Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039652 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.7e-49 198.4 102 100.0
CSS0026020 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.0e-47 192.2 102 97.1
CSS0041085 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 2.6e-47 191.8 101 97.0
CSS0003750 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 1.2e-25 119.8 104 69.2
Actinidia27309 Actinidia chinensis HOM05D000086 ORTHO05D002912 3.0e-24 115.2 99 69.7
Ciclev10024464m.g Citrus clementina HOM05D000086 ORTHO05D002912 3.0e-24 115.2 102 61.8
Dinv37502 Davidia involucrata HOM05D000086 ORTHO05D002912 4.0e-24 114.8 100 65.0
Cpa.g.sc15.6 Carica papaya HOM05D000086 ORTHO05D002912 8.9e-24 113.6 102 64.7
Potri.001G088400 Populus trichocarpa HOM05D000086 ORTHO05D002912 4.4e-23 111.3 105 63.8
Dinv38814 Davidia involucrata HOM05D000086 ORTHO05D002912 1.7e-22 109.4 101 64.4
Sabra01G0064700 Salix brachista HOM05D000086 ORTHO05D002912 2.2e-22 109.0 103 62.1
Lj2A163T68 Lonicera japonica HOM05D000086 ORTHO05D002912 4.9e-22 107.8 106 61.3
Thecc.08G165900 Theobroma cacao HOM05D000086 ORTHO05D002912 1.1e-21 106.7 104 59.6
CSS0007727 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 1.8e-21 105.9 104 63.5
Haze_09101 Corylus avellana HOM05D000086 ORTHO05D002912 1.8e-21 105.9 102 61.8
Glyma.05G218700 Glycine max HOM05D000086 ORTHO05D002912 1.8e-21 105.9 105 61.9
QL02p029662 Quercus lobata HOM05D000086 ORTHO05D002912 2.4e-21 105.5 102 63.7
PGR031G3866 Punica granatum HOM05D000086 ORTHO05D002912 3.1e-21 105.1 104 61.5
Glyma.08G024800 Glycine max HOM05D000086 ORTHO05D002912 4.1e-21 104.8 106 60.4
Nn1g00280 Nelumbo nucifera HOM05D000086 ORTHO05D002912 5.4e-21 104.4 102 62.7
Nitab4.5_0002367g0040 Nicotiana tabacum HOM05D000086 ORTHO05D002912 9.2e-21 103.6 102 58.8
Lsat_1_v5_gn_6_71661 Lactuca sativa HOM05D000086 ORTHO05D002912 1.2e-20 103.2 102 57.8
Gohir.D08G249800 Gossypium hirsutum HOM05D000086 ORTHO05D002912 1.6e-20 102.8 105 55.2
DCAR_030429 Daucus carota HOM05D000086 ORTHO05D002912 2.7e-20 102.1 102 59.8
Solyc08g082680.3 Solanum lycopersicum HOM05D000086 ORTHO05D002912 2.7e-20 102.1 102 59.8
Sopen08g030900 Solanum pennellii HOM05D000086 ORTHO05D002912 2.7e-20 102.1 102 59.8
Gohir.A08G229500 Gossypium hirsutum HOM05D000086 ORTHO05D002912 3.5e-20 101.7 105 55.2
Actinidia02522 Actinidia chinensis HOM05D000086 ORTHO05D002912 4.5e-20 101.3 103 61.2
Lj4g0025211 Lotus japonicus HOM05D000086 ORTHO05D002912 4.5e-20 101.3 109 56.9
MBI06_g10868_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 5.9e-20 100.9 102 57.8
Gorai.004G266400 Gossypium raimondii HOM05D000086 ORTHO05D002912 7.8e-20 100.5 108 56.5
CANSAT21G1707 Cannabis sativa HOM05D000086 ORTHO05D002912 1.0e-19 100.1 107 57.0
Manes.01G052600 Manihot esculenta HOM05D000086 ORTHO05D002912 1.0e-19 100.1 102 56.9
PGSC0003DMG400012137 Solanum tuberosum HOM05D000086 ORTHO05D002912 1.3e-19 99.8 103 59.2
Glyma.13G002800 Glycine max HOM05D000086 ORTHO05D002912 1.7e-19 99.4 108 61.1
VMungo0251G0743 Vigna mungo HOM05D000086 ORTHO05D002912 1.7e-19 99.4 107 57.9
CiPaw.12G080900 Carya illinoinensis HOM05D000086 ORTHO05D002912 2.3e-19 99.0 110 57.3
Prupe.5G124100 Prunus persica HOM05D000086 ORTHO05D002912 2.9e-19 98.6 105 58.1
MD06G1111300 Malus domestica HOM05D000086 ORTHO05D002912 3.8e-19 98.2 108 56.5
Eucgr.D01770 Eucalyptus grandis HOM05D000086 ORTHO05D002912 6.6e-19 97.4 103 57.3
Manes.02G007100 Manihot esculenta HOM05D000086 ORTHO05D002912 6.6e-19 97.4 103 57.3
Phvul.002G300500 Phaseolus vulgaris HOM05D000086 ORTHO05D002912 6.6e-19 97.4 107 56.1
Hma1.2p1_0440F.1_g153540 Hydrangea macrophylla HOM05D000086 ORTHO05D002912 8.6e-19 97.1 77 72.7
arahy.Tifrunner.gnm1.ann1.1IN0XH Arachis hypogaea HOM05D000086 ORTHO05D002912 1.1e-18 96.7 102 58.8
MD14G1132500 Malus domestica HOM05D000086 ORTHO05D002912 1.5e-18 96.3 107 55.1
arahy.Tifrunner.gnm1.ann1.60J8GE Arachis hypogaea HOM05D000086 ORTHO05D002912 1.9e-18 95.9 102 58.8
Lalb_Chr05g0223981 Lupinus albus HOM05D000086 ORTHO05D002912 2.5e-18 95.5 107 57.9
Lalb_Chr16g0390721 Lupinus albus HOM05D000086 ORTHO05D002912 3.3e-18 95.1 108 55.6
MBI07_g24778_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 3.3e-18 95.1 102 54.9
Medtr3g081030 Medicago truncatula HOM05D000086 ORTHO05D002912 4.3e-18 94.7 99 55.6
Potri.003G142600 Populus trichocarpa HOM05D000086 ORTHO05D002912 4.3e-18 94.7 100 55.0
GSVIVG01019592001 Vitis vinifera HOM05D000086 ORTHO05D002912 5.6e-18 94.4 102 58.8
A01p15280 Brassica napus HOM05D000086 ORTHO05D002912 9.5e-18 93.6 96 56.2
AL7G29290 Arabidopsis lyrata HOM05D000086 ORTHO05D002912 1.2e-17 93.2 101 58.4
AT4G24015 Arabidopsis thaliana HOM05D000086 ORTHO05D002912 1.2e-17 93.2 101 58.4
BcaNung01107 Brassica carinata HOM05D000086 ORTHO05D002912 1.2e-17 93.2 97 56.7
Peaxi162Scf00074g00527 Petunia axillaris HOM05D000086 ORTHO05D002912 1.2e-17 93.2 101 56.4
BcaNung04249 Brassica carinata HOM05D000086 ORTHO05D002912 1.6e-17 92.8 101 59.4
C07p53290 Brassica napus HOM05D000086 ORTHO05D002912 1.6e-17 92.8 101 59.4
BolC7t45824H Brassica oleracea HOM05D000086 ORTHO05D002912 1.6e-17 92.8 101 59.4
CARHR231420 Cardamine hirsuta HOM05D000086 ORTHO05D002912 2.1e-17 92.4 101 57.4
Lj6g0016186 Lotus japonicus HOM05D000086 ORTHO05D002912 2.1e-17 92.4 99 56.6
MSTRG.10181 Avicennia marina HOM05D002688 ORTHO05D002911 2.8e-17 92.0 101 57.4
EL10Ac5g12948 Beta vulgaris HOM05D000086 ORTHO05D002912 3.6e-17 91.7 97 55.7
BraA03t14556Z Brassica rapa HOM05D000086 ORTHO05D002912 3.6e-17 91.7 101 59.4
Nn3g18960 Nelumbo nucifera HOM05D000086 ORTHO05D002912 3.6e-17 91.7 92 60.9
Sp7g21970 Schrenkiella parvula HOM05D000086 ORTHO05D002912 3.6e-17 91.7 97 58.8
Duzib116G0331 Durio zibethinus HOM05D000086 ORTHO05D002912 4.7e-17 91.3 108 55.6
ECA233G6093 Erigeron canadensis HOM05D000086 ORTHO05D002912 4.7e-17 91.3 103 53.4
Aa31LG6G7220 Aethionema arabicum HOM05D000086 ORTHO05D002912 1.0e-16 90.1 97 56.7
FvH4_5g11670 Fragaria vesca HOM05D000086 ORTHO05D002912 1.0e-16 90.1 96 56.2
FAN18G1358 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.0e-16 90.1 96 56.2
FAN18G4267 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.0e-16 90.1 96 56.2
Lalb_Chr09g0332221 Lupinus albus HOM05D000086 ORTHO05D002912 1.0e-16 90.1 109 54.1
COL.COLO4_25065 Corchorus olitorius HOM05D000086 ORTHO05D002912 1.4e-16 89.7 96 56.2
Thhalv10026391m.g Eutrema salsugineum HOM05D000086 ORTHO05D002912 1.4e-16 89.7 101 57.4
PSO135G0157 Papaver somniferum HOM05D000086 ORTHO05D002912 1.4e-16 89.7 113 51.3
Oeu030887.1 Olea europaea HOM05D000086 ORTHO05D002912 1.8e-16 89.4 91 59.3
AUR62019872 Chenopodium quinoa HOM05D000086 ORTHO05D002912 3.0e-16 88.6 96 52.1
FAN13G2692 Fragaria x ananassa HOM05D000086 ORTHO05D002912 3.0e-16 88.6 96 55.2
Lj6A699T66 Lonicera japonica HOM05D000086 ORTHO05D002912 3.0e-16 88.6 107 52.3
HanXRQChr10g0316891 Helianthus annuus HOM05D000086 ORTHO05D002912 4.0e-16 88.2 108 54.6
PSO384G4716 Papaver somniferum HOM05D000086 ORTHO05D002912 4.0e-16 88.2 113 50.4
Oeu022695.1 Olea europaea HOM05D000086 ORTHO05D002912 5.2e-16 87.8 99 59.6
FAN08G2033 Fragaria x ananassa HOM05D000086 ORTHO05D002912 8.9e-16 87.0 96 55.2
Psat5g108400 Pisum sativum HOM05D000086 ORTHO05D002912 8.9e-16 87.0 97 55.7
Sed0016681 Sechium edule HOM05D000086 ORTHO05D002912 7.5e-15 84.0 103 53.4
TPR.G33602 Trifolium pratense HOM05D000086 ORTHO05D002912 7.5e-15 84.0 92 56.5
A03p54910 Brassica napus HOM05D000086 ORTHO05D002912 9.8e-15 83.6 101 56.4
SGA_v2.0_scaffold64G22042 Striga asiatica HOM05D000086 ORTHO05D002912 2.9e-14 82.0 98 56.1
Glyma.20G066300 Glycine max HOM05D000086 ORTHO05D002912 3.7e-14 81.6 108 54.6
HanXRQChr07g0190771 Helianthus annuus HOM05D000086 ORTHO05D002912 3.7e-14 81.6 108 50.0
BcaC09g50923 Brassica carinata HOM05D000086 ORTHO05D002912 1.1e-13 80.1 97 51.5
C01p19210 Brassica napus HOM05D000086 ORTHO05D002912 1.1e-13 80.1 97 51.5
BolC1t01848H Brassica oleracea HOM05D000086 ORTHO05D002912 1.1e-13 80.1 97 51.5
VMungo0540G0071 Vigna mungo HOM05D000086 ORTHO05D002912 1.1e-13 80.1 113 52.2
RcHm_v2.0_Chr7g0186121 Rosa chinensis HOM05D000086 ORTHO05D002912 2.4e-13 79.0 96 53.1
BraA01t01471Z Brassica rapa HOM05D000086 ORTHO05D002912 3.2e-13 78.6 97 50.5
CSS0008003 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 5.4e-13 77.8 104 48.1
Phvul.006G000700 Phaseolus vulgaris HOM05D000086 ORTHO05D002912 7.0e-13 77.4 98 56.1
CSS0024757 Camellia sinensis var. sinensis HOM05D000086 ORTHO05D002912 1.2e-12 76.6 104 47.1
FAN04G1292 Fragaria x ananassa HOM05D000086 ORTHO05D002912 1.2e-12 76.6 96 51.0
Atru.chr13.2582 Acer truncatum HOM05D000086 ORTHO05D002912 3.9e-11 71.6 100 49.0
Lsat_1_v5_gn_6_9501 Lactuca sativa HOM05D000086 ORTHO05D002912 1.1e-10 70.1 111 45.9
Lj9A695T55 Lonicera japonica HOM05D000086 ORTHO05D002912 1.9e-10 69.3 84 47.6
Sabra13G0081100 Salix brachista HOM05D000086 ORTHO05D002912 1.9e-10 69.3 83 49.4
Ciclev10021842m.g Citrus clementina HOM05D000086 ORTHO05D002912 2.5e-10 68.9 95 43.2
Potri.013G095100 Populus trichocarpa HOM05D000086 ORTHO05D002912 4.3e-10 68.2 82 48.8
Solyc06g064440.3 Solanum lycopersicum HOM05D000086 ORTHO05D002912 4.3e-10 68.2 86 50.0
Cpa.g.sc142.5 Carica papaya HOM05D000086 ORTHO05D002912 5.6e-10 67.8 87 48.3
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 5.6e-10 67.8 98 44.9
Aqoxy7G00064 Aquilegia oxysepala HOM05D000086 ORTHO05D002912 7.3e-10 67.4 105 44.8
Gohir.A03G080900 Gossypium hirsutum HOM05D000086 ORTHO05D002912 7.3e-10 67.4 96 45.8
PGSC0003DMG400033135 Solanum tuberosum HOM05D000086 ORTHO05D002912 7.3e-10 67.4 110 42.7
Cc08_g16350 Coffea canephora HOM05D000086 ORTHO05D002912 1.2e-09 66.6 99 44.4
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 1.2e-09 66.6 82 47.6
Sed0026122 Sechium edule HOM05D000086 ORTHO05D002912 1.6e-09 66.2 106 45.3
MBI06_g32151_MAGBIO Magnolia biondii HOM05D000086 ORTHO05D002912 2.1e-09 65.9 82 47.6
AT1G33480 Arabidopsis thaliana HOM05D000086 ORTHO05D002912 2.8e-09 65.5 100 42.0
Carub.0001s3167 Capsella rubella HOM05D000086 ORTHO05D002912 2.8e-09 65.5 103 42.7
Duzib116G0004 Durio zibethinus HOM05D000086 ORTHO05D002912 3.6e-09 65.1 82 45.1
Nitab4.5_0001489g0050 Nicotiana tabacum HOM05D000086 ORTHO05D002912 3.6e-09 65.1 85 47.1
TAR628G0190 Trochodendron aralioides HOM05D000086 ORTHO05D002912 3.6e-09 65.1 82 47.6
GSVIVG01037142001 Vitis vinifera HOM05D000086 ORTHO05D002912 3.6e-09 65.1 102 43.1
CiPaw.11G117600 Carya illinoinensis HOM05D000086 ORTHO05D002912 4.7e-09 64.7 101 43.6
Peaxi162Scf00818g00319 Petunia axillaris HOM05D000086 ORTHO05D002912 4.7e-09 64.7 107 43.0
Atru.chr9.1938 Acer truncatum HOM05D000086 ORTHO05D002912 6.2e-09 64.3 103 41.7
Lalb_Chr19g0131911 Lupinus albus HOM05D000086 ORTHO05D002912 6.2e-09 64.3 82 45.1
Psat7g229760 Pisum sativum HOM05D000086 ORTHO05D002912 6.2e-09 64.3 85 43.5
TWI12G1094 Tripterygium wilfordii HOM05D000086 ORTHO05D002912 6.2e-09 64.3 105 39.0
Manes.18G109000 Manihot esculenta HOM05D000086 ORTHO05D002912 8.0e-09 63.9 82 43.9
Medtr4g030070 Medicago truncatula HOM05D000086 ORTHO05D002912 1.4e-08 63.2 85 43.5
MSTRG.1610 Avicennia marina HOM05D000086 ORTHO05D002912 1.8e-08 62.8 87 46.0
Aa31LG6G7950 Aethionema arabicum HOM05D000086 ORTHO05D002912 2.3e-08 62.4 82 42.7
Aqoxy5G01852 Aquilegia oxysepala HOM05D000086 ORTHO05D002912 2.3e-08 62.4 82 46.3
ClCG01G001780 Citrullus lanatus HOM05D000086 ORTHO05D002912 3.1e-08 62.0 107 43.9
Hma1.2p1_0016F.1_g010970 Hydrangea macrophylla HOM05D000086 ORTHO05D002912 3.1e-08 62.0 101 41.6
CARHR032920 Cardamine hirsuta HOM05D000086 ORTHO05D002912 4.0e-08 61.6 82 42.7
Nn5g27230 Nelumbo nucifera HOM05D000086 ORTHO05D002912 4.0e-08 61.6 97 41.2
THA.LOC104813084 Tarenaya hassleriana HOM05D000086 ORTHO05D002912 5.2e-08 61.2 100 42.0
TPR.G4399 Trifolium pratense HOM05D000086 ORTHO05D002912 5.2e-08 61.2 84 44.0
Thhalv10009296m.g Eutrema salsugineum HOM05D000086 ORTHO05D002912 6.8e-08 60.8 82 42.7
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 1.2e-07 60.1 82 43.9
Oeu020628.1 Olea europaea HOM05D000086 ORTHO05D002912 2.0e-07 59.3 87 44.8
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 2.6e-07 58.9 82 43.9
BcaC08g43850 Brassica carinata HOM05D000086 ORTHO05D002912 3.4e-07 58.5 84 42.9
C06p12330 Brassica napus HOM05D000086 ORTHO05D002912 3.4e-07 58.5 84 42.9
BolC6t36384H Brassica oleracea HOM05D000086 ORTHO05D002912 3.4e-07 58.5 84 42.9
MELO3C005760.2 Cucumis melo HOM05D000086 ORTHO05D002912 3.4e-07 58.5 40 77.5
CsaV3_5G001920 Cucumis sativus L. HOM05D000086 ORTHO05D002912 3.4e-07 58.5 40 77.5
SMO358G0642 Selaginella moellendorffii HOM05D000086 ORTHO05D002912 3.4e-07 58.5 74 44.6
A09p32790 Brassica napus HOM05D000086 ORTHO05D002912 4.4e-07 58.2 82 42.7
Prupe.8G002900 Prunus persica HOM05D000086 ORTHO05D002912 4.4e-07 58.2 82 41.5
Actinidia29365 Actinidia chinensis HOM05D000086 ORTHO05D002912 7.5e-07 57.4 82 45.1
Nitab4.5_0007335g0030 Nicotiana tabacum HOM05D000086 ORTHO05D002912 7.5e-07 57.4 86 45.3
QL09p001255 Quercus lobata HOM05D000086 ORTHO05D002912 7.5e-07 57.4 80 43.8
Zm00001eb243920 Zea mays HOM05D000086 ORTHO05D002912 7.5e-07 57.4 95 35.8
arahy.Tifrunner.gnm1.ann1.WURL8V Arachis hypogaea HOM05D000086 ORTHO05D002912 9.8e-07 57.0 84 42.9
BraA09t38814Z Brassica rapa HOM05D000086 ORTHO05D002912 9.8e-07 57.0 82 40.2
Nitab4.5_0000079g0170 Nicotiana tabacum HOM05D000086 ORTHO05D002912 9.8e-07 57.0 83 43.4
THA.LOC104815780 Tarenaya hassleriana HOM05D000086 ORTHO05D002912 1.3e-06 56.6 109 35.8
Cc10_g16100 Coffea canephora HOM05D000086 ORTHO05D002912 1.7e-06 56.2 86 40.7
DCAR_002543 Daucus carota HOM05D000086 ORTHO05D002912 1.7e-06 56.2 90 43.3
arahy.Tifrunner.gnm1.ann1.UV0H6R Arachis hypogaea HOM05D000086 ORTHO05D002912 2.2e-06 55.8 84 41.7
Os02g0557300 Oryza sativa ssp. japonica HOM05D000086 ORTHO05D002912 2.2e-06 55.8 82 39.0
Peaxi162Scf00078g01140 Petunia axillaris HOM05D000086 ORTHO05D002912 2.2e-06 55.8 84 41.7
Sp6g07260 Schrenkiella parvula HOM05D000086 ORTHO05D002912 2.9e-06 55.5 85 41.2
AL6G43980 Arabidopsis lyrata HOM05D000086 ORTHO05D002912 3.7e-06 55.1 101 35.6
Lj3g0023405 Lotus japonicus HOM05D000086 ORTHO05D002912 3.7e-06 55.1 89 37.1
VMungo1127G1869 Vigna mungo HOM05D000086 ORTHO05D002912 3.7e-06 55.1 83 41.0
Thhalv10028921m.g Eutrema salsugineum HOM05D000086 ORTHO05D002912 4.9e-06 54.7 98 37.8
EL10Ac1g01285 Beta vulgaris HOM05D000086 ORTHO05D002912 6.4e-06 54.3 90 37.8
GSVIVG01019585001 Vitis vinifera HOM05D000086 ORTHO05D002912 6.4e-06 54.3 69 55.1
Eucgr.F04086 Eucalyptus grandis HOM05D000086 ORTHO05D002912 8.3e-06 53.9 94 37.2


User provided reference genes

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