Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039631 Camellia sinensis var. sinensis HOM05D002671 ORTHO05D002985 3.3e-190 668.3 366 100.0
Actinidia34131 Actinidia chinensis HOM05D002671 ORTHO05D002985 8.8e-82 308.1 343 60.6
Actinidia25888 Actinidia chinensis HOM05D002671 ORTHO05D002985 9.1e-79 298.1 343 59.5
vmacro06657 Vaccinium macrocarpon HOM05D002671 ORTHO05D002985 2.5e-68 263.5 342 54.1
Dinv35225 Davidia involucrata HOM05D002671 ORTHO05D002985 1.2e-62 244.6 333 53.5
TAR629G3527 Trochodendron aralioides HOM05D002671 ORTHO05D002985 4.4e-57 226.1 344 49.1
Nn6g33416 Nelumbo nucifera HOM05D002671 ORTHO05D002985 8.3e-56 221.9 315 48.9
Nn1g01540 Nelumbo nucifera HOM05D002671 ORTHO05D002985 3.5e-54 216.5 326 48.2
GSVIVG01028910001 Vitis vinifera HOM05D002671 ORTHO05D002985 5.0e-53 212.6 344 47.4
Duzib205G1095 Durio zibethinus HOM05D002671 ORTHO05D002985 3.7e-48 196.4 307 48.2
TAR375G0227 Trochodendron aralioides HOM05D002671 ORTHO05D002985 1.1e-47 194.9 267 52.1
PGR042G0877 Punica granatum HOM05D002671 ORTHO05D002985 1.4e-47 194.5 298 45.0
Gohir.A12G256200 Gossypium hirsutum HOM05D002671 ORTHO05D002985 9.2e-47 191.8 324 45.4
Lj1C1001T3 Lonicera japonica HOM05D002671 ORTHO05D002985 1.6e-46 191.0 363 45.2
Potri.015G146100 Populus trichocarpa HOM05D002671 ORTHO05D002985 2.7e-46 190.3 363 43.0
Prupe.2G297300 Prunus persica HOM05D002671 ORTHO05D002985 6.8e-42 175.6 325 42.2
Atru.chr1.423 Acer truncatum HOM05D002671 ORTHO05D002985 8.9e-42 175.3 320 44.4
Thecc.03G179800 Theobroma cacao HOM05D002671 ORTHO05D002985 9.8e-41 171.8 325 44.0
Nitab4.5_0004439g0010 Nicotiana tabacum HOM05D002671 ORTHO05D002985 3.7e-40 169.9 249 49.4
Cpa.g.sc107.74 Carica papaya HOM05D002671 ORTHO05D002985 1.9e-39 167.5 312 41.3
Nitab4.5_0000084g0090 Nicotiana tabacum HOM05D002671 ORTHO05D002985 3.2e-39 166.8 251 49.4
MBI17_g24688_MAGBIO Magnolia biondii HOM05D002671 ORTHO05D002985 7.0e-39 165.6 263 45.2
Aqoxy7G00300 Aquilegia oxysepala HOM05D002671 ORTHO05D002985 9.2e-39 165.2 290 43.4
Ciclev10006475m.g Citrus clementina HOM05D002671 ORTHO05D002985 2.7e-38 163.7 298 45.0
CANSAT21G0228 Cannabis sativa HOM05D002671 ORTHO05D002985 4.6e-38 162.9 272 43.8
Manes.06G149700 Manihot esculenta HOM05D002671 ORTHO05D002985 6.6e-37 159.1 334 40.4
PGSC0003DMG400015798 Solanum tuberosum HOM05D002671 ORTHO05D002985 1.1e-36 158.3 301 43.2
Peaxi162Scf00444g00423 Petunia axillaris HOM05D002671 ORTHO05D002985 1.9e-36 157.5 297 43.4
Cc02_g02720 Coffea canephora HOM05D002671 ORTHO05D002985 2.5e-36 157.1 243 50.2
Gorai.008G275800 Gossypium raimondii HOM05D002671 ORTHO05D002985 1.2e-35 154.8 329 40.7
CiPaw.05G264200 Carya illinoinensis HOM05D002671 ORTHO05D002985 2.1e-35 154.1 285 43.5
COL.COLO4_28046 Corchorus olitorius HOM05D002671 ORTHO05D002985 3.6e-35 153.3 142 68.3
MD07G1273400 Malus domestica HOM05D002671 ORTHO05D002985 6.2e-35 152.5 335 39.4
Gohir.D12G257550 Gossypium hirsutum HOM05D002671 ORTHO05D002985 1.4e-34 151.4 329 40.1
MD01G1204900 Malus domestica HOM05D002671 ORTHO05D002985 3.1e-34 150.2 309 38.5
FAN06G0467 Fragaria x ananassa HOM05D002671 ORTHO05D002985 8.9e-34 148.7 279 41.6
FvH4_7g29830 Fragaria vesca HOM05D002671 ORTHO05D002985 2.6e-33 147.1 279 41.2
CAN.G1175.13 Capsicum annuum HOM05D002671 ORTHO05D002985 3.4e-33 146.7 292 40.4
CDE06G2833 Ceratophyllum demersum HOM05D002671 ORTHO05D002985 4.4e-33 146.4 228 46.5
Eucgr.A02769 Eucalyptus grandis HOM05D002671 ORTHO05D002985 4.4e-33 146.4 306 38.9
Cfa016260 Carpinus fangiana HOM05D002671 ORTHO05D002985 1.7e-32 144.4 270 41.9
Haze_00012 Corylus avellana HOM05D002671 ORTHO05D002985 2.9e-32 143.7 281 43.1
FAN03G2117 Fragaria x ananassa HOM05D002671 ORTHO05D002985 6.4e-32 142.5 250 43.2
Sopen03g004300 Solanum pennellii HOM05D002671 ORTHO05D002985 6.4e-32 142.5 303 38.9
FAN06G4738 Fragaria x ananassa HOM05D002671 ORTHO05D002985 8.3e-32 142.1 286 39.5
Solyc03g025460.3 Solanum lycopersicum HOM05D002671 ORTHO05D002985 1.4e-31 141.4 303 38.0
AUR62003420 Chenopodium quinoa HOM05D002671 ORTHO05D002985 1.9e-31 141.0 255 42.7
Sabra15G0155400 Salix brachista HOM05D002671 ORTHO05D002985 2.4e-31 140.6 373 37.5
FAN03G3084 Fragaria x ananassa HOM05D002671 ORTHO05D002985 3.2e-31 140.2 246 43.9
Medtr1g100880 Medicago truncatula HOM05D002671 ORTHO05D002985 3.2e-31 140.2 218 46.8
FAN10G2158 Fragaria x ananassa HOM05D002671 ORTHO05D002985 5.4e-31 139.4 286 37.8
Hund11735 Selenicereus undatus HOM05D002671 ORTHO05D002985 5.4e-31 139.4 305 40.0
Lj5g0013689 Lotus japonicus HOM05D002671 ORTHO05D002985 7.1e-31 139.0 215 46.0
AUR62029421 Chenopodium quinoa HOM05D002671 ORTHO05D002985 2.7e-30 137.1 241 44.0
FAN10G0021 Fragaria x ananassa HOM05D002671 ORTHO05D002985 4.6e-30 136.3 286 37.4
TPR.G26973 Trifolium pratense HOM05D002671 ORTHO05D002985 4.6e-30 136.3 202 48.5
RcHm_v2.0_Chr1g0377801 Rosa chinensis HOM05D002671 ORTHO05D002985 6.0e-30 136.0 322 36.6
EL10Ac3g05602 Beta vulgaris HOM05D002671 ORTHO05D002985 1.0e-29 135.2 243 42.8
PSO478G4759 Papaver somniferum HOM05D002671 ORTHO05D002985 5.1e-29 132.9 303 38.3
TWI39G0831 Tripterygium wilfordii HOM05D002671 ORTHO05D002985 1.9e-28 131.0 308 39.9
FAN01G0120 Fragaria x ananassa HOM05D002671 ORTHO05D002985 3.3e-28 130.2 280 39.3
Glyma.20G160800 Glycine max HOM05D002671 ORTHO05D002985 4.3e-28 129.8 224 45.1
ATR0680G142 Amborella trichopoda HOM05D002671 ORTHO05D002985 7.3e-28 129.0 196 45.9
Glyma.10G233600 Glycine max HOM05D002671 ORTHO05D002985 1.1e-26 125.2 200 46.0
Sc19g0001400 Simmondsia chinensis HOM05D002671 ORTHO05D002985 1.4e-26 124.8 287 38.7
Ca_10743_v3 Cicer arietinum L. HOM05D002671 ORTHO05D002985 2.6e-25 120.6 206 45.1
PSO782G0118 Papaver somniferum HOM05D002671 ORTHO05D002985 3.4e-25 120.2 250 40.8
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 7.6e-25 119.0 237 40.9
Psat6g197240 Pisum sativum HOM05D002671 ORTHO05D002985 3.8e-24 116.7 216 43.5
Ah.13g068840 Amaranthus hybridus HOM05D002671 ORTHO05D002985 1.4e-23 114.8 237 37.1
Phvul.007G072200 Phaseolus vulgaris HOM05D002671 ORTHO05D002985 1.6e-22 111.3 220 41.4
arahy.Tifrunner.gnm1.ann1.EY481C Arachis hypogaea HOM05D002671 ORTHO05D002985 2.1e-22 110.9 207 42.5
Oeu028435.1 Olea europaea HOM05D002671 ORTHO05D002985 1.8e-18 97.8 86 68.6
SEGI_36472 Sequoiadendron giganteum HOM05D002671 ORTHO05D002985 9.9e-17 92.0 207 37.2
Os08g0559800 Oryza sativa ssp. japonica HOM05D002671 ORTHO05D002985 6.4e-16 89.4 149 40.9
Rhsim03G0188000 Rhododendron simsii HOM05D002671 ORTHO05D002985 1.9e-15 87.8 217 37.3
Sp5g13020 Schrenkiella parvula HOM05D002671 ORTHO05D002985 1.7e-13 81.3 267 36.0
AT3G49055 Arabidopsis thaliana HOM05D002671 ORTHO05D002985 5.1e-13 79.7 304 29.6
THA.LOC104798626 Tarenaya hassleriana HOM05D002671 ORTHO05D002985 1.4e-10 71.6 210 34.8
Thhalv10010995m.g Eutrema salsugineum HOM05D002671 ORTHO05D002985 6.9e-10 69.3 286 29.7
AL5G28570 Arabidopsis lyrata HOM05D002671 ORTHO05D002985 9.0e-10 68.9 329 27.7
THA.LOC104820571 Tarenaya hassleriana HOM05D002671 ORTHO05D002985 4.5e-09 66.6 228 32.5
CARHR157880 Cardamine hirsuta HOM05D002671 ORTHO05D002985 4.9e-08 63.2 300 29.0
BcaB01g00755 Brassica carinata HOM05D002671 ORTHO05D002985 3.2e-07 60.5 111 39.6
BcaB01g00757 Brassica carinata HOM05D002671 ORTHO05D002985 5.4e-07 59.7 126 38.1
HanXRQChr17g0539881 Helianthus annuus HOM05D002671 ORTHO05D002985 7.1e-07 59.3 162 32.1
SEGI_37581 Sequoiadendron giganteum HOM05D002671 ORTHO05D002985 9.3e-07 58.9 249 26.1
BraA06t24952Z Brassica rapa HOM05D002671 ORTHO05D002985 2.7e-06 57.4 65 53.8


User provided reference genes

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