.9 383 52.0
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 1.6e-83 313.9 370 51.4
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 2.7e-83 313.2 371 52.0
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 3.6e-83 312.8 372 51.6
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 4.7e-83 312.4 372 51.6
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 6.1e-83 312.0 365 54.5
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 1.1e-81 307.8 394 51.8
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 2.6e-81 306.6 384 52.1
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 2.4e-79 300.1 356 52.0
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 4.1e-79 299.3 357 51.8
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 4.1e-79 299.3 377 49.9
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 5.3e-79 298.9 361 53.7
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 3.5e-78 296.2 388 51.5
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 4.5e-78 295.8 368 51.1
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 5.9e-78 295.4 390 48.5
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 7.7e-78 295.0 362 51.9
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 8.5e-77 291.6 371 48.5
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 1.1e-76 291.2 366 51.6
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 1.9e-76 290.4 376 49.2
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 5.5e-76 288.9 377 50.1
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 1.2e-75 287.7 380 48.4
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 3.6e-75 286.2 366 49.5
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 3.6e-75 286.2 362 50.3
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 1.4e-74 284.3 381 49.1
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 2.3e-74 283.5 366 48.9
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 2.6e-73 280.0 440 45.0
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 3.3e-73 279.6 367 49.0
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 4.4e-73 279.3 380 48.4
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 9.7e-73 278.1 367 49.0
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 2.2e-72 276.9 367 48.8
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 2.2e-72 276.9 386 47.9
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 2.8e-72 276.6 375 46.9
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.4e-71 273.5 370 47.3
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 9.1e-71 271.6 367 46.9
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 9.1e-71 271.6 360 46.9
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 1.2e-70 271.2 360 46.7
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 2.0e-70 270.4 403 45.2
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 7.7e-70 268.5 371 47.4
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 7.7e-70 268.5 360 48.9
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 1.0e-69 268.1 367 46.3
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 2.9e-69 266.5 371 47.2
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 7.2e-68 261.9 367 46.3
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 9.4e-68 261.5 370 45.7
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 4.7e-67 259.2 431 42.2
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 5.2e-66 255.8 334 49.7
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 1.2e-65 254.6 369 45.3
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 1.5e-65 254.2 364 46.7
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 3.7e-64 249.6 355 46.2
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 2.4e-63 246.9 421 42.5
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.1e-63 246.1 382 44.0
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 1.3e-61 241.1 373 44.5
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.5e-60 237.7 266 56.4
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 2.5e-60 236.9 386 43.0
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 2.5e-60 236.9 403 42.7
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 4.2e-60 236.1 379 43.3
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 1.0e-58 231.5 375 43.2
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.0e-58 231.5 294 52.4
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.8e-58 230.7 190 65.3
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 1.5e-57 227.6 356 44.9
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 6.3e-56 222.2 359 44.0
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.4e-55 221.1 362 41.2
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 7.8e-54 215.3 266 50.8
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 2.5e-52 210.3 298 48.3
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 4.7e-51 206.1 361 41.8
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 3.0e-50 203.4 373 40.2
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 9.8e-49 198.4 379 39.6
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 8.3e-48 195.3 382 40.1
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 3.2e-47 193.4 190 56.8
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 1.6e-46 191.0 199 55.3
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 6.6e-45 185.7 202 52.0
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 5.6e-44 182.6 347 39.2
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 9.5e-44 181.8 362 36.2
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.6e-43 181.0 206 50.5
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 4.0e-42 176.4 355 38.0
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 6.8e-42 175.6 290 43.8
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 1.5e-41 174.5 365 36.2
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 8.3e-40 168.7 127 60.6
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 9.2e-39 165.2 191 51.3
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 1.2e-38 164.9 354 35.6
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 8.6e-37 158.7 262 40.8
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 1.6e-35 154.5 120 69.2
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 2.9e-32 143.7 360 35.0
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 4.1e-31 139.8 248 43.5
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 3.9e-29 133.3 189 44.4
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 5.1e-21 106.3 313 34.8
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 4.3e-20 103.2 117 53.8
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 4.0e-18 96.7 172 39.0
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 8.9e-18 95.5 161 39.1
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.2e-17 95.1 172 34.9
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 1.5e-17 94.7 112 52.7
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.0e-17 94.4 168 35.1
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 2.0e-17 94.4 165 35.2
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 4.9e-16 89.7 173 36.4
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 8.4e-16 89.0 159 37.1
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 6.0e-14 82.8 90 45.6
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 2.4e-10 70.9 359 24.8
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 3.2e-07 60.5 100 46.0


User provided reference genes

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