Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 9.5e-41 169.9 93 100.0
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 1.0e-26 123.2 91 72.5
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.9e-25 119.0 93 66.7
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 3.3e-25 118.2 88 68.2
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 1.1e-23 113.2 88 69.3
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 2.3e-23 112.1 88 60.2
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 3.1e-23 111.7 98 63.3
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 3.1e-23 111.7 98 63.3
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.5e-22 109.4 92 58.7
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 9.9e-22 106.7 89 65.2
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 9.9e-22 106.7 97 62.9
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 9.9e-22 106.7 85 65.9
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.3e-21 106.3 89 65.2
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 1.7e-21 105.9 90 64.4
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 3.7e-21 104.8 99 63.6
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 4.9e-21 104.4 91 62.6
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 8.4e-21 103.6 89 65.2
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 8.4e-21 103.6 65 76.9
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 8.4e-21 103.6 94 58.5
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.1e-20 103.2 89 62.9
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.9e-20 102.4 103 58.3
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 2.4e-20 102.1 94 59.6
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 4.1e-20 101.3 96 57.3
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 7.1e-20 100.5 97 59.8
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 9.2e-20 100.1 95 54.7
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 1.2e-19 99.8 94 57.4
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 1.6e-19 99.4 88 63.6
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 2.1e-19 99.0 87 60.9
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 2.7e-19 98.6 89 56.2
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 3.5e-19 98.2 94 55.3
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 6.0e-19 97.4 86 70.9
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 7.8e-19 97.1 88 54.5
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 7.8e-19 97.1 89 53.9
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 1.0e-18 96.7 90 61.1
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 3.9e-18 94.7 97 60.8
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 8.6e-18 93.6 104 54.8
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 3.3e-17 91.7 89 53.9
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 5.6e-17 90.9 88 58.0
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 5.6e-17 90.9 104 53.8
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 5.6e-17 90.9 88 54.5
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 7.3e-17 90.5 99 62.6
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 7.3e-17 90.5 90 56.7
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 9.6e-17 90.1 88 59.1
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 9.6e-17 90.1 95 54.7
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.6e-16 89.4 106 56.6
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 6.2e-16 87.4 95 56.8
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 6.2e-16 87.4 95 56.8
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 1.1e-15 86.7 97 55.7
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 1.8e-15 85.9 85 55.3
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 3.1e-15 85.1 67 71.6
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 3.1e-15 85.1 96 51.0
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 8.9e-15 83.6 99 58.6
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 2.0e-14 82.4 91 51.6
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 4.4e-14 81.3 98 53.1
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 7.6e-14 80.5 91 50.5
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 2.2e-13 79.0 98 54.1
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 2.9e-13 78.6 85 51.8
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 3.8e-13 78.2 85 56.5
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 4.9e-13 77.8 47 78.7
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 6.4e-13 77.4 98 52.0
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 6.4e-13 77.4 97 51.5
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.1e-12 76.6 77 55.8
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 1.9e-12 75.9 96 52.1
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 1.9e-12 75.9 88 50.0
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 2.4e-12 75.5 89 49.4
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 3.2e-12 75.1 98 53.1
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 7.1e-12 73.9 98 52.0
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 2.1e-11 72.4 49 71.4
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 2.7e-11 72.0 59 66.1
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 2.7e-11 72.0 59 66.1
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 2.7e-11 72.0 59 66.1
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 3.5e-11 71.6 97 53.6
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 4.6e-11 71.2 97 45.4
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 4.6e-11 71.2 85 47.1
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 1.7e-10 69.3 93 45.2
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 3.0e-10 68.6 58 53.4
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 3.9e-10 68.2 93 44.1
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 3.9e-10 68.2 93 44.1
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 3.9e-10 68.2 51 64.7
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 5.1e-10 67.8 98 46.9
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 5.1e-10 67.8 49 69.4
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 1.5e-09 66.2 93 44.1
BcaB01g03759 Brassica carinata HOM05D009505 ORTHO05D007552 1.9e-09 65.9 93 44.1
C04p10180 Brassica napus HOM05D009505 ORTHO05D007552 1.9e-09 65.9 91 42.9
BraA05t19787Z Brassica rapa HOM05D009505 ORTHO05D007552 2.5e-09 65.5 91 42.9
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 2.5e-09 65.5 101 44.6
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 7.3e-09 63.9 91 45.1
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 9.6e-09 63.5 55 58.2
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 9.6e-09 63.5 87 47.1
MBI14_g13884_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 1.3e-08 63.2 64 54.7
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 1.3e-08 63.2 56 62.5
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 1.6e-08 62.8 93 43.0
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 2.1e-08 62.4 93 40.9
A04p28920 Brassica napus HOM05D009505 ORTHO05D007552 2.1e-08 62.4 93 47.3
BraA04t18368Z Brassica rapa HOM05D009505 ORTHO05D007552 2.1e-08 62.4 93 47.3
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 2.8e-08 62.0 93 41.9
A05p08210 Brassica napus HOM05D009505 ORTHO05D007552 2.8e-08 62.0 91 48.4
CARHR131780 Cardamine hirsuta HOM05D009505 ORTHO05D007552 3.6e-08 61.6 93 43.0
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 3.6e-08 61.6 91 41.8
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 4.8e-08 61.2 88 45.5
Lsat_1_v5_gn_6_117001 Lactuca sativa HOM05D007574 ORTHO05D007552 4.8e-08 61.2 58 62.1
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 4.8e-08 61.2 97 39.2
BcaB02g09253 Brassica carinata HOM05D009505 ORTHO05D007552 6.2e-08 60.8 91 39.6
BcaB02g09254 Brassica carinata HOM05D009505 ORTHO05D007552 6.2e-08 60.8 91 39.6
THA.LOC104824525 Tarenaya hassleriana HOM05D009505 ORTHO05D007552 6.2e-08 60.8 91 40.7
Ciclev10027461m.g Citrus clementina HOM05D007574 ORTHO05D007552 1.1e-07 60.1 46 56.5
BolC9t60174H Brassica oleracea HOM05D000031 ORTHO05D001864 1.4e-07 59.7 62 54.8
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 1.4e-07 59.7 86 44.2
Ah.01g023650 Amaranthus hybridus HOM05D007574 ORTHO05D007552 3.1e-07 58.5 64 54.7
BcaNung04449 Brassica carinata HOM05D009057 ORTHO05D011698 3.1e-07 58.5 62 54.8
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 3.1e-07 58.5 88 46.6
AL6G11310 Arabidopsis lyrata HOM05D009057 ORTHO05D011698 4.0e-07 58.2 62 54.8
BcaC01g05595 Brassica carinata HOM05D009505 ORTHO05D007552 4.0e-07 58.2 93 45.2
BcaC01g05596 Brassica carinata HOM05D009505 ORTHO05D007552 4.0e-07 58.2 93 45.2
C03p24490 Brassica napus HOM05D009505 ORTHO05D007552 4.0e-07 58.2 93 45.2
BolC3t14847H Brassica oleracea HOM05D009505 ORTHO05D007552 4.0e-07 58.2 93 45.2
BraA10t45380Z Brassica rapa HOM05D009057 ORTHO05D011698 4.0e-07 58.2 62 53.2
AT5G02090 Arabidopsis thaliana HOM05D009057 ORTHO05D011698 5.3e-07 57.8 62 53.2
Os01g0143900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 5.3e-07 57.8 64 48.4
AL4G34680 Arabidopsis lyrata HOM05D009505 ORTHO05D007552 6.9e-07 57.4 93 50.5
EL10Ac7g17001 Beta vulgaris HOM05D007574 ORTHO05D007552 6.9e-07 57.4 68 50.0
Thhalv10015172m.g Eutrema salsugineum HOM05D009057 ORTHO05D011698 6.9e-07 57.4 62 53.2
Os05g0456900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 6.9e-07 57.4 47 51.1
BraA03t11324Z Brassica rapa HOM05D009505 ORTHO05D007552 1.5e-06 56.2 93 51.6
A10p33500 Brassica napus HOM05D009057 ORTHO05D011698 3.4e-06 55.1 62 51.6
CARHR211270 Cardamine hirsuta HOM05D009057 ORTHO05D011698 4.4e-06 54.7 62 51.6
Thecc.09G313900 Theobroma cacao HOM05D007574 ORTHO05D007552 4.4e-06 54.7 47 55.3
Aqoxy1G00836 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 5.8e-06 54.3 50 58.0
A03p20830 Brassica napus HOM05D009505 ORTHO05D007552 5.8e-06 54.3 93 50.5


User provided reference genes

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