Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.4e-87 325.5 165 100.0
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.2e-78 296.6 149 99.3
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 1.0e-58 230.3 149 78.5
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 2.3e-58 229.2 149 77.9
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.3e-56 223.4 149 76.5
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 3.7e-56 221.9 149 75.2
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 4.1e-55 218.4 149 73.2
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 2.0e-54 216.1 149 74.5
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 6.0e-54 214.5 151 71.5
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 1.3e-53 213.4 146 72.6
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.3e-53 212.6 149 72.5
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 2.3e-53 212.6 150 68.7
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.3e-53 212.6 146 73.3
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 3.9e-53 211.8 149 71.8
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 3.9e-53 211.8 148 70.9
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 5.0e-53 211.5 151 69.5
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 1.1e-52 210.3 141 75.9
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 1.1e-52 210.3 149 71.8
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 1.9e-52 209.5 141 76.6
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.9e-52 209.5 140 75.0
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 4.3e-52 208.4 139 74.8
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 7.3e-52 207.6 140 72.9
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 1.2e-51 206.8 147 73.5
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 1.6e-51 206.5 145 74.5
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 4.7e-51 204.9 151 69.5
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 1.8e-50 203.0 151 70.9
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 6.8e-50 201.1 141 73.0
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.5e-49 199.9 150 70.7
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 1.5e-49 199.9 150 69.3
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 6.4e-48 194.5 140 72.1
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 8.3e-48 194.1 154 66.2
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 1.4e-47 193.4 139 71.9
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 2.4e-47 192.6 149 67.8
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.2e-47 192.2 146 68.5
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 4.1e-47 191.8 150 68.0
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 5.4e-47 191.4 140 69.3
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.4e-47 191.4 139 68.3
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 5.4e-47 191.4 149 65.1
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 9.2e-47 190.7 139 67.6
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 1.6e-46 189.9 138 69.6
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 2.1e-46 189.5 140 66.4
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 2.1e-46 189.5 152 66.4
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 3.5e-46 188.7 142 69.7
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 3.5e-46 188.7 154 64.9
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 4.6e-46 188.3 139 67.6
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 4.6e-46 188.3 139 67.6
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 6.0e-46 188.0 147 68.0
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.0e-45 187.2 149 62.4
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 1.3e-45 186.8 138 68.1
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 6.6e-45 184.5 138 65.9
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 8.6e-45 184.1 135 66.7
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 8.6e-45 184.1 149 63.1
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 1.1e-44 183.7 151 62.3
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.1e-44 183.7 146 64.4
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 1.5e-44 183.3 140 65.7
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 2.5e-44 182.6 148 64.9
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.5e-44 182.6 127 73.2
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 5.6e-44 181.4 138 66.7
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 7.3e-44 181.0 139 69.1
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 7.3e-44 181.0 151 62.3
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 9.5e-44 180.6 149 59.1
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.2e-43 180.3 152 61.8
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 1.2e-43 180.3 148 62.2
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 1.6e-43 179.9 142 66.9
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 1.6e-43 179.9 152 61.8
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 1.6e-43 179.9 141 63.1
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.6e-43 179.9 136 66.2
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 2.1e-43 179.5 136 64.7
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 2.8e-43 179.1 153 61.4
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 2.8e-43 179.1 145 66.2
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 3.6e-43 178.7 156 60.3
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 3.6e-43 178.7 150 62.7
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 6.2e-43 177.9 136 64.0
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 6.2e-43 177.9 150 64.7
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 8.1e-43 177.6 140 64.3
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 8.1e-43 177.6 137 67.2
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 1.4e-42 176.8 136 64.0
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.4e-42 176.8 152 61.8
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.4e-42 176.8 137 65.7
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.4e-42 176.8 151 60.3
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.8e-42 176.4 152 61.2
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 1.8e-42 176.4 155 59.4
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.8e-42 176.4 152 61.2
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.8e-42 176.4 152 61.2
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.8e-42 176.4 152 61.2
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 1.8e-42 176.4 155 59.4
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 2.3e-42 176.0 152 60.5
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 2.3e-42 176.0 152 60.5
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 2.3e-42 176.0 152 60.5
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 2.3e-42 176.0 155 59.4
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.3e-42 176.0 138 67.4
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 4.0e-42 175.3 139 64.7
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 5.2e-42 174.9 136 64.0
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 8.9e-42 174.1 137 65.7
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 8.9e-42 174.1 132 65.9
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.2e-41 173.7 138 65.9
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.2e-41 173.7 153 61.4
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 2.6e-41 172.6 137 65.0
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 3.4e-41 172.2 119 68.1
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 4.4e-41 171.8 139 65.5
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 4.4e-41 171.8 137 65.7
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 5.8e-41 171.4 154 59.7
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 7.6e-41 171.0 140 62.1
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 9.9e-41 170.6 140 62.1
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 9.9e-41 170.6 140 62.1
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.2e-40 169.5 143 62.2
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 2.2e-40 169.5 139 60.4
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 2.9e-40 169.1 137 63.5
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 3.2e-39 165.6 143 61.5
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.4e-39 164.9 141 61.0
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 1.2e-38 163.7 147 59.2
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.1e-36 157.1 86 84.9
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 3.3e-36 155.6 86 83.7
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 3.6e-35 152.1 96 78.1
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.2e-32 142.9 77 87.0
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 3.8e-32 142.1 139 52.5
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.4e-31 140.2 77 85.7
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 1.4e-31 140.2 141 55.3
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 4.2e-31 138.7 77 83.1
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 7.8e-30 134.4 77 79.2
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 2.3e-29 132.9 162 46.3
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 3.3e-28 129.0 81 72.8
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 3.9e-21 105.5 59 86.4
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 5.1e-21 105.1 75 70.7
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 5.6e-20 101.7 115 49.6
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 2.1e-19 99.8 75 60.0
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.6e-19 99.0 76 57.9
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 4.0e-18 95.5 74 60.8
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 9.0e-18 94.4 50 90.0
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 6.0e-14 81.6 76 47.4
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 3.9e-13 79.0 61 62.3
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 3.9e-13 79.0 61 62.3
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 8.1e-11 71.2 62 59.7


User provided reference genes

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