Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 4.1e-264 914.1 434 100.0
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 5.3e-227 790.8 432 86.8
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.5e-221 771.9 437 83.8
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 1.7e-220 769.2 430 81.6
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 4.5e-218 761.1 430 80.5
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 4.5e-218 761.1 442 83.5
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 7.7e-218 760.4 432 83.8
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 2.9e-217 758.4 445 81.8
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 6.5e-217 757.3 427 81.5
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 4.7e-215 751.1 438 80.8
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 6.7e-214 747.3 431 81.4
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 4.4e-213 744.6 430 79.5
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 9.7e-213 743.4 430 79.3
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.3e-212 743.0 440 78.6
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.3e-212 743.0 438 78.3
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 2.8e-212 741.9 430 79.3
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 2.0e-210 735.7 436 79.4
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 2.0e-210 735.7 436 77.8
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.6e-210 735.3 431 80.0
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 5.9e-210 734.2 440 77.5
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 3.6e-207 724.9 439 78.6
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 8.0e-207 723.8 441 77.1
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 1.0e-206 723.4 431 78.4
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 5.2e-206 721.1 433 77.8
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 5.2e-206 721.1 434 77.9
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 1.5e-205 719.5 433 78.1
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 2.0e-205 719.2 437 77.6
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 1.3e-204 716.5 438 78.3
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 2.8e-204 715.3 435 75.9
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 3.7e-204 714.9 438 76.7
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 6.3e-204 714.1 435 76.3
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 3.1e-203 711.8 436 76.8
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 7.0e-203 710.7 434 75.3
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 9.1e-203 710.3 443 77.2
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 1.2e-202 709.9 436 76.8
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 1.2e-202 709.9 510 68.0
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 5.9e-202 707.6 441 76.6
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 7.7e-202 707.2 424 78.1
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 7.7e-202 707.2 435 75.9
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 1.0e-201 706.8 436 75.0
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 2.2e-201 705.7 446 74.7
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 2.9e-201 705.3 440 75.9
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 2.9e-201 705.3 435 76.3
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 3.8e-201 704.9 442 76.0
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 5.0e-201 704.5 397 81.6
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 5.0e-201 704.5 453 74.2
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 8.5e-201 703.7 427 77.3
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 2.5e-200 702.2 440 75.9
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 3.2e-200 701.8 444 75.0
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 5.5e-200 701.0 430 75.3
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 7.2e-200 700.7 436 75.9
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 9.4e-200 700.3 437 74.1
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 9.4e-200 700.3 435 74.9
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 1.2e-199 699.9 394 82.2
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 1.6e-199 699.5 442 74.0
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 3.6e-199 698.4 435 73.3
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 3.6e-199 698.4 435 74.7
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 6.1e-199 697.6 447 74.5
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 8.0e-199 697.2 446 74.4
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 8.0e-199 697.2 438 75.1
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 8.0e-199 697.2 436 75.5
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 8.0e-199 697.2 435 76.1
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 1.4e-198 696.4 453 73.3
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.4e-198 696.4 453 73.1
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 1.8e-198 696.0 425 78.6
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 2.3e-198 695.7 436 74.3
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 2.3e-198 695.7 435 74.9
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 4.0e-198 694.9 430 78.4
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 5.2e-198 694.5 435 72.9
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 5.2e-198 694.5 429 75.5
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 5.2e-198 694.5 431 74.5
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 6.7e-198 694.1 444 74.1
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 6.7e-198 694.1 433 75.1
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 8.8e-198 693.7 447 74.7
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 1.2e-197 693.3 446 73.8
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 1.2e-197 693.3 449 73.9
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 1.5e-197 693.0 435 74.7
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 4.4e-197 691.4 436 75.5
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 5.7e-197 691.0 441 74.4
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 7.5e-197 690.6 442 75.3
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 9.7e-197 690.3 453 72.4
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 1.3e-196 689.9 445 73.9
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 1.3e-196 689.9 441 74.6
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 1.7e-196 689.5 446 73.3
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.7e-196 689.5 452 72.3
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 3.7e-196 688.3 453 72.4
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 3.7e-196 688.3 453 72.6
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 4.8e-196 688.0 445 73.7
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 4.8e-196 688.0 445 73.7
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.1e-195 686.8 452 72.1
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 2.4e-195 685.6 438 75.1
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.3e-195 684.5 452 72.3
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 1.2e-194 683.3 447 73.6
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 7.7e-194 680.6 432 74.8
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.0e-193 680.2 446 73.1
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 1.3e-193 679.9 437 75.1
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 1.7e-193 679.5 438 74.4
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 1.7e-193 679.5 479 69.1
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 2.9e-193 678.7 446 72.6
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 3.8e-193 678.3 447 72.7
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 3.8e-193 678.3 436 73.9
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 5.0e-193 677.9 447 72.7
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 1.2e-191 673.3 447 72.3
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 1.6e-191 672.9 447 72.3
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.7e-191 671.4 438 74.2
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 3.0e-190 668.7 433 71.1
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 2.6e-189 665.6 364 81.9
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 5.7e-189 664.5 364 81.9
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 6.3e-188 661.0 433 70.9
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 8.3e-188 660.6 427 72.1
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 3.1e-187 658.7 427 73.3
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 7.7e-186 654.1 388 77.6
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 7.7e-186 654.1 438 72.8
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 4.2e-184 648.3 437 71.6
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 1.8e-179 632.9 443 69.1
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 7.8e-178 627.5 348 83.6
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 1.2e-175 620.2 420 69.8
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 4.7e-175 618.2 322 87.0
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 8.3e-172 607.4 457 64.3
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 5.4e-171 604.7 326 84.0
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 1.9e-168 596.3 341 84.2
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 3.7e-164 582.0 341 74.8
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 1.5e-160 570.1 430 64.9
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.4e-157 558.9 392 72.4
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.9e-156 555.8 289 85.5
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 2.9e-156 555.8 290 85.5
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.1e-155 553.9 291 84.9
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 9.2e-147 524.2 290 80.3
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.6e-143 512.3 334 66.5
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 4.4e-141 505.4 270 83.7
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 6.4e-132 474.9 303 77.2
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 5.3e-126 455.3 298 71.8
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 2.5e-123 446.4 335 58.8
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 6.0e-122 441.8 311 69.5
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 1.6e-119 433.7 285 66.7
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.2e-108 396.7 342 52.0
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 3.0e-97 359.8 266 68.4
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 9.7e-96 354.8 318 51.3
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.8e-89 334.0 332 47.3
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.0e-68 265.0 186 68.8
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 4.2e-67 259.6 139 82.7
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.3e-55 221.5 120 82.5
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.9e-55 220.3 109 89.0
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.9e-51 207.6 124 74.2
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.1e-50 204.1 138 65.2
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 1.4e-46 191.4 127 69.3
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 8.9e-33 145.6 85 78.8
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.6e-32 144.1 85 77.6
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 1.5e-27 128.3 80 71.2
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 2.8e-26 124.0 101 59.4
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 6.9e-17 92.8 109 48.6
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 4.2e-14 83.6 52 71.2
Actinidia21694 Actinidia chinensis HOM05D014184 ORTHO05D015797 6.5e-07 59.7 49 69.4
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 6.5e-07 59.7 129 38.0


User provided reference genes

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