Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 1.0e-213 746.5 379 100.0
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 1.8e-183 646.0 379 84.4
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 8.8e-178 627.1 379 80.5
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 3.8e-173 611.7 371 82.5
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 4.3e-172 608.2 379 81.0
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 3.6e-171 605.1 376 79.5
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 3.6e-171 605.1 379 79.7
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 6.8e-170 600.9 376 77.9
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 8.9e-170 600.5 379 77.3
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 4.4e-169 598.2 379 77.0
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 1.7e-165 586.3 379 76.3
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 3.9e-165 585.1 429 70.2
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 7.3e-164 580.9 379 74.4
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 7.3e-164 580.9 379 74.7
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 9.5e-164 580.5 379 75.2
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 9.5e-164 580.5 375 74.1
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 2.1e-163 579.3 376 75.5
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 6.2e-163 577.8 377 75.6
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 1.1e-162 577.0 377 75.9
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 1.4e-162 576.6 375 75.5
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 2.3e-162 575.9 380 74.2
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 6.8e-162 574.3 378 73.8
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 8.9e-162 573.9 377 73.7
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 2.0e-161 572.8 376 76.1
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 2.0e-161 572.8 375 75.5
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 2.0e-161 572.8 379 73.9
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.2e-160 569.3 379 74.1
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 1.4e-159 566.6 375 74.4
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 2.7e-158 562.4 375 71.7
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 2.7e-158 562.4 379 72.3
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 7.8e-158 560.8 375 71.5
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 2.3e-157 559.3 377 74.3
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.0e-157 558.9 375 71.5
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 5.0e-157 558.1 375 71.2
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 6.6e-157 557.8 379 71.5
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 2.5e-156 555.8 377 72.4
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 7.3e-156 554.3 377 72.1
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 1.2e-155 553.5 375 72.3
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 1.2e-155 553.5 377 74.0
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 6.2e-155 551.2 377 71.9
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 1.4e-154 550.1 376 71.5
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.7e-152 543.1 385 68.3
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 1.2e-150 537.0 380 69.5
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 7.8e-150 534.3 377 69.0
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 7.8e-150 534.3 380 68.7
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 1.3e-149 533.5 377 69.5
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 3.0e-149 532.3 380 67.9
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 3.9e-149 531.9 377 69.0
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 5.1e-149 531.6 377 68.7
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 1.5e-148 530.0 378 68.5
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 1.9e-148 529.6 375 69.3
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 7.3e-148 527.7 379 66.5
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 3.6e-147 525.4 380 67.6
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 6.2e-147 524.6 379 66.2
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 1.4e-146 523.5 377 67.9
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 1.4e-146 523.5 376 68.4
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.2e-145 520.4 376 69.4
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 7.6e-145 517.7 379 67.5
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 3.8e-144 515.4 378 66.7
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 2.4e-143 512.7 381 67.2
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 4.1e-143 511.9 406 63.3
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 5.4e-143 511.5 380 65.8
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 5.4e-143 511.5 378 66.7
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 2.1e-142 509.6 377 65.5
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 4.6e-142 508.4 380 65.5
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 2.3e-141 506.1 382 64.4
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 3.0e-141 505.8 379 64.1
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 3.0e-141 505.8 377 66.3
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 2.5e-140 502.7 379 63.9
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 3.3e-140 502.3 381 64.0
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 7.3e-140 501.1 381 63.3
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 7.3e-140 501.1 365 68.8
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 7.3e-140 501.1 379 62.5
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 1.6e-139 500.0 377 63.4
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 2.1e-139 499.6 379 63.9
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 2.1e-139 499.6 379 63.1
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 2.8e-139 499.2 381 63.3
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 3.6e-139 498.8 381 63.8
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 8.1e-139 497.7 381 63.0
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 8.1e-139 497.7 381 63.0
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 1.1e-138 497.3 381 63.0
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 7.1e-135 484.6 379 61.5
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 9.3e-135 484.2 379 64.4
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 5.1e-133 478.4 400 60.8
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 6.6e-133 478.0 375 63.7
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 6.6e-133 478.0 424 57.8
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 1.3e-131 473.8 379 62.5
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 2.4e-130 469.5 377 63.7
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 4.2e-127 458.8 316 71.5
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 8.7e-125 451.1 375 59.7
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 9.6e-124 447.6 386 59.8
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 4.2e-119 432.2 371 56.1
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 6.5e-112 408.3 267 74.5
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 5.3e-106 388.7 377 49.9
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 6.9e-106 388.3 368 53.8
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 5.9e-105 385.2 272 68.8
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 3.2e-95 352.8 409 49.6
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 3.0e-93 346.3 276 63.4
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 5.7e-84 315.5 191 79.1
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 1.8e-82 310.5 374 42.8
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.0e-80 304.7 269 60.2
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 4.0e-69 266.2 368 38.0
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 9.2e-50 201.8 166 60.8
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 9.2e-50 201.8 135 75.6
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 1.6e-49 201.1 223 48.4
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 1.6e-49 201.1 223 48.4
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 8.0e-46 188.7 169 53.8
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 5.2e-45 186.0 140 62.9
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 3.7e-43 179.9 124 66.1
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 2.1e-41 174.1 124 68.5
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 6.0e-41 172.6 112 66.1
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 4.4e-36 156.4 379 33.5
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 7.5e-36 155.6 379 31.9
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 4.6e-33 146.4 82 95.1
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 7.8e-33 145.6 117 59.0
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 2.0e-28 131.0 110 65.5
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 5.6e-23 112.8 102 67.6
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 1.8e-21 107.8 360 26.4
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 3.3e-15 87.0 73 65.8
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 4.3e-15 86.7 51 84.3
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 2.8e-14 84.0 54 79.6
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 1.8e-13 81.3 71 59.2
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 2.0e-12 77.8 51 70.6
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 7.6e-12 75.9 114 44.7
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 7.1e-10 69.3 65 56.9
COL.COLO4_29892 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.1e-09 67.8 53 64.2
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 6.0e-09 66.2 94 42.6
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 3.0e-08 63.9 45 68.9
CAN.G730.13 Capsicum annuum HOM05D005972 ORTHO05D007548 3.3e-07 60.5 37 75.7
SMO364G0058 Selaginella moellendorffii HOM05D000177 ORTHO05D002987 3.3e-07 60.5 130 35.4
CDE08G1644 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 5.6e-07 59.7 45 62.2
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 7.4e-07 59.3 83 45.8
Migut.F00246 Erythranthe guttata HOM05D002314 ORTHO05D002538 1.3e-06 58.5 389 24.9
HPP92_001618 Vanilla planifolia HOM05D000076 ORTHO05D002916 1.3e-06 58.5 130 28.5
unitig_61.g26315 Utricularia gibba HOM05D000406 ORTHO05D008572 1.6e-06 58.2 185 28.1
TAR375G0890 Trochodendron aralioides HOM05D005972 ORTHO05D007548 2.1e-06 57.8 37 73.0
Oeu024067.1 Olea europaea HOM05D001142 ORTHO05D004628 2.8e-06 57.4 355 22.3
A07p45510 Brassica napus HOM05D001142 ORTHO05D004628 3.7e-06 57.0 299 24.4
C06p54340 Brassica napus HOM05D001142 ORTHO05D004628 3.7e-06 57.0 299 24.4
BolC6t40445H Brassica oleracea HOM05D001142 ORTHO05D004628 3.7e-06 57.0 299 24.4
BraA07t32053Z Brassica rapa HOM05D001142 ORTHO05D004628 3.7e-06 57.0 299 24.4
CBR_g48166 Chara braunii HOM05D000177 ORTHO05D003047 8.1e-06 55.8 133 32.3
Gohir.A10G096600 Gossypium hirsutum HOM05D001367 ORTHO05D005289 8.1e-06 55.8 333 24.3


User provided reference genes

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