Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 2.2e-230 802.0 407 100.0
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 6.0e-148 528.1 353 77.1
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 1.6e-132 476.9 405 64.9
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 1.8e-128 463.4 359 69.6
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 4.2e-125 452.2 360 68.3
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 1.8e-123 446.8 323 71.5
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 5.0e-118 428.7 363 63.6
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 5.7e-114 415.2 362 63.3
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 3.2e-109 399.4 360 60.8
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 5.1e-107 392.1 220 91.4
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 1.1e-106 391.0 363 61.4
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 7.4e-106 388.3 360 60.6
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 1.3e-105 387.5 351 59.8
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 3.7e-105 386.0 367 59.4
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 2.6e-103 379.8 372 56.7
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 5.0e-102 375.6 345 57.1
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 9.4e-101 371.3 364 58.8
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 2.7e-100 369.8 345 57.1
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 2.7e-100 369.8 357 54.9
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 8.0e-100 368.2 358 56.1
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 3.0e-99 366.3 344 59.9
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 2.6e-98 363.2 357 57.4
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 5.7e-98 362.1 358 54.7
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 2.4e-96 356.7 346 56.4
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 3.1e-96 356.3 346 56.6
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 7.0e-96 355.1 361 53.2
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 9.1e-96 354.8 360 56.9
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 1.2e-95 354.4 359 54.6
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 1.2e-95 354.4 346 56.6
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 1.0e-94 351.3 349 58.5
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 1.7e-94 350.5 360 56.4
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 5.0e-94 349.0 329 56.8
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.5e-93 347.4 345 56.5
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 3.2e-93 346.3 361 53.2
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 4.2e-93 345.9 345 56.8
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 2.7e-92 343.2 350 53.4
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 2.7e-92 343.2 358 54.2
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 1.0e-91 341.3 354 52.5
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 1.8e-91 340.5 354 52.3
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 5.2e-91 339.0 350 52.9
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 5.7e-90 335.5 363 50.7
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 9.7e-90 334.7 364 53.6
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 2.2e-89 333.6 382 51.0
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 3.7e-89 332.8 353 53.5
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 1.6e-84 317.4 359 51.5
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 2.3e-83 313.5 363 51.0
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 1.5e-82 310.8 350 52.0
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 9.8e-82 308.1 335 53.1
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 1.7e-81 307.4 372 48.1
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 1.7e-81 307.4 361 49.0
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 2.2e-81 307.0 363 49.6
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 8.3e-81 305.1 349 49.3
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 4.1e-80 302.8 357 49.9
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 7.7e-79 298.5 374 47.9
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 3.8e-78 296.2 467 40.9
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 5.0e-78 295.8 317 49.5
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 6.6e-78 295.4 348 52.6
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 1.5e-77 294.3 353 49.0
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 9.5e-77 291.6 357 47.1
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 1.6e-76 290.8 352 48.0
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 8.0e-76 288.5 348 52.9
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 5.2e-75 285.8 307 50.2
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 8.9e-75 285.0 352 50.0
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 5.7e-74 282.3 388 46.6
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 7.5e-74 282.0 285 52.6
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 3.7e-73 279.6 346 48.6
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 4.9e-73 279.3 376 47.9
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 1.4e-72 277.7 370 45.7
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 3.2e-72 276.6 345 51.0
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 1.2e-71 274.6 388 43.6
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 1.3e-70 271.2 350 48.3
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.3e-70 270.4 349 45.3
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 1.5e-69 267.7 357 45.9
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 3.3e-69 266.5 369 45.3
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 1.0e-67 261.5 348 44.0
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 2.3e-67 260.4 386 40.4
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 8.9e-67 258.5 260 54.2
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 2.6e-66 256.9 273 50.5
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.2e-65 253.8 340 44.1
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 3.7e-65 253.1 348 45.4
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 4.9e-65 252.7 332 47.3
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 6.4e-65 252.3 345 46.1
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 8.3e-65 251.9 345 45.8
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 1.1e-64 251.5 314 46.8
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 1.1e-64 251.5 348 45.1
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.2e-63 248.1 349 45.6
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 2.0e-63 247.3 367 42.0
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 4.6e-63 246.1 346 45.7
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 4.6e-63 246.1 353 43.9
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 6.0e-63 245.7 348 45.1
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.5e-61 241.1 288 50.3
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 2.5e-61 240.4 349 42.1
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 2.5e-61 240.4 345 44.6
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 7.3e-61 238.8 349 43.3
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 7.3e-61 238.8 348 44.3
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 2.1e-60 237.3 314 43.3
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 8.0e-60 235.3 344 41.9
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 1.1e-59 235.0 286 47.9
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 1.4e-59 234.6 354 42.1
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 2.3e-59 233.8 355 40.0
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 3.1e-59 233.4 347 43.8
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 4.0e-59 233.0 353 42.5
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 5.8e-58 229.2 344 43.0
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.0e-54 218.4 206 57.3
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 4.3e-53 213.0 364 36.0
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 1.4e-51 208.0 356 36.8
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 5.2e-51 206.1 314 42.4
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 5.2e-51 206.1 268 45.5
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 6.8e-51 205.7 362 40.3
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 7.5e-50 202.2 188 59.0
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 2.2e-49 200.7 318 38.1
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 2.9e-49 200.3 200 52.5
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 7.3e-45 185.7 266 47.7
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 7.3e-45 185.7 266 47.7
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 7.3e-45 185.7 266 47.7
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 2.8e-44 183.7 216 48.1
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 6.2e-44 182.6 227 51.1
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 2.9e-41 173.7 353 36.5
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 9.3e-40 168.7 255 46.3
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 3.9e-38 163.3 252 39.7
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 9.6e-37 158.7 218 47.7
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 4.0e-35 153.3 172 49.4
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 2.3e-30 137.5 76 94.7
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 3.9e-30 136.7 285 32.3
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 5.6e-29 132.9 161 48.4
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 5.6e-29 132.9 119 55.5
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 1.8e-27 127.9 127 51.2
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 4.5e-26 123.2 405 27.4
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 2.1e-20 104.4 398 26.1
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 1.8e-19 101.3 110 43.6
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 7.6e-18 95.9 103 50.5
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.0e-14 85.5 66 62.1
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 1.8e-14 84.7 94 54.3
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 8.7e-14 82.4 271 24.7
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 5.7e-13 79.7 66 59.1
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 2.1e-12 77.8 240 30.0
AagrBONN_evm.TU.Sc2ySwM_344.4450 Anthoceros agrestis HOM05D034800 ORTHO05D006884 9.0e-11 72.4 380 22.6
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 3.8e-09 67.0 87 50.6
SEGI_02099 Sequoiadendron giganteum HOM05D005675 ORTHO05D385164 1.8e-06 58.2 102 38.2


User provided reference genes

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