Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039715 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 1.6e-69 266.2 154 100.0
CSS0030634 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 1.1e-14 84.0 149 43.6
CSS0000986 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 7.3e-14 81.3 149 42.3
CiPaw.12G033600 Carya illinoinensis HOM05D007328 ORTHO05D009246 2.2e-10 69.7 39 92.3
PGR044G2544 Punica granatum HOM05D007328 ORTHO05D009246 3.8e-10 68.9 39 89.7
Dinv38499 Davidia involucrata HOM05D007328 ORTHO05D009246 4.9e-10 68.6 149 38.3
COL.COLO4_19806 Corchorus olitorius HOM05D007328 ORTHO05D009246 6.4e-10 68.2 39 89.7
QL10p005926 Quercus lobata HOM05D007328 ORTHO05D009246 1.1e-09 67.4 38 86.8
vmacro16689 Vaccinium macrocarpon HOM05D007328 ORTHO05D009246 1.1e-09 67.4 103 42.7
Duzib205G1420 Durio zibethinus HOM05D007328 ORTHO05D009246 1.4e-09 67.0 106 43.4
TAR629G2292 Trochodendron aralioides HOM05D007328 ORTHO05D009246 1.9e-09 66.6 39 84.6
ATR0199G045 Amborella trichopoda HOM05D007328 ORTHO05D009246 2.4e-09 66.2 39 87.2
Sed0026647 Sechium edule HOM05D007328 ORTHO05D009246 2.4e-09 66.2 39 82.1
ClCG06G017550 Citrullus lanatus HOM05D007328 ORTHO05D009246 3.2e-09 65.9 39 82.1
FAN18G0524 Fragaria x ananassa HOM05D007328 ORTHO05D009246 3.2e-09 65.9 38 89.5
RcHm_v2.0_Chr7g0191941 Rosa chinensis HOM05D007328 ORTHO05D009246 3.2e-09 65.9 38 89.5
Actinidia08840 Actinidia chinensis HOM05D007328 ORTHO05D009246 4.2e-09 65.5 39 79.5
CAN.G126.95 Capsicum annuum HOM05D007328 ORTHO05D009246 4.2e-09 65.5 106 43.4
ECA246G4123 Erigeron canadensis HOM05D007328 ORTHO05D009246 4.2e-09 65.5 39 87.2
Prupe.5G161600 Prunus persica HOM05D007328 ORTHO05D009246 4.2e-09 65.5 38 86.8
Thecc.03G118600 Theobroma cacao HOM05D007328 ORTHO05D009246 4.2e-09 65.5 39 84.6
GSVIVG01007592001 Vitis vinifera HOM05D007328 ORTHO05D009246 4.2e-09 65.5 39 84.6
Haze_07631 Corylus avellana HOM05D007328 ORTHO05D009246 5.5e-09 65.1 103 41.7
CsaV3_1G000900 Cucumis sativus L. HOM05D007328 ORTHO05D009246 5.5e-09 65.1 104 41.3
AUR62001234 Chenopodium quinoa HOM05D007328 ORTHO05D009246 7.1e-09 64.7 39 79.5
Manes.06G112300 Manihot esculenta HOM05D007328 ORTHO05D009246 7.1e-09 64.7 39 82.1
Atru.chr9.1808 Acer truncatum HOM05D007328 ORTHO05D009246 9.3e-09 64.3 39 82.1
Ciclev10022963m.g Citrus clementina HOM05D007328 ORTHO05D009246 9.3e-09 64.3 149 36.2
DCAR_007459 Daucus carota HOM05D007328 ORTHO05D009246 9.3e-09 64.3 39 82.1
Solyc03g111790.4 Solanum lycopersicum HOM05D007328 ORTHO05D009246 9.3e-09 64.3 39 82.1
Sopen03g030890 Solanum pennellii HOM05D007328 ORTHO05D009246 9.3e-09 64.3 39 82.1
PGSC0003DMG400015227 Solanum tuberosum HOM05D007328 ORTHO05D009246 9.3e-09 64.3 39 82.1
CANSAT80G1532 Cannabis sativa HOM05D007328 ORTHO05D009246 1.2e-08 63.9 39 82.1
FvH4_5g06690 Fragaria vesca HOM05D007328 ORTHO05D009246 1.2e-08 63.9 38 86.8
FAN04G3262 Fragaria x ananassa HOM05D007328 ORTHO05D009246 1.2e-08 63.9 38 86.8
FAN13G1360 Fragaria x ananassa HOM05D007328 ORTHO05D009246 1.2e-08 63.9 38 86.8
Nitab4.5_0000510g0070 Nicotiana tabacum HOM05D007328 ORTHO05D009246 1.2e-08 63.9 39 82.1
Nitab4.5_0003542g0010 Nicotiana tabacum HOM05D007328 ORTHO05D009246 1.2e-08 63.9 39 82.1
Rhsim12G0170200 Rhododendron simsii HOM05D007328 ORTHO05D009246 1.2e-08 63.9 103 40.8
SGA_v2.0_scaffold7G04170 Striga asiatica HOM05D007328 ORTHO05D009246 1.2e-08 63.9 39 82.1
Sc04g0001180 Simmondsia chinensis HOM05D007328 ORTHO05D009246 1.6e-08 63.5 106 40.6
Duzib068G0271 Durio zibethinus HOM05D007328 ORTHO05D009246 2.1e-08 63.2 39 82.1
FAN08G2248 Fragaria x ananassa HOM05D007328 ORTHO05D009246 2.1e-08 63.2 103 45.6
Gohir.A09G244400 Gossypium hirsutum HOM05D007328 ORTHO05D009246 2.1e-08 63.2 106 40.6
Gorai.006G269700 Gossypium raimondii HOM05D007328 ORTHO05D009246 2.1e-08 63.2 106 40.6
Hma1.2p1_2431F.1_g322030 Hydrangea macrophylla HOM05D007328 ORTHO05D009246 2.1e-08 63.2 148 34.5
Lalb_Chr07g0183141 Lupinus albus HOM05D007328 ORTHO05D009246 2.1e-08 63.2 39 79.5
MBI10_g15972_MAGBIO Magnolia biondii HOM05D007328 ORTHO05D009246 2.1e-08 63.2 39 84.6
PSO063G4259 Papaver somniferum HOM05D007328 ORTHO05D009246 2.1e-08 63.2 39 79.5
PSO067G0004 Papaver somniferum HOM05D007328 ORTHO05D009246 2.1e-08 63.2 39 79.5
Aqoxy5G03651 Aquilegia oxysepala HOM05D007328 ORTHO05D009246 2.7e-08 62.8 38 84.2
MSTRG.4340 Avicennia marina HOM05D007328 ORTHO05D009246 2.7e-08 62.8 39 79.5
Gohir.A12G186600 Gossypium hirsutum HOM05D007328 ORTHO05D009246 2.7e-08 62.8 106 40.6
Gohir.D12G189600 Gossypium hirsutum HOM05D007328 ORTHO05D009246 2.7e-08 62.8 106 40.6
Gorai.008G203400 Gossypium raimondii HOM05D007328 ORTHO05D009246 2.7e-08 62.8 106 40.6
Aa31LG4G2240 Aethionema arabicum HOM05D007328 ORTHO05D009246 3.5e-08 62.4 38 84.2
AL2G39190 Arabidopsis lyrata HOM05D007328 ORTHO05D009246 3.5e-08 62.4 38 84.2
AT1G78790 Arabidopsis thaliana HOM05D007328 ORTHO05D009246 3.5e-08 62.4 38 84.2
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 3.5e-08 62.4 38 84.2
Carub.0002s1493 Capsella rubella HOM05D007328 ORTHO05D009246 3.5e-08 62.4 38 84.2
CARHR072340 Cardamine hirsuta HOM05D007328 ORTHO05D009246 3.5e-08 62.4 38 84.2
Thhalv10019789m.g Eutrema salsugineum HOM05D007328 ORTHO05D009246 3.5e-08 62.4 38 84.2
Lsat_1_v5_gn_3_90700 Lactuca sativa HOM05D007328 ORTHO05D009246 3.5e-08 62.4 107 40.2
Lsat_1_v5_gn_5_12821 Lactuca sativa HOM05D007328 ORTHO05D009246 3.5e-08 62.4 39 82.1
Sp5g33820 Schrenkiella parvula HOM05D007328 ORTHO05D009246 3.5e-08 62.4 38 84.2
HPP92_017655 Vanilla planifolia HOM05D007328 ORTHO05D009246 3.5e-08 62.4 39 82.1
SEGI_23865 Sequoiadendron giganteum HOM05D007328 ORTHO05D009246 4.6e-08 62.0 39 79.5
Cc04_g10870 Coffea canephora HOM05D007328 ORTHO05D009246 6.0e-08 61.6 39 79.5
Potri.012G090600 Populus trichocarpa HOM05D007328 ORTHO05D009246 6.0e-08 61.6 39 79.5
Sabra12G0065400 Salix brachista HOM05D007328 ORTHO05D009246 6.0e-08 61.6 39 79.5
Glyma.05G043400 Glycine max HOM05D007328 ORTHO05D009246 7.9e-08 61.2 39 79.5
Os04g0481500 Oryza sativa ssp. japonica HOM05D007328 ORTHO05D009246 7.9e-08 61.2 39 79.5
BcaC08g47455 Brassica carinata HOM05D007328 ORTHO05D009246 1.0e-07 60.8 38 81.6
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 1.0e-07 60.8 38 81.6
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 1.0e-07 60.8 38 81.6
BolC6t40286H Brassica oleracea HOM05D007328 ORTHO05D009246 1.0e-07 60.8 38 81.6
BraA07t31907Z Brassica rapa HOM05D007328 ORTHO05D009246 1.0e-07 60.8 38 81.6
Gohir.D09G245301 Gossypium hirsutum HOM05D007328 ORTHO05D009246 1.0e-07 60.8 106 39.6
HanXRQChr08g0235201 Helianthus annuus HOM05D007328 ORTHO05D009246 1.0e-07 60.8 35 88.6
QL10p005934 Quercus lobata HOM05D007328 ORTHO05D009246 1.0e-07 60.8 36 83.3
Ca_19431_v3 Cicer arietinum L. HOM05D007328 ORTHO05D009246 1.3e-07 60.5 39 76.9
Ca_30674_v3 Cicer arietinum L. HOM05D007328 ORTHO05D009246 1.3e-07 60.5 39 76.9
THA.LOC104809276 Tarenaya hassleriana HOM05D007328 ORTHO05D009246 1.3e-07 60.5 38 78.9
arahy.Tifrunner.gnm1.ann1.RLPB8M Arachis hypogaea HOM05D007328 ORTHO05D009246 1.8e-07 60.1 107 42.1
arahy.Tifrunner.gnm1.ann1.VT7US1 Arachis hypogaea HOM05D007328 ORTHO05D009246 1.8e-07 60.1 107 42.1
Pp3c15_7370 Physcomitrium patens HOM05D007328 ORTHO05D009246 1.8e-07 60.1 39 79.5
TWI23G0848 Tripterygium wilfordii HOM05D007328 ORTHO05D009246 1.8e-07 60.1 39 76.9
Ah.08g218420 Amaranthus hybridus HOM05D007328 ORTHO05D009246 2.3e-07 59.7 39 74.4
Migut.D02033 Erythranthe guttata HOM05D007328 ORTHO05D009246 2.3e-07 59.7 39 79.5
SalBow6G3374 Salvia bowleyana HOM05D007328 ORTHO05D009246 2.3e-07 59.7 39 76.9
C03p92780 Brassica napus HOM05D007328 ORTHO05D009246 3.0e-07 59.3 38 78.9
Lj4g0027684 Lotus japonicus HOM05D007328 ORTHO05D009246 3.0e-07 59.3 106 38.7
AagrBONN_evm.TU.Sc2ySwM_369.482 Anthoceros agrestis HOM05D007328 ORTHO05D009246 3.9e-07 58.9 39 76.9
MELO3C026242.2 Cucumis melo HOM05D007328 ORTHO05D009246 3.9e-07 58.9 104 38.5
Phvul.003G206900 Phaseolus vulgaris HOM05D007328 ORTHO05D009246 8.7e-07 57.8 39 74.4
SHI17354 Sapria himalayana HOM05D007328 ORTHO05D009246 8.7e-07 57.8 39 74.4
Mapoly0166s0013 Marchantia polymorpha HOM05D007328 ORTHO05D009246 1.1e-06 57.4 39 74.4
Medtr4g104430 Medicago truncatula HOM05D007328 ORTHO05D009246 1.1e-06 57.4 39 74.4
ECA233G5563 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-06 57.0 39 82.1
unitig_62.g23226 Utricularia gibba HOM05D007328 ORTHO05D009246 1.9e-06 56.6 39 71.8
CDE02G4603 Ceratophyllum demersum HOM05D007328 ORTHO05D009246 3.3e-06 55.8 39 71.8
Glyma.17G125900 Glycine max HOM05D007328 ORTHO05D009246 3.3e-06 55.8 39 71.8
Psat4g062040 Pisum sativum HOM05D007328 ORTHO05D009246 3.3e-06 55.8 39 69.2
TPR.G37571 Trifolium pratense HOM05D007328 ORTHO05D009246 5.6e-06 55.1 39 69.2


User provided reference genes

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