Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 2.4e-170 602.1 302 100.0
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 5.7e-87 325.1 303 58.1
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 5.0e-75 285.4 289 56.4
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 6.6e-75 285.0 247 61.1
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 1.9e-66 256.9 277 56.0
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 3.6e-65 252.7 290 50.0
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 1.4e-64 250.8 307 48.5
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 1.3e-62 244.2 298 48.7
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 3.2e-61 239.6 299 47.5
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 9.2e-61 238.0 300 46.0
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 1.2e-60 237.7 256 51.6
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 2.7e-60 236.5 294 46.3
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 3.0e-59 233.0 291 45.0
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 1.1e-58 231.1 293 46.1
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 2.5e-58 229.9 308 42.5
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.4e-56 224.2 268 46.3
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 1.8e-56 223.8 244 52.5
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 2.3e-56 223.4 283 43.8
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 3.1e-56 223.0 299 43.5
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 8.9e-56 221.5 268 45.9
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.2e-55 221.1 268 45.9
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 1.5e-55 220.7 282 46.5
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 7.6e-55 218.4 282 44.3
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 9.9e-55 218.0 296 44.6
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 9.9e-55 218.0 301 43.9
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 1.0e-51 208.0 279 46.2
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 1.7e-51 207.2 284 42.3
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 3.0e-51 206.5 294 42.2
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 1.9e-50 203.8 248 47.2
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 1.2e-49 201.1 285 41.4
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 1.2e-49 201.1 299 42.5
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 4.7e-49 199.1 315 40.0
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 4.7e-49 199.1 254 47.6
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 1.1e-48 198.0 272 44.1
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 5.2e-48 195.7 270 44.1
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 7.6e-47 191.8 273 42.1
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 7.6e-47 191.8 272 41.5
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 7.6e-47 191.8 295 40.7
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 7.6e-47 191.8 263 40.7
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 9.9e-47 191.4 291 43.0
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 8.4e-46 188.3 298 38.6
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 7.1e-45 185.3 290 38.6
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 1.6e-44 184.1 248 46.8
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 1.6e-44 184.1 295 41.7
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 2.7e-44 183.3 307 41.4
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 7.8e-44 181.8 287 38.7
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 1.3e-43 181.0 291 42.3
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 2.3e-43 180.3 291 39.9
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 3.0e-43 179.9 257 42.4
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 6.6e-43 178.7 201 48.8
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 6.6e-43 178.7 280 40.0
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 1.5e-42 177.6 290 37.9
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 1.3e-41 174.5 243 41.2
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 2.1e-41 173.7 299 39.1
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 6.2e-41 172.2 309 40.1
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 1.1e-40 171.4 309 40.1
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 1.8e-40 170.6 293 36.9
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 1.8e-40 170.6 264 38.3
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 2.9e-38 163.3 254 40.9
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 4.9e-38 162.5 210 44.8
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 1.9e-37 160.6 194 44.3
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 3.2e-37 159.8 292 37.7
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 7.1e-37 158.7 196 46.4
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 6.6e-35 152.1 229 44.5
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 7.4e-34 148.7 263 39.2
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 8.1e-33 145.2 256 36.3
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 1.4e-32 144.4 280 33.2
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 3.1e-32 143.3 278 36.0
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 6.9e-32 142.1 238 40.3
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 1.2e-31 141.4 273 36.3
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 2.0e-31 140.6 234 37.6
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 5.8e-31 139.0 233 36.1
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 5.8e-31 139.0 145 53.1
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 2.2e-30 137.1 250 34.4
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 2.9e-30 136.7 235 38.3
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 3.8e-30 136.3 274 37.6
Zm00001eb297100 Zea mays HOM05D002705 ORTHO05D009765 4.9e-30 136.0 267 34.1
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 1.9e-29 134.0 233 35.6
Zm00001eb344730 Zea mays HOM05D002705 ORTHO05D009765 1.9e-29 134.0 274 32.8
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 1.2e-28 131.3 254 31.9
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 2.1e-28 130.6 233 36.1
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 2.1e-28 130.6 233 36.1
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 2.3e-27 127.1 163 44.8
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 4.8e-25 119.4 199 38.7
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 4.0e-24 116.3 169 43.2
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 1.3e-19 101.3 261 28.4
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 2.3e-19 100.5 196 34.2
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 1.9e-18 97.4 333 28.5
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 9.6e-18 95.1 129 42.6
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 1.8e-16 90.9 184 37.5
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 5.3e-16 89.4 134 44.0
RcHm_v2.0_Chr2g0151581 Rosa chinensis HOM05D002705 ORTHO05D009765 2.7e-12 77.0 93 44.1
AUR62010322 Chenopodium quinoa HOM05D001524 ORTHO05D001392 1.7e-06 57.8 115 32.2
Ca_11067_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 1.7e-06 57.8 215 23.3
Peaxi162Scf00016g02428 Petunia axillaris HOM05D001524 ORTHO05D001392 1.7e-06 57.8 124 30.6
Ah.01g011010 Amaranthus hybridus HOM05D001524 ORTHO05D001392 2.2e-06 57.4 108 30.6
Glyma.16G214300 Glycine max HOM05D000005 ORTHO05D001392 2.2e-06 57.4 105 32.4
Rhsim11G0157300 Rhododendron simsii HOM05D001524 ORTHO05D001392 3.8e-06 56.6 105 33.3
Atru.chr5.2483 Acer truncatum HOM05D001524 ORTHO05D001392 5.0e-06 56.2 115 27.8
ECA240G3237 Erigeron canadensis HOM05D001524 ORTHO05D001392 5.0e-06 56.2 237 24.5
PSO675G2020 Papaver somniferum HOM05D001524 ORTHO05D001392 6.5e-06 55.8 117 28.2
Solyc01g080790.3 Solanum lycopersicum HOM05D001524 ORTHO05D001392 6.5e-06 55.8 241 24.5
Glyma.10G261200 Glycine max HOM05D001524 ORTHO05D001392 8.5e-06 55.5 230 20.9
Oeu018582.1 Olea europaea HOM05D001524 ORTHO05D001392 8.5e-06 55.5 124 29.0
PGR042G1781 Punica granatum HOM05D001524 ORTHO05D001392 8.5e-06 55.5 113 31.9


User provided reference genes

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