Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.1e-40 169.5 82 100.0
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.4e-32 141.7 75 88.0
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 2.4e-32 141.7 81 82.7
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 7.1e-32 140.2 75 90.7
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 9.3e-32 139.8 75 90.7
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 1.2e-31 139.4 76 89.5
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 1.2e-31 139.4 77 89.6
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 1.6e-31 139.0 75 86.7
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 2.1e-31 138.7 76 88.2
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 2.1e-31 138.7 78 85.9
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 2.7e-31 138.3 75 86.7
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 3.5e-31 137.9 75 89.3
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.0e-30 136.3 75 88.0
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 1.3e-30 136.0 80 82.5
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 2.3e-30 135.2 83 80.7
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 3.0e-30 134.8 77 84.4
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.9e-30 134.4 75 86.7
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 5.1e-30 134.0 83 79.5
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 5.1e-30 134.0 75 85.3
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 5.1e-30 134.0 78 82.1
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.6e-30 133.7 75 88.0
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.6e-30 133.7 75 88.0
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 6.6e-30 133.7 75 88.0
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 6.6e-30 133.7 75 85.3
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 8.7e-30 133.3 78 84.6
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.1e-29 132.9 75 85.3
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 1.1e-29 132.9 77 83.1
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.5e-29 132.5 75 86.7
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.9e-29 132.1 75 86.7
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 2.5e-29 131.7 75 81.3
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 3.3e-29 131.3 75 82.7
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 5.6e-29 130.6 81 77.8
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 7.3e-29 130.2 76 82.9
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.3e-28 129.4 78 82.1
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 1.6e-28 129.0 81 77.8
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.6e-28 129.0 76 81.6
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 3.6e-28 127.9 77 79.2
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 3.6e-28 127.9 75 82.7
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 3.6e-28 127.9 79 78.5
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 8.1e-28 126.7 77 76.6
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.1e-27 126.3 76 81.6
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 1.8e-27 125.6 75 80.0
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 2.4e-27 125.2 76 80.3
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 4.0e-27 124.4 104 64.4
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 4.0e-27 124.4 75 80.0
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 4.0e-27 124.4 79 78.5
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 1.5e-26 122.5 76 77.6
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.6e-26 121.7 80 75.0
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.6e-26 121.7 80 75.0
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.6e-26 121.7 80 75.0
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 4.5e-26 120.9 84 76.2
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 7.6e-26 120.2 75 77.3
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 1.3e-25 119.4 79 74.7
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.3e-25 119.4 77 76.6
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.7e-25 119.0 81 80.2
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 6.4e-25 117.1 77 79.2
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 8.4e-25 116.7 78 78.2
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 1.9e-24 115.5 76 76.3
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 1.9e-24 115.5 76 76.3
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 1.9e-24 115.5 76 76.3
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 2.4e-24 115.2 77 74.0
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 2.4e-24 115.2 86 68.6
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 3.2e-24 114.8 76 77.6
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 4.2e-24 114.4 83 71.1
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.4e-24 114.0 86 68.6
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 1.2e-23 112.8 75 74.7
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 2.1e-23 112.1 75 76.0
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.7e-23 111.7 75 74.7
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 3.5e-23 111.3 76 75.0
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 3.5e-23 111.3 77 74.0
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 4.6e-23 110.9 83 68.7
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 4.6e-23 110.9 77 71.4
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 4.6e-23 110.9 75 73.3
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 7.9e-23 110.2 75 74.7
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.3e-22 109.4 76 73.7
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.8e-22 109.0 75 74.7
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 2.3e-22 108.6 75 73.3
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 2.3e-22 108.6 72 72.2
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 3.9e-22 107.8 79 70.9
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.1e-21 106.3 74 77.0
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 2.5e-21 105.1 75 70.7
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 2.5e-21 105.1 74 77.0
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 3.3e-21 104.8 80 66.2
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 4.3e-21 104.4 75 72.0
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 3.7e-20 101.3 80 67.5
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 4.8e-20 100.9 87 64.4
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.4e-19 99.4 74 74.3
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 1.4e-19 99.4 87 69.0
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 1.4e-19 99.4 87 69.0
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 3.1e-19 98.2 87 59.8
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 7.6e-18 93.6 73 71.2
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.0e-17 93.2 85 60.0
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.3e-17 92.8 87 59.8
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 1.7e-17 92.4 81 58.0
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 2.2e-17 92.0 44 90.9
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.2e-17 92.0 76 64.5
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 3.8e-17 91.3 81 63.0
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 4.9e-17 90.9 81 60.5
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 6.5e-17 90.5 75 65.3
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 6.5e-17 90.5 45 86.7
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.4e-16 89.4 45 88.9
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.4e-16 89.4 72 63.9
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 1.4e-16 89.4 78 64.1
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.9e-16 89.0 46 87.0
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 1.9e-16 89.0 95 52.6
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 4.2e-16 87.8 80 65.0
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 4.2e-16 87.8 53 79.2
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 4.2e-16 87.8 46 87.0
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 5.5e-16 87.4 44 88.6
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.2e-15 86.3 80 62.5
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 3.5e-15 84.7 77 64.9
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 4.6e-15 84.3 42 88.1
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 7.9e-15 83.6 80 62.5
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.0e-14 83.2 80 61.2
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 2.3e-14 82.0 78 59.0
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 2.3e-14 82.0 44 84.1
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 3.0e-14 81.6 80 58.8
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 5.1e-14 80.9 82 58.5
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 5.1e-14 80.9 82 58.5
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 5.1e-14 80.9 80 58.8
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 1.5e-13 79.3 73 60.3
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 1.9e-13 79.0 80 58.8
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 1.9e-13 79.0 80 58.8
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.9e-13 79.0 79 62.0
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 8.2e-12 73.6 76 56.6
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 1.4e-11 72.8 42 83.3
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 2.4e-11 72.0 54 70.4
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 7.6e-10 67.0 29 96.6
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 2.5e-08 62.0 36 80.6
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 5.5e-08 60.8 59 52.5
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.3e-06 55.5 80 37.5
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.9e-06 54.7 25 88.0
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.9e-06 54.7 25 88.0
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 5.1e-06 54.3 31 71.0


User provided reference genes

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