Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039643 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 8.0e-258 893.3 457 100.0
CSS0000590 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 2.5e-195 685.6 509 76.4
CSS0012094 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 2.5e-195 685.6 509 76.4
vmacro20300 Vaccinium macrocarpon HOM05D006146 ORTHO05D007924 1.3e-154 550.4 517 60.7
Dinv16910 Davidia involucrata HOM05D006146 ORTHO05D007924 2.2e-154 549.7 532 60.3
CSS0031746 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.8e-145 520.0 470 66.4
Cfa017174 Carpinus fangiana HOM05D006146 ORTHO05D007924 8.5e-143 511.1 517 57.4
CSS0015893 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 4.2e-142 508.8 424 68.6
TAR636G3413 Trochodendron aralioides HOM05D006146 ORTHO05D007924 2.1e-141 506.5 513 57.1
Haze_21031 Corylus avellana HOM05D006146 ORTHO05D007924 5.7e-139 498.4 516 57.6
Lj2C71G10 Lonicera japonica HOM05D003030 ORTHO05D003610 3.8e-135 485.7 509 56.0
Peaxi162Scf01132g00127 Petunia axillaris HOM05D006146 ORTHO05D007924 1.9e-134 483.4 516 54.8
Cc06_g01080 Coffea canephora HOM05D006146 ORTHO05D007924 3.2e-134 482.6 513 54.8
QL07p034872 Quercus lobata HOM05D006146 ORTHO05D007924 3.2e-134 482.6 541 53.8
CiPaw.09G211700 Carya illinoinensis HOM05D006146 ORTHO05D007924 2.3e-132 476.5 513 54.4
RcHm_v2.0_Chr3g0462541 Rosa chinensis HOM05D006146 ORTHO05D007924 2.3e-132 476.5 532 52.1
Thecc.05G012100 Theobroma cacao HOM05D006146 ORTHO05D007924 2.6e-131 473.0 542 52.0
Nn2g10908 Nelumbo nucifera HOM05D006146 ORTHO05D007924 5.7e-131 471.9 513 53.8
FAN14G4754 Fragaria x ananassa HOM05D006146 ORTHO05D007924 6.3e-130 468.4 514 52.3
Oeu042663.2 Olea europaea HOM05D006146 ORTHO05D007924 3.1e-129 466.1 527 52.9
CAN.G133.15 Capsicum annuum HOM05D006146 ORTHO05D007924 2.0e-128 463.4 533 51.6
Manes.08G094300 Manihot esculenta HOM05D006146 ORTHO05D007924 2.0e-128 463.4 531 52.7
Prupe.6G280600 Prunus persica HOM05D006146 ORTHO05D007924 3.5e-128 462.6 517 53.2
PGSC0003DMG400006271 Solanum tuberosum HOM05D006146 ORTHO05D007924 3.5e-128 462.6 533 52.0
FvH4_6g11110 Fragaria vesca HOM05D006146 ORTHO05D007924 5.9e-128 461.8 514 52.1
FAN02G2047 Fragaria x ananassa HOM05D006146 ORTHO05D007924 5.9e-128 461.8 514 52.1
MD00G1062300 Malus domestica HOM05D006146 ORTHO05D007924 1.0e-127 461.1 516 52.7
CSS0011042 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 2.5e-126 456.4 424 63.7
Gohir.A09G166500 Gossypium hirsutum HOM05D006146 ORTHO05D007924 2.5e-126 456.4 543 49.7
CANSAT35G1531 Cannabis sativa HOM05D006146 ORTHO05D007924 4.3e-126 455.7 521 53.2
Atru.chr8.2278 Acer truncatum HOM05D006146 ORTHO05D007924 2.8e-125 453.0 512 53.1
TWI53G1621 Tripterygium wilfordii HOM05D006146 ORTHO05D007924 3.6e-125 452.6 522 51.9
Gorai.006G183800 Gossypium raimondii HOM05D006146 ORTHO05D007924 4.7e-125 452.2 550 49.5
Ciclev10011366m.g Citrus clementina HOM05D006146 ORTHO05D007924 8.0e-125 451.4 512 53.3
Gohir.D09G162100 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.5e-123 447.2 543 49.2
Solyc09g005120.3 Solanum lycopersicum HOM05D006146 ORTHO05D007924 3.4e-123 446.0 521 50.5
Sopen09g001100 Solanum pennellii HOM05D006146 ORTHO05D007924 7.5e-123 444.9 519 50.9
MD12G1172300 Malus domestica HOM05D006146 ORTHO05D007924 9.8e-123 444.5 515 51.3
Dinv13137 Davidia involucrata HOM05D006146 ORTHO05D007924 2.2e-122 443.4 466 56.0
Rhsim05G0219200 Rhododendron simsii HOM05D006146 ORTHO05D007924 3.5e-120 436.0 526 52.1
MSTRG.5562 Avicennia marina HOM05D006146 ORTHO05D007924 1.0e-119 434.5 533 49.2
Nitab4.5_0000195g0240 Nicotiana tabacum HOM05D006146 ORTHO05D007924 6.6e-119 431.8 505 51.5
SGA_v2.0_scaffold85G26717 Striga asiatica HOM05D006146 ORTHO05D007924 1.1e-118 431.0 548 48.4
Glyma.18G204000 Glycine max HOM05D006146 ORTHO05D007924 1.9e-118 430.3 530 50.9
Aqoxy4G02469 Aquilegia oxysepala HOM05D006146 ORTHO05D007924 7.3e-118 428.3 531 48.4
Lj1g0005300 Lotus japonicus HOM05D006146 ORTHO05D007924 7.3e-118 428.3 511 51.9
ClCG10G022330 Citrullus lanatus HOM05D006146 ORTHO05D007924 6.2e-117 425.2 525 48.4
ECA236G4528 Erigeron canadensis HOM05D006146 ORTHO05D007924 4.0e-116 422.5 512 49.4
Gohir.A04G093600 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.5e-115 420.6 544 47.6
MELO3C009146.2 Cucumis melo HOM05D006146 ORTHO05D007924 2.0e-115 420.2 512 49.0
PSO384G0066 Papaver somniferum HOM05D006146 ORTHO05D007924 2.0e-115 420.2 516 50.4
CsaV3_3G033560 Cucumis sativus L. HOM05D006146 ORTHO05D007924 4.4e-115 419.1 528 47.2
Gorai.012G116800 Gossypium raimondii HOM05D006146 ORTHO05D007924 5.8e-115 418.7 544 47.4
arahy.Tifrunner.gnm1.ann1.S46L09 Arachis hypogaea HOM05D006146 ORTHO05D007924 2.9e-114 416.4 532 49.6
FAN05G4820 Fragaria x ananassa HOM05D006146 ORTHO05D007924 4.9e-114 415.6 515 48.9
Hund14889 Selenicereus undatus HOM05D006146 ORTHO05D007924 8.3e-114 414.8 538 47.2
Eucgr.A00544 Eucalyptus grandis HOM05D006146 ORTHO05D007924 1.9e-113 413.7 521 48.0
Medtr7g069480 Medicago truncatula HOM05D006146 ORTHO05D007924 3.2e-113 412.9 532 50.0
arahy.Tifrunner.gnm1.ann1.D29HQK Arachis hypogaea HOM05D006146 ORTHO05D007924 9.2e-113 411.4 533 49.5
Eucgr.A00545 Eucalyptus grandis HOM05D006146 ORTHO05D007924 1.2e-112 411.0 491 50.7
Lsat_1_v5_gn_8_100801 Lactuca sativa HOM05D006146 ORTHO05D007924 1.6e-112 410.6 514 48.1
Sed0026013 Sechium edule HOM05D006146 ORTHO05D007924 4.6e-112 409.1 515 48.7
Actinidia11568 Actinidia chinensis HOM05D006146 ORTHO05D007924 6.0e-112 408.7 499 53.7
PSO339G2519 Papaver somniferum HOM05D006146 ORTHO05D007924 7.8e-112 408.3 516 49.4
SalBow5G2678 Salvia bowleyana HOM05D006146 ORTHO05D007924 7.8e-112 408.3 548 47.8
THA.LOC104816204 Tarenaya hassleriana HOM05D006146 ORTHO05D007924 1.7e-111 407.1 511 47.7
AUR62030469 Chenopodium quinoa HOM05D006146 ORTHO05D007924 3.9e-111 406.0 545 47.5
Psat3g126240 Pisum sativum HOM05D006146 ORTHO05D007924 3.9e-111 406.0 539 48.4
MBI03_g05510_MAGBIO Magnolia biondii HOM05D006146 ORTHO05D007924 1.1e-110 404.4 507 49.5
Glyma.07G152900 Glycine max HOM05D006146 ORTHO05D007924 4.3e-110 402.5 513 48.9
Migut.J00133 Erythranthe guttata HOM05D006146 ORTHO05D007924 5.6e-110 402.1 523 48.4
HanXRQChr12g0383181 Helianthus annuus HOM05D006146 ORTHO05D007924 5.6e-110 402.1 519 48.2
Ca_07664_v3 Cicer arietinum L. HOM05D006146 ORTHO05D007924 1.2e-109 401.0 503 49.9
Carub.0003s0810 Capsella rubella HOM05D006146 ORTHO05D007924 3.6e-109 399.4 514 48.8
AL3G19990 Arabidopsis lyrata HOM05D006146 ORTHO05D007924 8.1e-109 398.3 513 47.4
Lalb_Chr03g0043371 Lupinus albus HOM05D006146 ORTHO05D007924 1.8e-108 397.1 521 48.4
Nitab4.5_0003654g0010 Nicotiana tabacum HOM05D006146 ORTHO05D007924 2.3e-108 396.7 509 48.1
EL10Ac5g12530 Beta vulgaris HOM05D006146 ORTHO05D007924 7.5e-107 391.7 532 45.1
AT3G08970 Arabidopsis thaliana HOM05D006146 ORTHO05D007924 4.9e-106 389.0 518 46.9
Thhalv10020374m.g Eutrema salsugineum HOM05D006146 ORTHO05D007924 8.3e-106 388.3 518 46.1
Ah.12g058880 Amaranthus hybridus HOM05D006146 ORTHO05D007924 1.1e-105 387.9 548 44.2
TPR.G35447 Trifolium pratense HOM05D006146 ORTHO05D007924 1.7e-103 380.6 528 47.9
unitig_578.g15902 Utricularia gibba HOM05D003030 ORTHO05D003610 5.1e-103 379.0 515 46.8
CARHR083310 Cardamine hirsuta HOM05D006146 ORTHO05D007924 4.3e-102 375.9 506 48.4
Aa31LG5G18940 Aethionema arabicum HOM05D006146 ORTHO05D007924 1.2e-101 374.4 509 46.4
COL.COLO4_14502 Corchorus olitorius HOM05D006146 ORTHO05D007924 1.1e-100 371.3 471 49.3
GSVIVG01003939001 Vitis vinifera HOM05D006146 ORTHO05D007924 6.8e-100 368.6 375 53.9
AUR62010446 Chenopodium quinoa HOM05D006146 ORTHO05D007924 2.0e-99 367.1 503 45.3
VMungo1383G3422 Vigna mungo HOM05D006146 ORTHO05D007924 3.8e-98 362.8 523 45.9
Potri.016G120000 Populus trichocarpa HOM05D006146 ORTHO05D007924 4.1e-97 359.4 447 49.7
Sp3g07390 Schrenkiella parvula HOM05D006146 ORTHO05D007924 4.1e-97 359.4 516 45.9
PGR031G2778 Punica granatum HOM05D006146 ORTHO05D007924 2.7e-96 356.7 533 44.3
HPP92_025101 Vanilla planifolia HOM05D006146 ORTHO05D007924 2.7e-96 356.7 515 42.9
BraA05t22771Z Brassica rapa HOM05D006146 ORTHO05D007924 4.6e-96 355.9 523 44.6
Gohir.D04G132900 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.7e-95 354.0 596 40.6
Phvul.008G095600 Phaseolus vulgaris HOM05D006146 ORTHO05D007924 6.6e-95 352.1 521 45.7
A05p39870 Brassica napus HOM05D006146 ORTHO05D007924 2.8e-93 346.7 530 44.2
BolC5t34544H Brassica oleracea HOM05D006146 ORTHO05D007924 1.8e-92 344.0 531 41.8
C05p58910 Brassica napus HOM05D006146 ORTHO05D007924 4.0e-92 342.8 531 42.7
SHI12853 Sapria himalayana HOM05D006146 ORTHO05D007924 6.4e-90 335.5 503 42.1
Sabra16G0115900 Salix brachista HOM05D006146 ORTHO05D007924 7.1e-89 332.0 488 46.3
ATR0681G078 Amborella trichopoda HOM05D006146 ORTHO05D007924 3.5e-88 329.7 518 41.5
Zm00001eb396940 Zea mays HOM05D006146 ORTHO05D007924 2.3e-87 327.0 522 41.2
Sc22g0002570 Simmondsia chinensis HOM05D006146 ORTHO05D007924 1.1e-86 324.7 366 49.5
CDE06G0106 Ceratophyllum demersum HOM05D003030 ORTHO05D003610 1.9e-86 323.9 538 39.8
Hma1.2p1_0362F.1_g136590 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 2.1e-85 320.5 264 66.3
DCAR_015389 Daucus carota HOM05D006146 ORTHO05D007924 4.8e-85 319.3 526 42.4
Glyma.16G098700 Glycine max HOM05D006146 ORTHO05D007924 6.9e-84 315.5 399 49.1
BcaC05g29631 Brassica carinata HOM05D006146 ORTHO05D007924 3.4e-83 313.2 499 44.1
Hma1.2p1_0362F.1_g136580 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 1.3e-82 311.2 277 63.2
CSS0030843 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 6.7e-79 298.9 376 50.5
Os03g0293000 Oryza sativa ssp. japonica HOM05D006146 ORTHO05D007924 6.2e-77 292.4 478 40.8
Hund10973 Selenicereus undatus HOM05D006146 ORTHO05D007924 4.5e-59 233.0 330 47.3
QL08p015836 Quercus lobata HOM05D006146 ORTHO05D007924 7.6e-59 232.3 300 49.0
SEGI_31782 Sequoiadendron giganteum HOM05D006146 ORTHO05D007924 5.0e-58 229.6 530 33.4
FAN09G2516 Fragaria x ananassa HOM05D006146 ORTHO05D007924 1.4e-55 221.5 212 56.6
Cpa.g.sc120.50 Carica papaya HOM05D006146 ORTHO05D007924 2.2e-50 204.1 193 57.0
Hund10972 Selenicereus undatus HOM05D006146 ORTHO05D007924 1.8e-47 194.5 211 51.7
Mapoly0184s0019 Marchantia polymorpha HOM05D006146 ORTHO05D007924 3.8e-34 150.2 551 28.7
AagrBONN_evm.TU.Sc2ySwM_228.96 Anthoceros agrestis HOM05D006146 ORTHO05D007924 4.2e-33 146.7 321 31.2
Zm00001eb225170 Zea mays HOM05D006146 ORTHO05D007924 2.6e-30 137.5 161 48.4
Pp3c20_14730 Physcomitrium patens HOM05D006146 ORTHO05D007924 1.7e-29 134.8 559 27.2
SMO347G0184 Selaginella moellendorffii HOM05D006146 ORTHO05D007924 4.1e-28 130.2 535 26.2
Haze_20655 Corylus avellana HOM05D006146 ORTHO05D007924 4.2e-25 120.2 174 44.8
Zm00001eb032720 Zea mays HOM05D006146 ORTHO05D007924 4.0e-23 113.6 172 41.3
QL07p034801 Quercus lobata HOM05D006146 ORTHO05D007924 1.2e-14 85.5 363 28.7
Rhsim01G0279400 Rhododendron simsii HOM05D000036 ORTHO05D005472 8.9e-07 59.3 75 48.0


User provided reference genes

Program Settings