Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.8e-155 552.0 289 100.0
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 8.3e-152 540.4 289 95.5
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.2e-150 536.6 289 95.2
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 6.8e-146 520.8 278 95.3
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 4.0e-114 415.2 288 75.0
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 2.8e-107 392.5 288 74.0
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.9e-100 369.8 289 68.2
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 8.2e-99 364.4 292 68.5
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 5.3e-98 361.7 287 67.2
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 6.9e-98 361.3 290 66.9
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 3.4e-97 359.0 290 67.9
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.7e-96 356.7 268 69.4
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 3.8e-96 355.5 230 76.5
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 7.1e-95 351.3 283 67.1
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 1.2e-94 350.5 239 74.1
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 1.6e-94 350.1 286 67.5
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 2.1e-94 349.7 236 75.0
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 2.1e-94 349.7 211 82.5
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 2.7e-94 349.4 286 64.0
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 2.7e-94 349.4 280 67.5
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.7e-94 349.4 223 77.6
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 4.6e-94 348.6 287 67.2
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 4.6e-94 348.6 240 72.5
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 6.0e-94 348.2 226 77.0
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 6.0e-94 348.2 264 67.8
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.0e-93 347.4 242 71.5
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 3.9e-93 345.5 287 65.2
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 5.1e-93 345.1 288 65.3
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 8.7e-93 344.4 210 81.0
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.1e-92 344.0 223 78.0
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 1.1e-92 344.0 297 63.0
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 2.5e-92 342.8 279 65.2
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 3.3e-92 342.4 238 75.2
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.3e-92 342.0 264 67.8
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 7.4e-92 341.3 289 64.0
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 9.7e-92 340.9 236 73.3
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.3e-91 340.5 284 62.7
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 1.3e-91 340.5 289 63.7
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.6e-91 340.1 230 74.3
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 2.2e-91 339.7 289 64.4
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.1e-90 337.4 265 67.9
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 1.1e-90 337.4 292 64.0
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 1.4e-90 337.0 227 72.7
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 1.4e-90 337.0 207 79.2
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 2.4e-90 336.3 233 73.8
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 5.3e-90 335.1 265 66.4
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 9.0e-90 334.3 274 62.8
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 1.2e-89 334.0 286 65.0
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 2.6e-89 332.8 242 70.7
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 3.4e-89 332.4 265 66.0
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 4.5e-89 332.0 210 79.5
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 1.7e-88 330.1 239 71.5
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 2.9e-88 329.3 260 65.8
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 6.5e-88 328.2 200 81.5
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 6.5e-88 328.2 291 61.2
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 8.5e-88 327.8 209 78.0
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 2.5e-87 326.2 291 61.5
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 2.5e-87 326.2 291 61.5
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 3.2e-87 325.9 199 81.4
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 5.5e-87 325.1 240 69.6
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 7.2e-87 324.7 213 77.0
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.2e-86 323.9 232 70.7
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 1.6e-86 323.6 278 64.0
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 2.7e-86 322.8 262 64.5
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 3.6e-86 322.4 226 72.6
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 4.6e-86 322.0 280 62.1
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 6.1e-86 321.6 243 69.1
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 7.9e-86 321.2 199 79.9
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.4e-85 320.5 235 71.1
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 1.8e-85 320.1 278 61.2
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 1.8e-85 320.1 199 80.9
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 5.1e-85 318.5 199 79.9
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 5.1e-85 318.5 210 75.2
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.1e-85 318.5 274 62.4
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 5.1e-85 318.5 231 70.6
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 5.1e-85 318.5 284 63.7
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 8.8e-85 317.8 243 69.1
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 2.0e-84 316.6 245 67.8
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 2.0e-84 316.6 233 68.2
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 2.5e-84 316.2 221 72.9
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 2.5e-84 316.2 208 78.8
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 3.3e-84 315.8 214 75.2
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 5.7e-84 315.1 200 77.5
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 5.7e-84 315.1 210 76.7
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 2.2e-83 313.2 210 75.7
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 2.8e-83 312.8 225 70.7
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 6.3e-83 311.6 216 72.7
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 8.2e-83 311.2 246 68.7
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 8.2e-83 311.2 234 67.1
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.8e-82 310.1 212 75.9
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 1.8e-82 310.1 216 73.6
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 4.1e-82 308.9 281 58.4
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 5.3e-82 308.5 201 78.6
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 6.9e-82 308.1 177 85.3
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.5e-81 307.0 243 69.1
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.0e-81 306.6 182 85.2
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 2.6e-81 306.2 201 78.1
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 2.6e-81 306.2 201 78.1
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 3.4e-81 305.8 235 71.1
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 3.4e-81 305.8 237 70.9
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 3.4e-81 305.8 222 72.1
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 4.5e-81 305.4 283 62.2
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 4.5e-81 305.4 288 60.1
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 7.7e-81 304.7 204 76.0
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 1.0e-80 304.3 243 68.7
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.0e-80 304.3 227 69.6
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.7e-80 303.5 183 85.8
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 2.2e-80 303.1 177 85.3
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 5.5e-79 298.5 283 61.8
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.7e-78 295.4 193 75.6
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 6.1e-78 295.0 193 77.7
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 2.3e-77 293.1 212 70.8
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 3.9e-77 292.4 221 68.3
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.3e-75 287.3 202 71.8
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 6.3e-75 285.0 198 70.7
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 8.2e-75 284.6 250 62.8
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 8.2e-75 284.6 207 69.6
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 2.4e-74 283.1 200 71.0
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 2.5e-71 273.1 205 67.3
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 3.2e-71 272.7 184 77.2
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 2.7e-70 269.6 234 61.1
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 3.6e-70 269.2 179 73.7
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 2.4e-66 256.5 238 56.3
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 7.0e-66 255.0 237 57.4
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 5.9e-65 251.9 165 73.9
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 5.9e-65 251.9 165 73.9
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 1.7e-64 250.4 288 53.1
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 6.1e-62 241.9 234 53.4
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 8.0e-62 241.5 216 62.5
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 2.2e-59 233.4 169 73.4
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 4.1e-58 229.2 183 65.0
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 8.0e-54 214.9 238 52.1
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 1.1e-50 204.5 131 74.8
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 4.1e-50 202.6 190 60.5
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 6.8e-45 185.3 111 81.1
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.7e-43 180.6 202 46.5
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 3.7e-43 179.5 112 79.5
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.0e-41 173.7 178 51.1
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 9.5e-39 164.9 93 84.9
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 2.3e-37 160.2 233 45.5
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.0e-33 147.1 211 46.0
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.0e-33 147.1 88 79.5
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.6e-25 120.9 210 35.2
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.6e-25 120.9 156 42.9
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 4.6e-25 119.4 214 38.3
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 4.6e-25 119.4 149 47.7
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 2.5e-23 113.6 70 77.1
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 3.3e-23 113.2 146 44.5
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.1e-21 108.2 205 35.6
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 7.6e-20 102.1 202 34.7
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 6.4e-19 99.0 143 39.9
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 3.6e-14 83.2 66 60.6
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 6.2e-14 82.4 65 60.0
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 7.6e-12 75.5 113 45.1
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.7e-08 64.3 36 86.1
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 6.6e-08 62.4 67 56.7
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 6.2e-06 55.8 152 30.9


User provided reference genes

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