Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 9.6e-48 193.4 111 100.0
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 6.5e-20 100.9 88 59.1
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.9e-19 99.4 91 54.9
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.2e-18 96.7 91 54.9
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 2.1e-18 95.9 93 60.2
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 6.0e-18 94.4 92 56.5
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 7.9e-18 94.0 82 61.0
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.0e-17 93.6 98 55.1
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 1.4e-14 83.2 58 63.8
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.4e-14 83.2 58 63.8
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.4e-14 83.2 58 63.8
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.3e-14 81.3 58 62.1
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 9.0e-14 80.5 58 62.1
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 9.0e-14 80.5 58 62.1
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 1.5e-13 79.7 75 52.0
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 2.9e-12 75.5 75 49.3
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 6.5e-12 74.3 98 44.9
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 6.5e-12 74.3 54 61.1
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 8.5e-12 73.9 83 48.2
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 1.1e-11 73.6 91 45.1
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 2.5e-11 72.4 84 47.6
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 4.2e-11 71.6 77 45.5
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 5.5e-11 71.2 92 42.4
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 7.2e-11 70.9 83 44.6
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.6e-10 69.7 86 44.2
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 1.6e-10 69.7 90 43.3
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 1.6e-10 69.7 94 44.7
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 2.7e-10 68.9 90 44.4
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 3.6e-10 68.6 45 66.7
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 4.6e-10 68.2 65 53.8
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 6.1e-10 67.8 80 48.8
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 7.9e-10 67.4 82 39.0
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 1.0e-09 67.0 94 40.4
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 1.8e-09 66.2 90 40.0
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 2.3e-09 65.9 72 44.4
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 2.3e-09 65.9 90 41.1
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 2.3e-09 65.9 68 47.1
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.9e-09 65.1 70 50.0
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 5.1e-09 64.7 54 55.6
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 5.1e-09 64.7 54 55.6
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 8.8e-09 63.9 75 42.7
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 1.1e-08 63.5 55 52.7
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.1e-08 63.5 55 52.7
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 1.5e-08 63.2 44 56.8
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.9e-08 62.8 61 47.5
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 1.9e-08 62.8 78 43.6
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 2.5e-08 62.4 73 45.2
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 2.5e-08 62.4 36 66.7
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 3.3e-08 62.0 61 47.5
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 3.3e-08 62.0 80 41.2
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 3.3e-08 62.0 87 39.1
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 4.3e-08 61.6 73 42.5
PGSC0003DMG400000096 Solanum tuberosum HOM05D007041 ORTHO05D008036 4.3e-08 61.6 88 43.2
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 5.7e-08 61.2 80 40.0
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 7.4e-08 60.8 61 55.7
SGA_v2.0_scaffold11G05722 Striga asiatica HOM05D007041 ORTHO05D008036 7.4e-08 60.8 78 39.7
RcHm_v2.0_Chr7g0195411 Rosa chinensis HOM05D017100 ORTHO05D008036 9.7e-08 60.5 53 52.8
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 9.7e-08 60.5 89 36.0
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 1.7e-07 59.7 44 54.5
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 1.7e-07 59.7 44 50.0
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 1.7e-07 59.7 67 41.8
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.7e-07 59.7 66 47.0
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 2.2e-07 59.3 65 46.2
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 2.8e-07 58.9 42 57.1
Migut.B01841 Erythranthe guttata HOM05D007041 ORTHO05D008036 3.7e-07 58.5 40 52.5
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 3.7e-07 58.5 80 40.0
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 3.7e-07 58.5 80 40.0
Lj1g0010364 Lotus japonicus HOM05D007041 ORTHO05D008036 3.7e-07 58.5 67 38.8
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 4.8e-07 58.2 84 39.3
Sabra01G0069900 Salix brachista HOM05D007041 ORTHO05D008036 4.8e-07 58.2 39 64.1
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 6.3e-07 57.8 48 41.7
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 6.3e-07 57.8 48 41.7
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 6.3e-07 57.8 92 33.7
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 6.3e-07 57.8 65 49.2
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 8.2e-07 57.4 36 58.3
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 8.2e-07 57.4 59 52.5
FAN18G0435 Fragaria x ananassa HOM05D017100 ORTHO05D008036 8.2e-07 57.4 33 66.7
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 8.2e-07 57.4 62 43.5
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 8.2e-07 57.4 66 43.9
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 8.2e-07 57.4 55 43.6
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 1.1e-06 57.0 43 51.2
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 1.1e-06 57.0 43 51.2
FAN13G1599 Fragaria x ananassa HOM05D017100 ORTHO05D008036 1.1e-06 57.0 39 59.0
FAN18G2618 Fragaria x ananassa HOM05D017100 ORTHO05D008036 1.1e-06 57.0 39 59.0
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.1e-06 57.0 72 40.3
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 1.1e-06 57.0 86 37.2
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 1.4e-06 56.6 36 58.3
Zm00001eb310140 Zea mays HOM05D007041 ORTHO05D008036 1.4e-06 56.6 42 54.8
Zm00001eb441140 Zea mays HOM05D007041 ORTHO05D008036 1.4e-06 56.6 42 54.8
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 1.8e-06 56.2 39 56.4
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 2.4e-06 55.8 63 44.4
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 2.4e-06 55.8 63 44.4
FvH4_5g04090 Fragaria vesca HOM05D017100 ORTHO05D008036 2.4e-06 55.8 53 49.1
arahy.Tifrunner.gnm1.ann1.3XXF02 Arachis hypogaea HOM05D007041 ORTHO05D008036 3.1e-06 55.5 40 55.0
FAN08G3467 Fragaria x ananassa HOM05D017100 ORTHO05D008036 3.1e-06 55.5 30 70.0
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 3.1e-06 55.5 42 54.8
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 3.1e-06 55.5 75 37.3
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 3.1e-06 55.5 33 60.6
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 3.1e-06 55.5 34 61.8
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 4.1e-06 55.1 57 45.6
MSTRG.13877 Avicennia marina HOM05D007041 ORTHO05D008036 4.1e-06 55.1 40 62.5
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 5.3e-06 54.7 59 45.8
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 5.3e-06 54.7 48 52.1
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 6.9e-06 54.3 61 45.9
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 6.9e-06 54.3 55 41.8
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 9.1e-06 53.9 60 46.7
Manes.01G248300 Manihot esculenta HOM05D007041 ORTHO05D008036 9.1e-06 53.9 88 44.3
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 9.1e-06 53.9 76 36.8


User provided reference genes

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