Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 7.7e-92 340.5 177 100.0
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 7.7e-84 313.9 148 98.6
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 8.3e-62 240.7 149 75.2
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 1.3e-59 233.4 134 81.3
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 3.0e-59 232.3 144 74.3
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 5.1e-59 231.5 146 73.3
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 8.6e-59 230.7 133 78.2
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 8.6e-59 230.7 142 73.2
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 1.9e-58 229.6 133 79.7
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 4.3e-58 228.4 124 80.6
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 5.6e-58 228.0 129 79.8
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 1.2e-57 226.9 126 78.6
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 2.8e-57 225.7 147 70.1
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 2.8e-57 225.7 146 69.2
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 2.8e-57 225.7 144 70.8
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 6.2e-57 224.6 134 74.6
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 8.1e-57 224.2 126 81.0
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 1.4e-56 223.4 131 75.6
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.4e-56 223.4 133 73.7
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 1.8e-56 223.0 136 71.3
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 2.3e-56 222.6 121 81.0
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 5.2e-56 221.5 131 74.8
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 8.9e-56 220.7 121 81.0
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 8.9e-56 220.7 125 76.0
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 8.9e-56 220.7 135 73.3
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 1.2e-55 220.3 145 73.1
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 5.8e-55 218.0 146 64.4
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 5.8e-55 218.0 125 75.2
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 5.8e-55 218.0 127 76.4
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 9.9e-55 217.2 137 72.3
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.3e-54 216.9 125 74.4
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 1.7e-54 216.5 128 79.7
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 1.7e-54 216.5 137 70.8
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 3.7e-54 215.3 126 74.6
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 4.9e-54 214.9 133 73.7
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 6.4e-54 214.5 122 75.4
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 6.4e-54 214.5 135 69.6
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 8.3e-54 214.2 147 68.7
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.1e-53 213.8 132 72.7
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 4.1e-53 211.8 129 74.4
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 7.1e-53 211.1 123 74.8
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 9.2e-53 210.7 147 66.0
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 1.2e-52 210.3 130 70.8
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 1.6e-52 209.9 126 73.0
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 1.6e-52 209.9 146 66.4
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 1.6e-52 209.9 144 67.4
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 2.7e-52 209.1 131 71.8
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.7e-52 209.1 146 67.8
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 2.7e-52 209.1 147 65.3
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 4.6e-52 208.4 118 75.4
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 6.0e-52 208.0 136 66.2
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 6.0e-52 208.0 147 65.3
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 7.8e-52 207.6 146 63.7
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 7.8e-52 207.6 148 65.5
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 1.0e-51 207.2 145 66.2
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 1.0e-51 207.2 133 69.9
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.7e-51 206.5 130 68.5
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 3.0e-51 205.7 127 71.7
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 5.1e-51 204.9 137 67.2
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 5.1e-51 204.9 128 71.9
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 6.6e-51 204.5 127 70.9
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 1.1e-50 203.8 130 68.5
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 1.5e-50 203.4 144 68.8
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.5e-50 203.4 123 74.0
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.5e-50 202.6 116 75.0
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 2.8e-49 199.1 150 61.3
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 3.6e-49 198.7 148 66.9
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 8.1e-49 197.6 143 67.8
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 1.8e-48 196.4 119 73.1
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 2.4e-48 196.1 140 64.3
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 5.2e-48 194.9 144 63.2
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 6.8e-48 194.5 122 68.0
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 6.8e-48 194.5 125 67.2
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 1.5e-47 193.4 143 62.9
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 2.0e-47 193.0 122 65.6
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 2.0e-47 193.0 124 70.2
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 2.0e-47 193.0 124 70.2
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 3.4e-47 192.2 132 65.2
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 5.8e-47 191.4 125 65.6
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 5.8e-47 191.4 129 65.1
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 9.9e-47 190.7 124 64.5
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 9.9e-47 190.7 122 66.4
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.3e-46 190.3 122 65.6
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 2.2e-46 189.5 125 69.6
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 2.9e-46 189.1 126 62.7
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 3.8e-46 188.7 129 64.3
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 4.9e-46 188.3 122 63.1
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 4.9e-46 188.3 122 65.6
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 4.9e-46 188.3 122 65.6
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 6.4e-46 188.0 118 71.2
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 8.4e-46 187.6 122 63.9
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 8.4e-46 187.6 122 64.8
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 8.4e-46 187.6 122 64.8
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 8.4e-46 187.6 147 63.9
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 8.4e-46 187.6 128 64.8
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 3.2e-45 185.7 122 63.9
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 7.1e-45 184.5 124 62.9
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 3.9e-43 178.7 109 68.8
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 5.6e-42 174.9 127 65.4
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 2.1e-41 172.9 157 50.3
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 1.2e-36 157.1 101 71.3
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 1.8e-32 143.3 124 58.9
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.2e-31 140.6 82 78.0
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 4.5e-31 138.7 117 55.6
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 5.8e-31 138.3 95 63.2
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 3.8e-30 135.6 122 52.5
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 3.5e-28 129.0 114 50.0
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 2.3e-27 126.3 73 76.7
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 9.6e-26 120.9 74 70.3
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 9.6e-26 120.9 143 48.3
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 6.9e-24 114.8 121 50.4
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 9.0e-24 114.4 96 52.1
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 1.7e-22 110.2 89 53.9
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 2.2e-22 109.8 125 45.6
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 6.5e-22 108.2 89 49.4
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 8.4e-22 107.8 89 52.8
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 2.7e-20 102.8 93 45.2
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 6.0e-20 101.7 99 49.5
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 4.1e-16 89.0 91 45.1
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 5.3e-16 88.6 99 40.4
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 2.1e-12 76.6 67 50.7
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 2.7e-12 76.3 54 63.0
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.8e-11 73.6 46 69.6
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 6.3e-09 65.1 73 45.2
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 1.1e-08 64.3 40 70.0
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.4e-08 63.9 40 67.5
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 5.9e-07 58.5 37 64.9
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 1.3e-06 57.4 39 64.1


User provided reference genes

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