Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039740 Camellia sinensis var. sinensis HOM05D009264 ORTHO05D009202 8.0e-44 180.3 106 100.0
CSS0022072 Camellia sinensis var. sinensis HOM05D009264 ORTHO05D009202 4.4e-42 174.5 107 98.1
Actinidia01668 Actinidia chinensis HOM05D009264 ORTHO05D009202 3.2e-16 88.6 86 59.3
RcHm_v2.0_Chr3g0457951 Rosa chinensis HOM05D009264 ORTHO05D009202 1.9e-13 79.3 116 49.1
Actinidia35505 Actinidia chinensis HOM05D009264 ORTHO05D009202 9.5e-13 77.0 97 50.5
Actinidia16886 Actinidia chinensis HOM05D009264 ORTHO05D009202 2.3e-11 72.4 118 44.1
CiPaw.08G152800 Carya illinoinensis HOM05D009264 ORTHO05D009202 5.2e-11 71.2 122 45.9
Potri.005G006000 Populus trichocarpa HOM05D014622 ORTHO05D009202 1.5e-10 69.7 93 51.6
CSS0006203 Camellia sinensis var. sinensis HOM05D009264 ORTHO05D009202 2.6e-10 68.9 120 44.2
Aqoxy2G02597 Aquilegia oxysepala HOM05D009264 ORTHO05D009202 9.9e-10 67.0 118 39.8
Medtr7g111770 Medicago truncatula HOM05D011874 ORTHO05D009202 1.7e-09 66.2 96 46.9
Phvul.007G211500 Phaseolus vulgaris HOM05D024167 ORTHO05D009202 4.9e-09 64.7 111 39.6
Thecc.05G327000 Theobroma cacao HOM05D021022 ORTHO05D009202 1.4e-08 63.2 98 53.1
FvH4_6g08100 Fragaria vesca HOM05D009264 ORTHO05D009202 2.4e-08 62.4 113 43.4
FAN14G2966 Fragaria x ananassa HOM05D009264 ORTHO05D009202 2.4e-08 62.4 113 43.4
QL12p033984 Quercus lobata HOM05D008942 ORTHO05D009202 2.4e-08 62.4 127 36.2
CiPaw.07G033300 Carya illinoinensis HOM05D009264 ORTHO05D009202 4.1e-08 61.6 124 41.1
CiPaw.07G122200 Carya illinoinensis HOM05D008942 ORTHO05D009202 4.1e-08 61.6 119 37.8
Potri.005G006200 Populus trichocarpa HOM05D014622 ORTHO05D009202 5.4e-08 61.2 124 42.7
QL03p008780 Quercus lobata HOM05D009264 ORTHO05D009202 5.4e-08 61.2 63 52.4
QL03p013046 Quercus lobata HOM05D009264 ORTHO05D009202 5.4e-08 61.2 63 52.4
Thecc.01G321000 Theobroma cacao HOM05D008942 ORTHO05D009202 5.4e-08 61.2 123 38.2
Duzib128G1262 Durio zibethinus HOM05D021022 ORTHO05D009202 9.2e-08 60.5 97 51.5
FAN09G1104 Fragaria x ananassa HOM05D009264 ORTHO05D009202 9.2e-08 60.5 113 44.2
Glyma.19G226800 Glycine max HOM05D011874 ORTHO05D009202 9.2e-08 60.5 84 47.6
Hma1.2p1_0052F.1_g030560 Hydrangea macrophylla HOM05D009264 ORTHO05D009202 1.2e-07 60.1 136 40.4
VMungo1383G0753 Vigna mungo HOM05D011874 ORTHO05D009202 1.6e-07 59.7 140 37.9
SalBow7G0413 Salvia bowleyana HOM05D009264 ORTHO05D009202 2.1e-07 59.3 114 39.5
Nn4g25438 Nelumbo nucifera HOM05D008942 ORTHO05D009202 2.7e-07 58.9 88 46.6
Sabra14G0085900 Salix brachista HOM05D008942 ORTHO05D009202 2.7e-07 58.9 123 38.2
CiPaw.08G085100 Carya illinoinensis HOM05D008942 ORTHO05D009202 3.5e-07 58.5 132 40.2
Glyma.03G229500 Glycine max HOM05D011874 ORTHO05D009202 4.6e-07 58.2 80 46.2
QL12p033964 Quercus lobata HOM05D008942 ORTHO05D009202 4.6e-07 58.2 119 39.5
Phvul.001G223400 Phaseolus vulgaris HOM05D011874 ORTHO05D009202 6.0e-07 57.8 106 36.8
Lj1g0011687 Lotus japonicus HOM05D011874 ORTHO05D009202 7.8e-07 57.4 106 41.5
Potri.013G005300 Populus trichocarpa HOM05D014622 ORTHO05D009202 7.8e-07 57.4 120 40.8
TAR633G2549 Trochodendron aralioides HOM05D009264 ORTHO05D009202 7.8e-07 57.4 113 46.0
Oeu016555.1 Olea europaea HOM05D038384 ORTHO05D009202 1.3e-06 56.6 63 47.6
Oeu016561.1 Olea europaea HOM05D038384 ORTHO05D009202 1.3e-06 56.6 63 47.6
Cfa006734 Carpinus fangiana HOM05D009264 ORTHO05D009202 1.7e-06 56.2 106 38.7
PGR083G1195 Punica granatum HOM05D009264 ORTHO05D009202 2.3e-06 55.8 120 36.7
CiPaw.07G033600 Carya illinoinensis HOM05D009264 ORTHO05D009202 3.9e-06 55.1 114 36.8
VMungo0720G1850 Vigna mungo HOM05D024167 ORTHO05D009202 3.9e-06 55.1 107 36.4
Gorai.004G146500 Gossypium raimondii HOM05D008942 ORTHO05D009202 8.6e-06 53.9 126 34.9
Sabra02G0164800 Salix brachista HOM05D008942 ORTHO05D009202 8.6e-06 53.9 126 34.9


User provided reference genes

Program Settings