Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039669 Camellia sinensis var. sinensis HOM05D002870 ORTHO05D043308 1.1e-39 166.0 74 100.0
CSS0013246 Camellia sinensis var. sinensis HOM05D002870 ORTHO05D043308 1.2e-38 162.5 74 97.3
vmacro12028 Vaccinium macrocarpon HOM05D002870 ORTHO05D003241 2.8e-11 71.6 35 88.6
CSS0027530 Camellia sinensis var. sinensis HOM05D002870 ORTHO05D003241 8.1e-11 70.1 34 88.2
Dinv26639 Davidia involucrata HOM05D002870 ORTHO05D003241 8.1e-11 70.1 34 88.2
Rhsim06G0183700 Rhododendron simsii HOM05D002870 ORTHO05D003241 1.4e-10 69.3 39 76.9
MBI16_g18970_MAGBIO Magnolia biondii HOM05D002870 ORTHO05D003241 1.8e-10 68.9 35 82.9
Actinidia20595 Actinidia chinensis HOM05D002870 ORTHO05D003241 3.1e-10 68.2 34 85.3
Cc05_g10040 Coffea canephora HOM05D002870 ORTHO05D003241 4.0e-10 67.8 34 85.3
Peaxi162Scf00111g00628 Petunia axillaris HOM05D002870 ORTHO05D003241 4.0e-10 67.8 34 85.3
MSTRG.12854 Avicennia marina HOM05D002870 ORTHO05D003241 5.3e-10 67.4 34 85.3
CSS0034829 Camellia sinensis var. sinensis HOM05D002870 ORTHO05D003241 9.0e-10 66.6 34 82.4
CSS0048151 Camellia sinensis var. sinensis HOM05D002870 ORTHO05D003241 9.0e-10 66.6 34 82.4
MBI03_g18945_MAGBIO Magnolia biondii HOM05D002870 ORTHO05D003241 9.0e-10 66.6 35 80.0
Migut.H02060 Erythranthe guttata HOM05D002870 ORTHO05D003241 1.2e-09 66.2 34 82.4
HanXRQChr09g0257511 Helianthus annuus HOM05D002870 ORTHO05D003241 1.2e-09 66.2 34 82.4
SalBow7G3978 Salvia bowleyana HOM05D002870 ORTHO05D003241 1.2e-09 66.2 34 79.4
SalBow7G4695 Salvia bowleyana HOM05D002870 ORTHO05D003241 1.2e-09 66.2 34 79.4
CANSAT56G2737 Cannabis sativa HOM05D002870 ORTHO05D003241 3.4e-09 64.7 31 83.9
PSO675G5265 Papaver somniferum HOM05D002870 ORTHO05D003241 3.4e-09 64.7 34 82.4
Ciclev10019948m.g Citrus clementina HOM05D002870 ORTHO05D003241 4.5e-09 64.3 34 79.4
SGA_v2.0_scaffold130G34240 Striga asiatica HOM05D002870 ORTHO05D003241 4.5e-09 64.3 34 79.4
Aqoxy1G01676 Aquilegia oxysepala HOM05D002870 ORTHO05D003241 5.8e-09 63.9 34 82.4
Nitab4.5_0001612g0070 Nicotiana tabacum HOM05D002870 ORTHO05D003241 5.8e-09 63.9 34 79.4
Nitab4.5_0004166g0010 Nicotiana tabacum HOM05D002870 ORTHO05D003241 5.8e-09 63.9 34 79.4
Solyc07g056390.4 Solanum lycopersicum HOM05D002870 ORTHO05D003241 5.8e-09 63.9 34 79.4
Sopen07g029760 Solanum pennellii HOM05D002870 ORTHO05D003241 5.8e-09 63.9 34 79.4
PGSC0003DMG400031102 Solanum tuberosum HOM05D002870 ORTHO05D003241 5.8e-09 63.9 34 79.4
Actinidia12331 Actinidia chinensis HOM05D002870 ORTHO05D003241 7.6e-09 63.5 32 81.2
CAN.G585.1 Capsicum annuum HOM05D002870 ORTHO05D003241 7.6e-09 63.5 34 79.4
Nn3g20427 Nelumbo nucifera HOM05D002870 ORTHO05D003241 1.0e-08 63.2 34 76.5
ATR0665G063 Amborella trichopoda HOM05D002870 ORTHO05D003241 1.3e-08 62.8 34 73.5
Lalb_Chr19g0133501 Lupinus albus HOM05D002870 ORTHO05D003241 1.3e-08 62.8 33 75.8
MBI03_g28523_MAGBIO Magnolia biondii HOM05D002870 ORTHO05D003241 1.3e-08 62.8 35 77.1
PSO541G4247 Papaver somniferum HOM05D002870 ORTHO05D003241 1.3e-08 62.8 34 79.4
Prupe.4G145500 Prunus persica HOM05D002870 ORTHO05D003241 1.3e-08 62.8 34 76.5
ECA240G4166 Erigeron canadensis HOM05D002870 ORTHO05D003241 1.7e-08 62.4 34 79.4
Lsat_1_v5_gn_9_103381 Lactuca sativa HOM05D002870 ORTHO05D003241 1.7e-08 62.4 34 79.4
Potri.011G139900 Populus trichocarpa HOM05D002870 ORTHO05D003241 1.7e-08 62.4 34 73.5
Hund10319 Selenicereus undatus HOM05D002870 ORTHO05D003241 1.7e-08 62.4 34 76.5
Cpa.g.sc229.6 Carica papaya HOM05D002870 ORTHO05D003241 2.9e-08 61.6 34 73.5
Eucgr.F03193 Eucalyptus grandis HOM05D002870 ORTHO05D003241 2.9e-08 61.6 32 75.0
Hma1.2p1_0198F.1_g085490 Hydrangea macrophylla HOM05D002870 ORTHO05D003241 2.9e-08 61.6 34 76.5
Potri.001G436100 Populus trichocarpa HOM05D002870 ORTHO05D003241 2.9e-08 61.6 34 73.5
CANSAT56G1661 Cannabis sativa HOM05D002870 ORTHO05D003241 3.8e-08 61.2 31 80.6
RcHm_v2.0_Chr5g0027151 Rosa chinensis HOM05D002870 ORTHO05D003241 3.8e-08 61.2 34 73.5
SalBow6G5801 Salvia bowleyana HOM05D002870 ORTHO05D003241 3.8e-08 61.2 34 73.5
HPP92_018505 Vanilla planifolia HOM05D002870 ORTHO05D003241 3.8e-08 61.2 34 76.5
Sc03g0007830 Simmondsia chinensis HOM05D002870 ORTHO05D003241 4.9e-08 60.8 33 78.8
EL10Ac3g06812 Beta vulgaris HOM05D002870 ORTHO05D003241 6.5e-08 60.5 40 65.0
Os03g0733800 Oryza sativa ssp. japonica HOM05D002870 ORTHO05D003241 6.5e-08 60.5 33 72.7
RcHm_v2.0_Chr5g0027131 Rosa chinensis HOM05D002870 ORTHO05D003241 6.5e-08 60.5 34 73.5
Sabra16G0290200 Salix brachista HOM05D002870 ORTHO05D003241 6.5e-08 60.5 34 70.6
Zm00001eb056320 Zea mays HOM05D002870 ORTHO05D003241 6.5e-08 60.5 33 72.7
Duzib192G0466 Durio zibethinus HOM05D002870 ORTHO05D003241 8.4e-08 60.1 34 73.5
HanXRQChr13g0389791 Helianthus annuus HOM05D002870 ORTHO05D003241 8.4e-08 60.1 33 78.8
HPP92_015880 Vanilla planifolia HOM05D002870 ORTHO05D003241 1.1e-07 59.7 34 73.5
AUR62013963 Chenopodium quinoa HOM05D002870 ORTHO05D003241 1.4e-07 59.3 38 68.4
RcHm_v2.0_Chr5g0027251 Rosa chinensis HOM05D002870 ORTHO05D003241 1.4e-07 59.3 31 77.4
Sabra11G0126000 Salix brachista HOM05D002870 ORTHO05D003241 1.9e-07 58.9 34 64.7
Thecc.06G146800 Theobroma cacao HOM05D002870 ORTHO05D003241 1.9e-07 58.9 34 70.6
BcaC02g12013 Brassica carinata HOM05D002870 ORTHO05D003241 2.5e-07 58.5 36 63.9
A05p07240 Brassica napus HOM05D002870 ORTHO05D003241 2.5e-07 58.5 36 63.9
C04p08700 Brassica napus HOM05D002870 ORTHO05D003241 2.5e-07 58.5 36 63.9
BolC4t22462H Brassica oleracea HOM05D002870 ORTHO05D003241 2.5e-07 58.5 36 63.9
BraA05t19689Z Brassica rapa HOM05D002870 ORTHO05D003241 2.5e-07 58.5 36 63.9
CARHR133700 Cardamine hirsuta HOM05D002870 ORTHO05D003241 2.5e-07 58.5 36 63.9
AUR62019652 Chenopodium quinoa HOM05D002870 ORTHO05D003241 2.5e-07 58.5 39 61.5
Hund21550 Selenicereus undatus HOM05D002870 ORTHO05D003241 3.2e-07 58.2 32 75.0
Carub.0004s2099 Capsella rubella HOM05D002870 ORTHO05D003241 4.2e-07 57.8 36 63.9
CiPaw.10G089800 Carya illinoinensis HOM05D002870 ORTHO05D003241 4.2e-07 57.8 31 77.4
COL.COLO4_31032 Corchorus olitorius HOM05D002870 ORTHO05D003241 4.2e-07 57.8 34 70.6
Gohir.A05G146900 Gossypium hirsutum HOM05D002870 ORTHO05D003241 4.2e-07 57.8 34 67.6
Gohir.D05G149400 Gossypium hirsutum HOM05D002870 ORTHO05D003241 4.2e-07 57.8 34 67.6
Gorai.009G153400 Gossypium raimondii HOM05D002870 ORTHO05D003241 4.2e-07 57.8 34 67.6
Lsat_1_v5_gn_7_99481 Lactuca sativa HOM05D002870 ORTHO05D003241 4.2e-07 57.8 34 64.7
Nitab4.5_0009731g0010 Nicotiana tabacum HOM05D002870 ORTHO05D003241 4.2e-07 57.8 31 71.0
Sabra16G0291300 Salix brachista HOM05D002870 ORTHO05D003241 4.2e-07 57.8 34 67.6
TWI53G0974 Tripterygium wilfordii HOM05D002870 ORTHO05D003241 4.2e-07 57.8 34 67.6
BcaB02g09170 Brassica carinata HOM05D002870 ORTHO05D003241 5.5e-07 57.4 38 60.5
CDE06G0487 Ceratophyllum demersum HOM05D002870 ORTHO05D003241 5.5e-07 57.4 34 64.7
TWI09G1176 Tripterygium wilfordii HOM05D002870 ORTHO05D003241 5.5e-07 57.4 34 67.6
Ah.06g187400 Amaranthus hybridus HOM05D002870 ORTHO05D003241 7.1e-07 57.0 33 75.8
EL10Ac4g08526 Beta vulgaris HOM05D002870 ORTHO05D003241 7.1e-07 57.0 36 66.7
QL05p055495 Quercus lobata HOM05D002870 ORTHO05D003241 7.1e-07 57.0 31 77.4
Atru.chr2.1829 Acer truncatum HOM05D002870 ORTHO05D003241 9.3e-07 56.6 34 70.6
MD05G1280900 Malus domestica HOM05D002870 ORTHO05D003241 9.3e-07 56.6 34 67.6
Prupe.4G084000 Prunus persica HOM05D002870 ORTHO05D003241 9.3e-07 56.6 34 67.6
Sp4g21330 Schrenkiella parvula HOM05D002870 ORTHO05D003241 9.3e-07 56.6 36 61.1
DCAR_021067 Daucus carota HOM05D002870 ORTHO05D003241 1.2e-06 56.2 33 66.7
DCAR_021069 Daucus carota HOM05D002870 ORTHO05D003241 1.2e-06 56.2 33 66.7
Atru.chr10.1158 Acer truncatum HOM05D002870 ORTHO05D003241 1.6e-06 55.8 34 64.7
CiPaw.09G121100 Carya illinoinensis HOM05D002870 ORTHO05D003241 1.6e-06 55.8 31 74.2
RcHm_v2.0_Chr5g0014551 Rosa chinensis HOM05D002870 ORTHO05D003241 1.6e-06 55.8 33 69.7
SGA_v2.0_scaffold51G18638 Striga asiatica HOM05D002870 ORTHO05D003241 1.6e-06 55.8 31 67.7
GSVIVG01021532001 Vitis vinifera HOM05D002870 ORTHO05D003241 1.6e-06 55.8 34 64.7
Aa31LG4G2640 Aethionema arabicum HOM05D002870 ORTHO05D003241 2.1e-06 55.5 33 66.7
CARHR065120 Cardamine hirsuta HOM05D002870 ORTHO05D003241 2.1e-06 55.5 33 69.7
AT2G38960 Arabidopsis thaliana HOM05D002870 ORTHO05D003241 2.7e-06 55.1 36 61.1
Thhalv10018491m.g Eutrema salsugineum HOM05D002870 ORTHO05D003241 2.7e-06 55.1 34 64.7
MD10G1259300 Malus domestica HOM05D002870 ORTHO05D003241 2.7e-06 55.1 34 67.6
Peaxi162Scf00045g02438 Petunia axillaris HOM05D002870 ORTHO05D003241 2.7e-06 55.1 31 71.0
GSVIVG01020501001 Vitis vinifera HOM05D002870 ORTHO05D003241 2.7e-06 55.1 34 76.5
AL4G36270 Arabidopsis lyrata HOM05D002870 ORTHO05D003241 3.5e-06 54.7 36 61.1
Ciclev10015325m.g Citrus clementina HOM05D002870 ORTHO05D003241 3.5e-06 54.7 31 67.7
Eucgr.D00278 Eucalyptus grandis HOM05D002870 ORTHO05D003241 3.5e-06 54.7 34 61.8
Nitab4.5_0001594g0070 Nicotiana tabacum HOM05D002870 ORTHO05D003241 3.5e-06 54.7 31 67.7
BcaB03g14971 Brassica carinata HOM05D002870 ORTHO05D003241 4.6e-06 54.3 33 66.7
BcaC08g46674 Brassica carinata HOM05D002870 ORTHO05D003241 4.6e-06 54.3 33 66.7
A07p38400 Brassica napus HOM05D002870 ORTHO05D003241 4.6e-06 54.3 33 66.7
C06p46490 Brassica napus HOM05D002870 ORTHO05D003241 4.6e-06 54.3 33 66.7
BolC6t39695H Brassica oleracea HOM05D002870 ORTHO05D003241 4.6e-06 54.3 33 66.7
BraA07t31401Z Brassica rapa HOM05D002870 ORTHO05D003241 4.6e-06 54.3 33 66.7
Cfa000918 Carpinus fangiana HOM05D002870 ORTHO05D003241 4.6e-06 54.3 31 71.0
Haze_05638 Corylus avellana HOM05D002870 ORTHO05D003241 4.6e-06 54.3 31 71.0
Duzib235G0832 Durio zibethinus HOM05D002870 ORTHO05D003241 4.6e-06 54.3 35 62.9
Glyma.09G086800 Glycine max HOM05D002870 ORTHO05D003241 4.6e-06 54.3 31 71.0
Glyma.15G194900 Glycine max HOM05D002870 ORTHO05D003241 4.6e-06 54.3 31 71.0
Gohir.D06G143800 Gossypium hirsutum HOM05D002870 ORTHO05D003241 4.6e-06 54.3 31 67.7
Gorai.010G167600 Gossypium raimondii HOM05D002870 ORTHO05D003241 4.6e-06 54.3 31 67.7
CDE07G2073 Ceratophyllum demersum HOM05D002870 ORTHO05D003241 6.0e-06 53.9 38 57.9
Thhalv10016606m.g Eutrema salsugineum HOM05D002870 ORTHO05D003241 6.0e-06 53.9 36 55.6
PGR083G1793 Punica granatum HOM05D002870 ORTHO05D003241 6.0e-06 53.9 33 60.6
Sed0003019 Sechium edule HOM05D002870 ORTHO05D003241 6.0e-06 53.9 34 64.7
Sed0023606 Sechium edule HOM05D002870 ORTHO05D003241 6.0e-06 53.9 34 64.7
THA.LOC104812282 Tarenaya hassleriana HOM05D002870 ORTHO05D003241 6.0e-06 53.9 33 69.7
Aa31LG5G20700 Aethionema arabicum HOM05D002870 ORTHO05D003241 7.9e-06 53.5 36 55.6
CANSAT35G1212 Cannabis sativa HOM05D002870 ORTHO05D003241 7.9e-06 53.5 34 64.7
Carub.0002s1908 Capsella rubella HOM05D002870 ORTHO05D003241 7.9e-06 53.5 31 67.7


User provided reference genes

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