Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 2.9e-82 308.5 157 100.0
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 3.5e-72 275.0 173 85.0
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 5.6e-70 267.7 173 83.8
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.4e-57 226.5 173 72.3
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 2.3e-55 219.2 169 70.4
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 6.7e-55 217.6 168 69.6
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 1.9e-54 216.1 169 69.8
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 2.5e-54 215.7 173 68.2
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 4.3e-54 214.9 169 71.6
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 1.3e-53 213.4 169 64.5
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 1.6e-53 213.0 173 66.5
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 3.7e-53 211.8 169 65.7
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 1.4e-52 209.9 170 64.7
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 1.4e-52 209.9 170 65.3
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 3.1e-52 208.8 162 69.1
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 6.9e-52 207.6 162 68.5
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 6.9e-52 207.6 162 68.5
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 9.1e-52 207.2 167 68.3
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 2.6e-51 205.7 170 64.7
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 5.9e-51 204.5 164 65.2
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 5.9e-51 204.5 173 64.2
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 5.9e-51 204.5 171 64.3
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 5.9e-51 204.5 171 64.3
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 7.7e-51 204.1 170 62.9
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.7e-50 203.0 171 64.3
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.7e-50 203.0 170 66.5
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 3.8e-50 201.8 164 66.5
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 5.0e-50 201.4 172 64.5
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 5.0e-50 201.4 171 64.9
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.1e-49 200.3 168 65.5
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 1.9e-49 199.5 166 63.9
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 1.9e-49 199.5 170 63.5
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 2.5e-49 199.1 175 62.3
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 3.2e-49 198.7 159 67.3
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 3.2e-49 198.7 168 64.3
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 3.2e-49 198.7 163 66.3
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 4.2e-49 198.4 171 64.9
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 5.5e-49 198.0 171 63.2
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 7.2e-49 197.6 168 62.5
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 2.1e-48 196.1 169 65.1
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 2.7e-48 195.7 171 62.0
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 4.6e-48 194.9 168 60.1
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 6.1e-48 194.5 173 63.0
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.0e-47 193.7 166 65.1
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 1.4e-47 193.4 171 63.2
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 1.8e-47 193.0 166 60.8
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 2.3e-47 192.6 170 61.8
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 6.7e-47 191.0 165 62.4
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 6.7e-47 191.0 165 63.6
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 1.5e-46 189.9 165 60.6
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 2.6e-46 189.1 172 61.0
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 3.3e-46 188.7 171 60.8
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 4.4e-46 188.3 176 60.2
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 7.4e-46 187.6 168 59.5
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 9.7e-46 187.2 175 60.6
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 9.7e-46 187.2 139 72.7
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 1.3e-45 186.8 162 59.3
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 3.7e-45 185.3 157 60.5
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 3.7e-45 185.3 161 59.0
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 3.7e-45 185.3 140 66.4
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 3.7e-45 185.3 168 58.3
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 4.8e-45 184.9 168 58.3
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 4.8e-45 184.9 174 59.2
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.8e-44 183.0 172 58.1
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 2.4e-44 182.6 170 57.1
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 2.4e-44 182.6 154 60.4
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 2.4e-44 182.6 154 60.4
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 3.1e-44 182.2 150 62.7
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 4.1e-44 181.8 162 59.9
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 5.3e-44 181.4 169 58.0
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 5.3e-44 181.4 168 57.1
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 6.9e-44 181.0 163 59.5
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 6.9e-44 181.0 150 62.0
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 6.9e-44 181.0 163 59.5
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 6.9e-44 181.0 163 59.5
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 6.9e-44 181.0 171 57.9
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 1.5e-43 179.9 167 59.3
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.5e-43 179.9 167 59.3
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 3.4e-43 178.7 176 56.8
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 4.5e-43 178.3 167 58.7
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 1.7e-42 176.4 149 61.7
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 8.5e-42 174.1 155 58.1
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 1.1e-41 173.7 171 52.0
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 1.9e-41 172.9 213 48.8
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 2.5e-41 172.6 139 66.9
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 2.5e-41 172.6 154 60.4
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 5.5e-41 171.4 162 56.2
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 5.5e-41 171.4 162 56.2
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 9.4e-41 170.6 162 56.2
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 2.7e-40 169.1 154 64.3
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 3.6e-40 168.7 145 61.4
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 6.1e-40 167.9 151 60.9
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 7.9e-40 167.5 162 55.6
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 7.9e-40 167.5 109 79.8
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 1.0e-39 167.2 235 45.1
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 1.4e-39 166.8 159 56.0
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 3.9e-39 165.2 146 58.2
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 8.8e-39 164.1 143 64.3
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 1.1e-38 163.7 154 57.1
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 1.3e-37 160.2 145 60.0
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 2.4e-36 156.0 120 68.3
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 4.1e-36 155.2 155 56.8
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 4.5e-35 151.8 133 63.9
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 4.5e-35 151.8 116 64.7
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 1.3e-34 150.2 155 52.3
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 5.0e-34 148.3 90 81.1
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 8.5e-34 147.5 144 56.9
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.6e-32 143.3 87 79.3
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 1.6e-32 143.3 126 57.1
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 1.8e-31 139.8 126 55.6
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.8e-31 139.8 83 81.9
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 8.8e-31 137.5 134 60.4
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 4.4e-30 135.2 100 69.0
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 7.5e-30 134.4 125 58.4
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 2.4e-28 129.4 102 67.6
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 1.0e-23 114.0 124 46.8
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 2.0e-22 109.8 83 67.5
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 3.4e-22 109.0 129 51.9
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 7.5e-22 107.8 119 47.9
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 7.5e-22 107.8 63 82.5
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 2.2e-21 106.3 102 57.8
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 5.9e-19 98.2 54 87.0
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.4e-15 87.0 51 84.3
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 1.5e-14 83.6 53 73.6
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 2.0e-14 83.2 60 68.3
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.8e-13 79.3 53 73.6
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.1e-12 77.4 86 55.8
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 2.7e-11 72.8 101 42.6
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 7.3e-09 64.7 85 31.8
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 3.0e-07 59.3 84 46.4
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 3.0e-07 59.3 84 46.4


User provided reference genes

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