Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039618 Camellia sinensis var. sinensis HOM05D026604 ORTHO05D010247 9.6e-65 250.4 162 100.0
CSS0045054 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D010247 1.0e-45 187.2 127 81.9
Rhsim06G0236400 Rhododendron simsii HOM05D000054 ORTHO05D000286 2.2e-24 116.3 80 76.2
Aqoxy1G01465 Aquilegia oxysepala HOM05D000054 ORTHO05D000286 9.1e-23 110.9 87 62.1
vmacro11712 Vaccinium macrocarpon HOM05D000054 ORTHO05D000286 1.0e-21 107.5 104 60.6
CAN.G943.46 Capsicum annuum HOM05D000054 ORTHO05D000286 1.3e-21 107.1 90 64.4
Solyc07g066550.4 Solanum lycopersicum HOM05D000054 ORTHO05D000286 1.7e-21 106.7 82 68.3
Sopen07g034710 Solanum pennellii HOM05D000054 ORTHO05D000171 1.7e-21 106.7 82 68.3
CAN.G943.47 Capsicum annuum HOM05D000054 ORTHO05D000286 2.2e-21 106.3 90 63.3
Thecc.06G134900 Theobroma cacao HOM05D000054 ORTHO05D000286 6.5e-21 104.8 104 53.8
Thecc.06G134600 Theobroma cacao HOM05D000054 ORTHO05D000286 1.2e-19 100.5 104 51.9
TAR626G0314 Trochodendron aralioides HOM05D000054 ORTHO05D000286 1.2e-19 100.5 99 56.6
Thhalv10000587m.g Eutrema salsugineum HOM05D000054 ORTHO05D000286 6.1e-19 98.2 99 48.5
MBI18_g31328_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D010247 6.1e-19 98.2 112 52.7
FvH4_3g15430 Fragaria vesca HOM05D000054 ORTHO05D000286 1.4e-18 97.1 109 57.8
Gohir.A07G117800 Gossypium hirsutum HOM05D000054 ORTHO05D000286 6.8e-18 94.7 94 54.3
MBI14_g17546_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000171 1.2e-17 94.0 70 61.4
Gohir.D01G080900 Gossypium hirsutum HOM05D000054 ORTHO05D000286 1.5e-17 93.6 115 51.3
MBI18_g46064_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D010247 2.6e-17 92.8 70 60.0
SEGI_09417 Sequoiadendron giganteum HOM05D013967 ORTHO05D010247 3.4e-17 92.4 97 50.5
PSO339G0122 Papaver somniferum HOM05D000054 ORTHO05D000286 4.4e-17 92.0 115 47.0
ATR0763G021 Amborella trichopoda HOM05D000054 ORTHO05D000286 9.8e-17 90.9 73 61.6
Gorai.011G052100 Gossypium raimondii HOM05D000054 ORTHO05D000286 4.8e-16 88.6 89 53.9
Gohir.A10G048100 Gossypium hirsutum HOM05D000054 ORTHO05D000286 1.1e-15 87.4 89 52.8
QL04p065535 Quercus lobata HOM05D000054 ORTHO05D000286 1.1e-15 87.4 92 53.3
MBI18_g22098_MAGBIO Magnolia biondii HOM05D013967 ORTHO05D010247 1.6e-14 83.6 110 46.4
Rhsim06G0240800 Rhododendron simsii HOM05D000054 ORTHO05D000286 1.6e-14 83.6 48 89.6
ATR0763G177 Amborella trichopoda HOM05D013967 ORTHO05D010247 2.0e-14 83.2 60 65.0
SalBow7G2553 Salvia bowleyana HOM05D000054 ORTHO05D000171 2.0e-14 83.2 100 43.0
Gorai.011G052000 Gossypium raimondii HOM05D000054 ORTHO05D000286 4.5e-14 82.0 89 49.4
SEGI_03448 Sequoiadendron giganteum HOM05D026604 ORTHO05D010247 1.3e-13 80.5 87 48.3
Lj2A339T47 Lonicera japonica HOM05D000054 ORTHO05D000171 1.7e-13 80.1 74 58.1
DCAR_017104 Daucus carota HOM05D000054 ORTHO05D000286 3.8e-13 79.0 82 52.4
Os04g0616400 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000286 6.5e-13 78.2 89 50.6
HanXRQChr11g0335741 Helianthus annuus HOM05D000054 ORTHO05D000286 1.1e-12 77.4 88 46.6
HanXRQChr11g0335791 Helianthus annuus HOM05D000054 ORTHO05D000171 1.1e-12 77.4 88 46.6
RcHm_v2.0_Chr5g0025931 Rosa chinensis HOM05D000054 ORTHO05D000286 1.1e-12 77.4 56 73.2
Rhsim06G0240900 Rhododendron simsii HOM05D000054 ORTHO05D000286 2.5e-12 76.3 55 72.7
Os04g0616500 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000286 4.2e-12 75.5 89 48.3
Prupe.4G136900 Prunus persica HOM05D000054 ORTHO05D000171 5.5e-12 75.1 52 75.0
RcHm_v2.0_Chr2g0114861 Rosa chinensis HOM05D000054 ORTHO05D010039 9.5e-12 74.3 57 70.2
GSVIVG01029728001 Vitis vinifera HOM05D013967 ORTHO05D010247 9.5e-12 74.3 68 58.8
RcHm_v2.0_Chr2g0114641 Rosa chinensis HOM05D000054 ORTHO05D000286 2.7e-11 72.8 58 65.5
Os04g0616700 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000171 4.7e-11 72.0 89 46.1
FAN25G2179 Fragaria x ananassa HOM05D000054 ORTHO05D000171 6.1e-11 71.6 55 67.3
Rhsim09G0135300 Rhododendron simsii HOM05D000054 ORTHO05D000286 8.0e-11 71.2 59 67.8
Gorai.002G105800 Gossypium raimondii HOM05D000054 ORTHO05D000286 1.4e-10 70.5 54 70.4
Gorai.011G052400 Gossypium raimondii HOM05D000054 ORTHO05D000286 1.4e-10 70.5 73 50.7
Lsat_1_v5_gn_7_111881 Lactuca sativa HOM05D000054 ORTHO05D000286 1.4e-10 70.5 54 66.7
RcHm_v2.0_Chr2g0114711 Rosa chinensis HOM05D000054 ORTHO05D000286 3.0e-10 69.3 55 69.1
Lsat_1_v5_gn_7_111801 Lactuca sativa HOM05D000054 ORTHO05D000286 4.0e-10 68.9 59 57.6
SalBow5G0857 Salvia bowleyana HOM05D000054 ORTHO05D000286 4.0e-10 68.9 73 53.4
SalBow5G1041 Salvia bowleyana HOM05D000054 ORTHO05D000286 4.0e-10 68.9 73 53.4
Thecc.06G134700 Theobroma cacao HOM05D000054 ORTHO05D000286 4.0e-10 68.9 89 46.1
Gohir.A10G047633 Gossypium hirsutum HOM05D000054 ORTHO05D000286 5.2e-10 68.6 79 45.6
HanXRQChr04g0123581 Helianthus annuus HOM05D000054 ORTHO05D010247 6.8e-10 68.2 102 38.2
MBI18_g01865_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000171 6.8e-10 68.2 53 60.4
Os04g0616300 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000171 8.8e-10 67.8 89 46.1
RcHm_v2.0_Chr5g0073701 Rosa chinensis HOM05D000054 ORTHO05D000286 8.8e-10 67.8 48 66.7
MELO3C026689.2 Cucumis melo HOM05D000054 ORTHO05D000286 1.2e-09 67.4 56 62.5
RcHm_v2.0_Chr5g0073781 Rosa chinensis HOM05D000054 ORTHO05D000286 1.2e-09 67.4 48 66.7
FvH4_1g21070 Fragaria vesca HOM05D000054 ORTHO05D000286 1.5e-09 67.0 51 70.6
FAN26G2319 Fragaria x ananassa HOM05D000054 ORTHO05D000286 1.5e-09 67.0 51 70.6
Gohir.A10G048300 Gossypium hirsutum HOM05D000054 ORTHO05D000286 1.5e-09 67.0 70 52.9
Glyma.08G120302 Glycine max HOM05D000054 ORTHO05D000171 2.0e-09 66.6 115 36.5
PSO675G6484 Papaver somniferum HOM05D000054 ORTHO05D000286 2.0e-09 66.6 51 66.7
Gohir.A09G076200 Gossypium hirsutum HOM05D000054 ORTHO05D000286 3.4e-09 65.9 90 44.4
Gohir.D09G076200 Gossypium hirsutum HOM05D000054 ORTHO05D000286 3.4e-09 65.9 90 44.4
BraA09t37635Z Brassica rapa HOM05D013967 ORTHO05D010247 4.4e-09 65.5 98 37.8
TWI38G2401 Tripterygium wilfordii HOM05D000054 ORTHO05D051487 5.7e-09 65.1 99 37.4
RcHm_v2.0_Chr2g0114821 Rosa chinensis HOM05D000054 ORTHO05D000286 7.5e-09 64.7 53 64.2
BcaC03g14910 Brassica carinata HOM05D000054 ORTHO05D010039 9.8e-09 64.3 58 50.0
BcaC03g16566 Brassica carinata HOM05D000054 ORTHO05D000286 9.8e-09 64.3 54 57.4
Thhalv10019658m.g Eutrema salsugineum HOM05D000054 ORTHO05D000286 9.8e-09 64.3 55 58.2
Rhsim06G0236300 Rhododendron simsii HOM05D000054 ORTHO05D000286 9.8e-09 64.3 46 73.9
C02p43800 Brassica napus HOM05D000054 ORTHO05D000286 1.7e-08 63.5 59 55.9
CARHR029070 Cardamine hirsuta HOM05D000054 ORTHO05D000171 1.7e-08 63.5 98 42.9
RcHm_v2.0_Chr5g0025891 Rosa chinensis HOM05D000054 ORTHO05D000286 2.2e-08 63.2 43 74.4
COL.COLO4_30909 Corchorus olitorius HOM05D000773 ORTHO05D000286 2.8e-08 62.8 89 46.1
DCAR_019924 Daucus carota HOM05D000054 ORTHO05D000171 2.8e-08 62.8 111 37.8
FvH4_3g40970 Fragaria vesca HOM05D000054 ORTHO05D000286 3.7e-08 62.4 53 60.4
BcaB04g20959 Brassica carinata HOM05D000054 ORTHO05D000171 4.9e-08 62.0 90 38.9
BcaC06g35460 Brassica carinata HOM05D000054 ORTHO05D000171 4.9e-08 62.0 102 38.2
C09p25650 Brassica napus HOM05D000054 ORTHO05D000286 4.9e-08 62.0 58 51.7
CSS0038481 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 4.9e-08 62.0 98 39.8
FAN11G0840 Fragaria x ananassa HOM05D000054 ORTHO05D000286 4.9e-08 62.0 46 71.7
Rhsim06G0241100 Rhododendron simsii HOM05D000054 ORTHO05D000286 4.9e-08 62.0 40 87.5
FAN21G3696 Fragaria x ananassa HOM05D000054 ORTHO05D000286 6.3e-08 61.6 53 60.4
CANSAT80G0992 Cannabis sativa HOM05D000054 ORTHO05D000286 8.3e-08 61.2 57 57.9
AUR62016382 Chenopodium quinoa HOM05D000054 ORTHO05D000171 8.3e-08 61.2 84 35.7
TAR624G0357 Trochodendron aralioides HOM05D000054 ORTHO05D000171 8.3e-08 61.2 115 38.3
Thecc.07G163600 Theobroma cacao HOM05D000054 ORTHO05D000171 1.1e-07 60.8 45 71.1
TAR626G1233 Trochodendron aralioides HOM05D000054 ORTHO05D000286 1.1e-07 60.8 52 65.4
FvH4_3g15410 Fragaria vesca HOM05D000054 ORTHO05D000171 1.4e-07 60.5 45 68.9
FvH4_3g15440 Fragaria vesca HOM05D000054 ORTHO05D000286 1.4e-07 60.5 45 68.9
FAN16G3517 Fragaria x ananassa HOM05D000054 ORTHO05D000286 1.4e-07 60.5 46 67.4
HPP92_005932 Vanilla planifolia HOM05D000054 ORTHO05D000286 1.4e-07 60.5 54 53.7
C02p23880 Brassica napus HOM05D000054 ORTHO05D000286 1.8e-07 60.1 49 55.1
Duzib187G0821 Durio zibethinus HOM05D000054 ORTHO05D000171 1.8e-07 60.1 47 66.0
FAN21G2765 Fragaria x ananassa HOM05D000054 ORTHO05D000286 1.8e-07 60.1 45 68.9
Gorai.001G131900 Gossypium raimondii HOM05D000054 ORTHO05D000286 1.8e-07 60.1 51 60.8
HPP92_005934 Vanilla planifolia HOM05D000054 ORTHO05D000171 1.8e-07 60.1 54 51.9
Ca_14421_v3 Cicer arietinum L. HOM05D013967 ORTHO05D010247 2.4e-07 59.7 74 50.0
Ca_30389_v3 Cicer arietinum L. HOM05D013967 ORTHO05D010247 2.4e-07 59.7 74 50.0
Hma1.2p1_0151F.1_g067490 Hydrangea macrophylla HOM05D000054 ORTHO05D010039 2.4e-07 59.7 46 67.4
MD15G1239300 Malus domestica HOM05D000054 ORTHO05D010247 2.4e-07 59.7 145 33.8
Rhsim02G0089100 Rhododendron simsii HOM05D000054 ORTHO05D000171 2.4e-07 59.7 85 38.8
Sabra11G0060300 Salix brachista HOM05D000054 ORTHO05D010247 2.4e-07 59.7 97 37.1
MD05G1295000 Malus domestica HOM05D000054 ORTHO05D002584 3.1e-07 59.3 100 38.0
RcHm_v2.0_Chr2g0124231 Rosa chinensis HOM05D000054 ORTHO05D000286 3.1e-07 59.3 52 61.5
BraA08t32065Z Brassica rapa HOM05D000054 ORTHO05D000286 4.1e-07 58.9 42 61.9
DCAR_005176 Daucus carota HOM05D000054 ORTHO05D000171 4.1e-07 58.9 98 35.7
MD03G1247100 Malus domestica HOM05D000054 ORTHO05D000171 4.1e-07 58.9 120 35.0
Hma1.2p1_2310F.1_g319540 Hydrangea macrophylla HOM05D000054 ORTHO05D010247 5.4e-07 58.5 110 34.5
QL04p077484 Quercus lobata HOM05D000054 ORTHO05D000286 5.4e-07 58.5 79 50.6
Eucgr.K01777 Eucalyptus grandis HOM05D000054 ORTHO05D000171 7.0e-07 58.2 92 39.1
GSVIVG01020735001 Vitis vinifera HOM05D000021 ORTHO05D440116 7.0e-07 58.2 109 33.9
MELO3C009538.2 Cucumis melo HOM05D000517 ORTHO05D003374 9.2e-07 57.8 92 38.0
Lsat_1_v5_gn_7_111781 Lactuca sativa HOM05D000054 ORTHO05D000286 9.2e-07 57.8 44 65.9
Lj5C9T12 Lonicera japonica HOM05D000053 ORTHO05D000035 1.2e-06 57.4 105 35.2
Nitab4.5_0002633g0050 Nicotiana tabacum HOM05D000054 ORTHO05D000286 1.2e-06 57.4 46 65.2
Sabra11G0056800 Salix brachista HOM05D000054 ORTHO05D005077 1.2e-06 57.4 105 34.3
Gorai.007G330000 Gossypium raimondii HOM05D000054 ORTHO05D000127 1.6e-06 57.0 102 33.3
Sp1g41780 Schrenkiella parvula HOM05D000054 ORTHO05D000286 2.0e-06 56.6 35 71.4
Sabra11G0060200 Salix brachista HOM05D000054 ORTHO05D000171 2.7e-06 56.2 76 39.5
Sabra11G0094000 Salix brachista HOM05D026604 ORTHO05D010247 2.7e-06 56.2 69 42.0
Sabra11G0094600 Salix brachista HOM05D026604 ORTHO05D010247 2.7e-06 56.2 69 42.0
CSS0019456 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 3.5e-06 55.8 91 44.0
Duzib160G0729 Durio zibethinus HOM05D000054 ORTHO05D000286 3.5e-06 55.8 51 60.8
Duzib268G1389 Durio zibethinus HOM05D000054 ORTHO05D000171 3.5e-06 55.8 84 38.1
Nitab4.5_0013354g0010 Nicotiana tabacum HOM05D000054 ORTHO05D000171 3.5e-06 55.8 115 37.4
Os08g0202300 Oryza sativa ssp. japonica HOM05D013967 ORTHO05D010247 3.5e-06 55.8 82 41.5
RhsimUnG0239700 Rhododendron simsii HOM05D013967 ORTHO05D010247 3.5e-06 55.8 42 71.4
COL.COLO4_38354 Corchorus olitorius HOM05D000054 ORTHO05D000286 4.5e-06 55.5 47 63.8
Haze_16592 Corylus avellana HOM05D000311 ORTHO05D000183 4.5e-06 55.5 95 37.9
Duzib235G0871 Durio zibethinus HOM05D000054 ORTHO05D000286 4.5e-06 55.5 52 57.7
Lj5C587T0 Lonicera japonica HOM05D000053 ORTHO05D000035 4.5e-06 55.5 111 35.1
Sed0000475 Sechium edule HOM05D000517 ORTHO05D003374 4.5e-06 55.5 91 38.5
CSS0032317 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D010247 5.9e-06 55.1 98 35.7
Duzib268G0777 Durio zibethinus HOM05D000054 ORTHO05D000171 5.9e-06 55.1 84 39.3
FAN16G1129 Fragaria x ananassa HOM05D000054 ORTHO05D000171 5.9e-06 55.1 61 50.8
HanXRQChr11g0335781 Helianthus annuus HOM05D000054 ORTHO05D000286 5.9e-06 55.1 51 56.9
Potri.004G063500 Populus trichocarpa HOM05D000054 ORTHO05D000171 5.9e-06 55.1 87 37.9
Prupe.6G126100 Prunus persica HOM05D000054 ORTHO05D000171 5.9e-06 55.1 87 35.6
FvH4_3g17940 Fragaria vesca HOM05D000054 ORTHO05D000171 7.7e-06 54.7 59 50.8
FAN21G4054 Fragaria x ananassa HOM05D000054 ORTHO05D000171 7.7e-06 54.7 73 43.8
HanXRQChr09g0258651 Helianthus annuus HOM05D000054 ORTHO05D000171 7.7e-06 54.7 95 37.9
HanXRQChr11g0335111 Helianthus annuus HOM05D000054 ORTHO05D000286 7.7e-06 54.7 48 54.2


User provided reference genes

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