Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 0.0e+00 1459.9 737 100.0
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1227.6 777 79.9
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 0.0e+00 1223.4 868 74.3
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1178.7 776 77.1
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1178.7 776 77.1
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 0.0e+00 1163.7 744 77.6
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1157.9 777 75.0
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1132.9 775 73.7
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1129.8 777 74.0
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1129.0 775 73.5
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1125.5 777 73.9
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 0.0e+00 1120.9 793 72.4
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 0.0e+00 1120.9 773 73.6
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 0.0e+00 1116.3 773 73.6
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1114.8 772 73.7
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 0.0e+00 1114.0 778 73.9
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 0.0e+00 1113.2 775 72.8
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1112.1 783 72.8
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1101.3 778 72.2
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 0.0e+00 1098.6 778 71.5
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 0.0e+00 1090.9 772 71.9
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 0.0e+00 1085.1 777 70.7
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 0.0e+00 1083.6 781 70.3
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 0.0e+00 1082.8 771 71.3
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 0.0e+00 1075.8 777 70.5
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 1.0e-311 1072.8 774 70.2
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 1.0e-311 1072.8 774 69.9
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 7.6e-311 1070.1 780 69.5
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 3.8e-310 1067.8 777 69.8
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 9.4e-309 1063.1 777 69.6
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 4.7e-308 1060.8 770 70.5
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 1.8e-307 1058.9 779 68.5
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 1.8e-307 1058.9 778 69.0
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 1.8e-307 1058.9 778 68.3
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 6.7e-307 1057.0 775 68.6
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 3.7e-305 1051.2 777 68.9
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 5.9e-303 1043.9 789 66.7
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 2.9e-302 1041.6 777 69.1
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 8.5e-302 1040.0 774 67.7
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 1.5e-301 1039.3 776 68.6
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 1.2e-300 1036.2 778 67.1
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 1.2e-300 1036.2 746 71.0
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 2.1e-300 1035.4 777 67.6
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 6.1e-300 1033.9 704 73.7
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 8.0e-300 1033.5 774 67.7
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 8.0e-300 1033.5 774 67.8
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 1.4e-299 1032.7 774 68.5
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 4.8e-297 1024.2 803 65.0
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.1e-296 1023.1 834 64.1
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 9.1e-296 1020.0 879 61.4
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 4.5e-295 1017.7 776 68.0
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 1.0e-294 1016.5 768 66.7
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.3e-294 1016.1 773 67.7
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 6.5e-294 1013.8 775 65.7
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 1.9e-293 1012.3 771 65.1
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 4.2e-293 1011.1 772 65.5
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 5.5e-293 1010.7 775 67.1
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 7.2e-293 1010.4 779 67.1
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 7.2e-293 1010.4 778 66.7
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 2.7e-292 1008.4 778 66.1
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 1.8e-291 1005.7 768 65.2
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 4.0e-291 1004.6 779 64.7
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 1.2e-290 1003.0 774 64.7
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 1.2e-290 1003.0 776 66.8
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 2.2e-289 998.8 780 66.9
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 8.3e-289 996.9 774 64.6
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 8.3e-289 996.9 770 64.5
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 3.1e-288 995.0 783 63.9
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 7.7e-287 990.3 774 65.5
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 3.3e-285 984.9 775 64.5
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 4.2e-285 984.6 774 65.1
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 3.6e-284 981.5 777 65.3
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 1.8e-283 979.2 879 60.2
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 9.8e-282 973.4 777 64.7
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 4.9e-281 971.1 693 72.2
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 8.3e-281 970.3 773 63.3
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 5.4e-280 967.6 800 62.1
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 5.4e-280 967.6 777 64.7
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 4.3e-277 958.0 774 66.1
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 5.2e-275 951.0 776 62.6
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 6.6e-270 934.1 783 61.9
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 1.6e-268 929.5 779 62.0
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 8.6e-262 907.1 745 61.9
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 1.5e-250 869.8 737 62.1
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 7.8e-247 857.4 783 58.2
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 1.8e-243 846.3 793 57.1
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 1.6e-207 726.9 499 71.5
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.1e-205 720.7 479 76.0
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 3.3e-205 719.2 533 70.2
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 6.3e-204 714.9 769 48.8
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 1.7e-201 706.8 734 53.1
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 4.7e-199 698.7 537 66.3
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.2e-188 663.3 426 75.1
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 1.7e-169 600.5 592 55.4
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 6.8e-158 562.0 790 41.0
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 8.0e-151 538.5 786 39.6
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 6.4e-148 528.9 485 58.8
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 2.4e-139 500.4 480 62.1
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.0e-137 493.4 396 65.4
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 5.6e-120 436.0 716 37.2
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 6.9e-110 402.5 443 52.4
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 1.6e-106 391.3 448 50.0
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 1.0e-100 372.1 821 31.1
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 2.4e-94 350.9 346 53.8
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 3.8e-92 343.6 380 50.5
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 6.5e-92 342.8 256 68.0
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.8e-89 334.7 190 78.4
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 1.9e-83 314.7 266 62.0
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 3.6e-74 283.9 229 61.6
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 6.3e-63 246.5 730 27.8
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.9e-61 240.0 151 77.5
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 4.4e-56 223.8 393 35.9
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 4.2e-51 207.2 184 64.7
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.2e-47 194.9 105 96.2
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 7.0e-46 189.9 225 46.2
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.7e-39 168.7 88 92.0
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 7.0e-38 163.3 458 27.5
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.7e-37 161.4 88 88.6
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 1.0e-36 159.5 104 67.3
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 1.3e-36 159.1 251 38.6
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.0e-36 157.1 88 87.5
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.1e-33 149.4 161 51.6
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.0e-32 145.2 83 84.3
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 5.8e-32 143.7 497 24.7
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 8.3e-31 139.8 508 25.2
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.1e-30 139.4 86 76.7
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 7.1e-30 136.7 109 57.8
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 1.0e-28 132.9 109 56.9
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.3e-28 132.5 92 67.4
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.7e-28 132.1 69 85.5
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 1.5e-27 129.0 90 71.1
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 9.5e-27 126.3 88 70.5
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 6.2e-26 123.6 61 91.8
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 6.2e-26 123.6 295 32.9
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 2.0e-24 118.6 319 31.0
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 7.6e-24 116.7 61 86.9
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 9.9e-24 116.3 61 80.3
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 8.4e-23 113.2 88 70.5
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 5.1e-20 104.0 71 71.8
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 8.6e-20 103.2 55 83.6
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.1e-19 102.8 61 78.7
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.5e-19 102.4 55 89.1
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 6.8e-17 93.6 78 55.1
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.5e-16 92.4 62 66.1
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 4.4e-16 90.9 82 56.1
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.9e-14 85.5 55 69.1
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.2e-14 84.7 55 69.1
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 7.1e-14 83.6 80 50.0
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.7e-13 81.6 88 54.5
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.5e-13 81.3 61 60.7
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 6.0e-13 80.5 60 63.3
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.0e-09 67.8 48 68.8
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 1.3e-07 62.8 31 90.3
SHI02115 Sapria himalayana HOM05D004656 ORTHO05D005404 3.8e-07 61.2 31 83.9
Eucgr.D02662 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.9e-07 60.8 82 50.0
CSS0022791 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 6.4e-07 60.5 56 53.6
Aqoxy3G02567 Aquilegia oxysepala HOM05D000526 ORTHO05D000956 1.9e-06 58.9 67 43.3
SMO244G0035 Selaginella moellendorffii HOM05D005151 ORTHO05D006322 5.4e-06 57.4 52 46.2


User provided reference genes

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