Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039623 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 5.1e-165 584.3 296 100.0
Dinv30262 Davidia involucrata HOM05D005681 ORTHO05D007274 6.8e-133 477.6 296 83.1
Actinidia13315 Actinidia chinensis HOM05D005681 ORTHO05D007274 8.8e-133 477.2 296 82.1
Actinidia31229 Actinidia chinensis HOM05D005681 ORTHO05D007274 1.7e-131 473.0 296 80.4
Dinv14236 Davidia involucrata HOM05D005681 ORTHO05D007274 7.3e-127 457.6 297 80.5
Hma1.2p1_0140F.1_g063453 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 1.6e-126 456.4 296 77.7
Hma1.2p1_0140F.1_g063456 Hydrangea macrophylla HOM05D005681 ORTHO05D007274 1.6e-126 456.4 296 77.7
Peaxi162Scf00523g00017 Petunia axillaris HOM05D005681 ORTHO05D007274 9.2e-122 440.7 302 74.5
CiPaw.08G024200 Carya illinoinensis HOM05D005681 ORTHO05D007274 4.6e-121 438.3 298 74.2
GSVIVG01035659001 Vitis vinifera HOM05D005681 ORTHO05D007274 7.8e-121 437.6 293 74.4
Nitab4.5_0000052g0240 Nicotiana tabacum HOM05D005681 ORTHO05D007274 5.0e-120 434.9 306 72.9
Ciclev10009066m.g Citrus clementina HOM05D005681 ORTHO05D007274 1.1e-119 433.7 297 72.7
Gorai.010G110300 Gossypium raimondii HOM05D005681 ORTHO05D007274 1.1e-119 433.7 297 73.4
Gohir.A06G095700 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.9e-119 433.0 297 73.1
TWI32G1178 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 3.3e-119 432.2 297 73.7
Rhsim07G0152800 Rhododendron simsii HOM05D005681 ORTHO05D007274 4.3e-119 431.8 296 76.7
TAR626G1886 Trochodendron aralioides HOM05D005681 ORTHO05D007274 4.3e-119 431.8 296 73.6
Cc08_g09110 Coffea canephora HOM05D005681 ORTHO05D007274 5.6e-119 431.4 305 72.5
Solyc08g068350.3 Solanum lycopersicum HOM05D005681 ORTHO05D007274 7.3e-119 431.0 305 72.5
Nitab4.5_0011506g0010 Nicotiana tabacum HOM05D005681 ORTHO05D007274 1.6e-118 429.9 306 72.9
Sopen08g022200 Solanum pennellii HOM05D005681 ORTHO05D007274 4.7e-118 428.3 308 71.4
TWI34G0866 Tripterygium wilfordii HOM05D005681 ORTHO05D007274 1.0e-117 427.2 286 74.5
CSS0012406 Camellia sinensis var. sinensis HOM05D005681 ORTHO05D007274 1.8e-117 426.4 287 77.4
Duzib150G0332 Durio zibethinus HOM05D005681 ORTHO05D007274 3.1e-117 425.6 297 73.1
PGSC0003DMG400010842 Solanum tuberosum HOM05D005681 ORTHO05D007274 2.0e-116 422.9 308 70.8
THA.LOC104803765 Tarenaya hassleriana HOM05D005681 ORTHO05D007274 2.0e-116 422.9 298 72.8
Glyma.06G082600 Glycine max HOM05D005681 ORTHO05D007274 5.8e-116 421.4 296 70.6
Atru.chr7.2148 Acer truncatum HOM05D005681 ORTHO05D007274 7.5e-116 421.0 296 71.6
vmacro05364 Vaccinium macrocarpon HOM05D005681 ORTHO05D007274 9.8e-116 420.6 281 76.2
Ca_15613_v3 Cicer arietinum L. HOM05D005681 ORTHO05D007274 1.3e-115 420.2 296 70.9
Lalb_Chr08g0243221 Lupinus albus HOM05D005681 ORTHO05D007274 1.3e-115 420.2 299 70.2
Lj1g0012145 Lotus japonicus HOM05D005681 ORTHO05D007274 1.7e-115 419.9 297 70.7
QL12p029589 Quercus lobata HOM05D005681 ORTHO05D007274 1.7e-115 419.9 294 71.1
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 2.2e-115 419.5 289 73.0
Manes.03G061300 Manihot esculenta HOM05D005681 ORTHO05D007274 2.2e-115 419.5 297 72.1
CAN.G21.34 Capsicum annuum HOM05D005681 ORTHO05D007274 2.9e-115 419.1 310 70.0
Psat0s2259g0040 Pisum sativum HOM05D005681 ORTHO05D007274 3.7e-115 418.7 296 71.3
Medtr3g110075 Medicago truncatula HOM05D005681 ORTHO05D007274 6.4e-115 417.9 293 71.3
PSO566G0344 Papaver somniferum HOM05D005681 ORTHO05D007274 6.4e-115 417.9 295 71.2
Glyma.04G080900 Glycine max HOM05D005681 ORTHO05D007274 8.3e-115 417.5 296 69.9
Lsat_1_v5_gn_5_33341 Lactuca sativa HOM05D005681 ORTHO05D007274 5.4e-114 414.8 307 70.0
Sc23g0005990 Simmondsia chinensis HOM05D005681 ORTHO05D007274 5.4e-114 414.8 285 74.4
Potri.006G241200 Populus trichocarpa HOM05D005681 ORTHO05D007274 7.0e-114 414.5 296 72.6
PGR044G0773 Punica granatum HOM05D005681 ORTHO05D007274 1.2e-113 413.7 296 70.6
Gohir.A05G047800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 2.7e-113 412.5 297 69.0
SalBow4G0279 Salvia bowleyana HOM05D005681 ORTHO05D007274 2.7e-113 412.5 303 69.6
PSO782G3698 Papaver somniferum HOM05D005681 ORTHO05D007274 3.5e-113 412.1 296 69.9
Gorai.009G051200 Gossypium raimondii HOM05D005681 ORTHO05D007274 1.7e-112 409.8 297 69.0
Eucgr.C02898 Eucalyptus grandis HOM05D005681 ORTHO05D007274 5.0e-112 408.3 297 71.7
Thecc.09G041100 Theobroma cacao HOM05D005681 ORTHO05D007274 6.6e-112 407.9 297 70.7
VMungo1309G2636 Vigna mungo HOM05D005681 ORTHO05D007274 8.6e-112 407.5 298 69.1
arahy.Tifrunner.gnm1.ann1.M4G12U Arachis hypogaea HOM05D005681 ORTHO05D007274 1.9e-111 406.4 295 66.8
Gohir.D05G049900 Gossypium hirsutum HOM05D005681 ORTHO05D007274 1.9e-111 406.4 297 68.7
EL10Ac2g04057 Beta vulgaris HOM05D005681 ORTHO05D007274 4.3e-111 405.2 297 67.7
TPR.G1346 Trifolium pratense HOM05D005681 ORTHO05D007274 4.3e-111 405.2 298 67.8
ClCG08G012350 Citrullus lanatus HOM05D005681 ORTHO05D007274 5.6e-111 404.8 296 69.9
arahy.Tifrunner.gnm1.ann1.Z4VD8H Arachis hypogaea HOM05D005681 ORTHO05D007274 9.5e-111 404.1 295 66.1
MD15G1096600 Malus domestica HOM05D005681 ORTHO05D007274 9.5e-111 404.1 279 74.2
AUR62009315 Chenopodium quinoa HOM05D005681 ORTHO05D007274 1.2e-110 403.7 293 68.3
SGA_v2.0_scaffold243G44291 Striga asiatica HOM05D005681 ORTHO05D007274 2.1e-110 402.9 313 67.7
Aqoxy7G01593 Aquilegia oxysepala HOM05D005681 ORTHO05D007274 4.7e-110 401.7 296 67.6
MELO3C011155.2 Cucumis melo HOM05D005681 ORTHO05D007274 4.7e-110 401.7 297 69.4
MSTRG.25900 Avicennia marina HOM05D005681 ORTHO05D007274 1.4e-109 400.2 302 68.5
Potri.018G038600 Populus trichocarpa HOM05D005681 ORTHO05D007274 3.1e-109 399.1 296 69.6
Migut.A00229 Erythranthe guttata HOM05D005681 ORTHO05D007274 5.2e-109 398.3 304 67.4
Nn3g18081 Nelumbo nucifera HOM05D005681 ORTHO05D007274 5.2e-109 398.3 281 71.2
Phvul.009G107000 Phaseolus vulgaris HOM05D005681 ORTHO05D007274 5.2e-109 398.3 296 68.6
Prupe.1G451500 Prunus persica HOM05D005681 ORTHO05D007274 5.2e-109 398.3 279 73.1
CARHR240740 Cardamine hirsuta HOM05D005681 ORTHO05D007274 6.8e-109 397.9 295 70.2
AL7G19000 Arabidopsis lyrata HOM05D005681 ORTHO05D007274 1.2e-108 397.1 295 71.2
Haze_21866 Corylus avellana HOM05D005681 ORTHO05D007274 1.5e-108 396.7 373 57.6
RcHm_v2.0_Chr6g0305881 Rosa chinensis HOM05D005681 ORTHO05D007274 1.5e-108 396.7 282 72.7
AT4G32750 Arabidopsis thaliana HOM05D005681 ORTHO05D007274 4.4e-108 395.2 296 70.6
Hund03415 Selenicereus undatus HOM05D005681 ORTHO05D007274 4.4e-108 395.2 296 67.2
Carub.0007s0774 Capsella rubella HOM05D005681 ORTHO05D007274 7.5e-108 394.4 295 69.2
Sabra18G0039000 Salix brachista HOM05D005681 ORTHO05D007274 9.8e-108 394.0 296 68.9
COL.COLO4_18685 Corchorus olitorius HOM05D005681 ORTHO05D007274 2.9e-107 392.5 319 64.9
Sed0026422 Sechium edule HOM05D005681 ORTHO05D007274 2.9e-107 392.5 298 67.8
Aa31LG2G17210 Aethionema arabicum HOM05D005681 ORTHO05D007274 1.9e-106 389.8 294 69.4
BcaB03g12761 Brassica carinata HOM05D005681 ORTHO05D007274 2.4e-106 389.4 296 68.6
MBI01_g15703_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 2.4e-106 389.4 296 70.3
Ah.10g035130 Amaranthus hybridus HOM05D005681 ORTHO05D007274 4.1e-106 388.7 284 68.7
FAN20G2636 Fragaria x ananassa HOM05D005681 ORTHO05D007274 9.2e-106 387.5 281 71.5
Lj7A706G35 Lonicera japonica HOM05D005681 ORTHO05D007274 9.2e-106 387.5 301 69.1
FvH4_2g35990 Fragaria vesca HOM05D005681 ORTHO05D007274 2.1e-105 386.3 281 71.5
Sabra06G0188600 Salix brachista HOM05D005681 ORTHO05D007274 2.7e-105 386.0 296 67.6
Sp7g30510 Schrenkiella parvula HOM05D005681 ORTHO05D007274 1.7e-104 383.3 295 68.1
Sed0017759 Sechium edule HOM05D005681 ORTHO05D007274 1.7e-104 383.3 293 66.9
Thhalv10025880m.g Eutrema salsugineum HOM05D005681 ORTHO05D007274 2.3e-104 382.9 296 68.6
BolC3t21001H Brassica oleracea HOM05D005681 ORTHO05D007274 3.0e-104 382.5 297 68.4
C03p87050 Brassica napus HOM05D005681 ORTHO05D007274 5.1e-104 381.7 297 68.4
A08p17930 Brassica napus HOM05D005681 ORTHO05D007274 8.6e-104 380.9 297 68.7
BraA08t33745Z Brassica rapa HOM05D005681 ORTHO05D007274 8.6e-104 380.9 297 68.7
MD08G1117000 Malus domestica HOM05D005681 ORTHO05D007274 1.4e-98 363.6 275 69.5
Nn2g11688 Nelumbo nucifera HOM05D005681 ORTHO05D007274 1.4e-98 363.6 248 73.4
Cpa.g.sc78.73 Carica papaya HOM05D005681 ORTHO05D007274 2.1e-97 359.8 450 48.0
ATR0315G043 Amborella trichopoda HOM05D005681 ORTHO05D007274 1.3e-96 357.1 294 63.6
HanXRQChr08g0236281 Helianthus annuus HOM05D005681 ORTHO05D007274 5.1e-96 355.1 296 65.2
CANSAT80G1365 Cannabis sativa HOM05D005681 ORTHO05D007274 9.6e-95 350.9 297 63.3
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 2.6e-92 342.8 257 69.6
ECA246G0085 Erigeron canadensis HOM05D005681 ORTHO05D007274 8.4e-91 337.8 264 68.2
HPP92_006301 Vanilla planifolia HOM05D005681 ORTHO05D007274 1.0e-88 330.9 296 58.1
HPP92_006306 Vanilla planifolia HOM05D005681 ORTHO05D007274 1.3e-88 330.5 296 58.4
BcaC09g52069 Brassica carinata HOM05D005681 ORTHO05D007274 2.1e-86 323.2 274 62.8
CsaV3_2G031020 Cucumis sativus L. HOM05D005681 ORTHO05D007274 1.1e-85 320.9 196 79.6
A01p05570 Brassica napus HOM05D005681 ORTHO05D007274 2.4e-82 309.7 294 60.5
Os02g0272400 Oryza sativa ssp. japonica HOM05D005681 ORTHO05D007274 7.1e-82 308.1 301 57.1
BolC7t46377H Brassica oleracea HOM05D005681 ORTHO05D007274 7.9e-81 304.7 211 71.6
Dinv30480 Davidia involucrata HOM05D005681 ORTHO05D007274 3.0e-80 302.8 261 60.5
Gohir.D06G095800 Gossypium hirsutum HOM05D005681 ORTHO05D007274 2.4e-77 293.1 206 71.4
Zm00001eb203450 Zea mays HOM05D005681 ORTHO05D007274 4.5e-76 288.9 302 53.6
AUR62043614 Chenopodium quinoa HOM05D005681 ORTHO05D007274 7.6e-76 288.1 295 53.2
AUR62029668 Chenopodium quinoa HOM05D005681 ORTHO05D007274 1.1e-74 284.3 295 52.9
CDE04G0437 Ceratophyllum demersum HOM05D005681 ORTHO05D007274 1.8e-72 276.9 276 52.2
DCAR_000748 Daucus carota HOM05D005681 ORTHO05D007274 3.0e-72 276.2 166 78.9
Oeu008286.1 Olea europaea HOM05D005681 ORTHO05D007274 1.8e-69 266.9 168 78.6
Duzib168G1957 Durio zibethinus HOM05D005681 ORTHO05D007274 3.1e-69 266.2 277 54.2
AagrBONN_evm.TU.Sc2ySwM_362.2150 Anthoceros agrestis HOM05D005681 ORTHO05D007274 1.0e-67 261.2 276 50.4
Oeu008289.1 Olea europaea HOM05D005681 ORTHO05D007274 2.5e-66 256.5 168 76.2
Lsat_1_v5_gn_1_49740 Lactuca sativa HOM05D005681 ORTHO05D007274 7.1e-66 255.0 280 51.4
BcaNung03601 Brassica carinata HOM05D005681 ORTHO05D007274 2.7e-65 253.1 256 57.0
Mapoly0093s0011 Marchantia polymorpha HOM05D005681 ORTHO05D007274 4.6e-65 252.3 304 48.0
Pp3c7_12500 Physcomitrium patens HOM05D005681 ORTHO05D007274 3.3e-63 246.1 272 50.0
Pp3c2_21260 Physcomitrium patens HOM05D005681 ORTHO05D007274 7.6e-60 235.0 275 49.5
SMO347G0207 Selaginella moellendorffii HOM05D005681 ORTHO05D007274 3.6e-57 226.1 276 47.5
C07p59310 Brassica napus HOM05D005681 ORTHO05D007274 5.7e-55 218.8 264 52.3
BraA01t00528Z Brassica rapa HOM05D005681 ORTHO05D007274 1.6e-54 217.2 167 71.9
BcaNung04523 Brassica carinata HOM05D005681 ORTHO05D007274 3.6e-49 199.5 215 55.3
AUR62043618 Chenopodium quinoa HOM05D005681 ORTHO05D007274 1.9e-42 177.2 117 73.5
Oeu012191.1 Olea europaea HOM05D005681 ORTHO05D007274 2.6e-31 140.2 135 53.3
MBI01_g30752_MAGBIO Magnolia biondii HOM05D005681 ORTHO05D007274 4.4e-31 139.4 136 57.4
Oeu031829.2 Olea europaea HOM05D005681 ORTHO05D007274 1.0e-19 101.7 130 42.3
ATR0051G031 Amborella trichopoda HOM05D005681 ORTHO05D007274 1.2e-15 88.2 98 51.0
A03p61560 Brassica napus HOM05D005681 ORTHO05D040333 1.5e-15 87.8 244 36.1
BraA03t15198Z Brassica rapa HOM05D005681 ORTHO05D040333 2.9e-11 73.6 181 37.6
ATR0326G034 Amborella trichopoda HOM05D005681 ORTHO05D068436 9.8e-07 58.5 60 41.7


User provided reference genes

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